Wall clock time and date at job start Wed Apr 1 2020 05:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36596 * 126.58084 * 2 1 4 4 C 1.47521 * 125.77223 * 359.97288 * 3 2 1 5 5 O 1.21597 * 119.99817 * 0.02562 * 4 3 2 6 6 N 1.34764 * 120.00196 * 180.02562 * 4 3 2 7 7 C 1.48102 * 125.74901 * 179.97438 * 6 4 3 8 8 C 1.53559 * 103.44121 * 204.37561 * 7 6 4 9 9 H 1.08997 * 108.15923 * 73.52050 * 8 7 6 10 10 C 1.49844 * 114.52152 * 195.45552 * 8 7 6 11 11 C 1.51336 * 114.41159 * 66.32124 * 10 8 7 12 12 N 1.44538 * 113.15867 * 35.18797 * 11 10 8 13 13 C 1.36943 * 117.26649 * 150.83014 * 12 11 10 14 14 H 1.07993 * 120.00002 * 333.71003 * 13 12 11 15 15 C 1.38812 * 119.99710 * 153.71866 * 13 12 11 16 16 N 1.31614 * 119.99898 * 158.51269 * 15 13 12 17 17 Si 1.86798 * 120.00004 * 338.51707 * 15 13 12 18 18 H 1.48496 * 109.47574 * 86.99851 * 17 15 13 19 19 H 1.48506 * 109.47063 * 207.00056 * 17 15 13 20 20 H 1.48500 * 109.46863 * 326.99554 * 17 15 13 21 21 C 1.44405 * 125.45925 * 330.85224 * 12 11 10 22 22 C 1.52989 * 113.17375 * 34.68075 * 21 12 11 23 23 H 1.09007 * 112.80226 * 84.24670 * 22 21 12 24 24 C 1.47471 * 125.74452 * 0.02973 * 6 4 3 25 25 N 1.34398 * 108.45730 * 180.24217 * 3 2 1 26 26 N 1.28768 * 109.52200 * 359.58401 * 25 3 2 27 27 N 1.34815 * 126.57497 * 179.97438 * 2 1 3 28 28 C 1.46497 * 126.60026 * 0.02562 * 27 2 1 29 29 C 1.53006 * 109.46792 * 119.99934 * 28 27 2 30 30 C 1.52990 * 109.47364 * 239.99773 * 28 27 2 31 31 H 1.09003 * 109.46949 * 89.97989 * 1 2 3 32 32 H 1.09002 * 109.47284 * 209.97491 * 1 2 3 33 33 H 1.08998 * 109.46880 * 329.97753 * 1 2 3 34 34 H 1.08999 * 110.63043 * 322.95011 * 7 6 4 35 35 H 1.08997 * 110.62867 * 85.98466 * 7 6 4 36 36 H 1.08998 * 108.47070 * 305.09496 * 10 8 7 37 37 H 1.08999 * 108.47094 * 187.54668 * 10 8 7 38 38 H 1.08997 * 108.74887 * 156.13868 * 11 10 8 39 39 H 1.09004 * 108.74640 * 274.36409 * 11 10 8 40 40 H 0.97007 * 120.00244 * 179.97438 * 16 15 13 41 41 H 1.08996 * 108.74281 * 155.63481 * 21 12 11 42 42 H 1.08999 * 108.74032 * 273.84884 * 21 12 11 43 43 H 1.08996 * 110.04176 * 62.75894 * 24 6 4 44 44 H 1.09001 * 110.07724 * 301.32822 * 24 6 4 45 45 H 1.08998 * 109.46980 * 0.02562 * 28 27 2 46 46 H 1.09002 * 109.46559 * 180.02562 * 29 28 27 47 47 H 1.08994 * 109.47256 * 299.99682 * 29 28 27 48 48 H 1.08993 * 109.47470 * 60.00443 * 29 28 27 49 49 H 1.09006 * 109.47074 * 60.00305 * 30 28 27 50 50 H 1.08997 * 109.47496 * 179.97438 * 30 28 27 51 51 H 1.08998 * 109.47542 * 300.00231 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5027 -0.0006 5 8 0.6860 2.7628 -0.0006 6 7 2.7817 3.4986 -0.0010 7 6 2.4764 4.9478 -0.0022 8 6 3.7341 5.5772 -0.6187 9 1 3.7313 5.3644 -1.6877 10 6 3.8543 7.0565 -0.4123 11 6 4.0546 7.4727 1.0288 12 7 4.8581 6.5383 1.7840 13 6 5.5971 7.0417 2.8212 14 1 5.9150 8.0736 2.8068 15 6 5.9377 6.2253 3.8910 16 7 6.9611 6.5376 4.6573 17 14 4.9437 4.6834 4.2427 18 1 5.4850 3.5529 3.4464 19 1 5.0314 4.3570 5.6888 20 1 3.5242 4.9145 3.8727 21 6 4.9471 5.1185 1.5359 22 6 4.8594 4.7601 0.0511 23 1 5.8199 4.8346 -0.4588 24 6 4.2467 3.3290 -0.0016 25 7 3.5984 0.6788 -0.0054 26 7 3.6298 -0.6085 0.0001 27 7 2.3104 -1.0827 0.0005 28 6 1.8863 -2.4849 0.0006 29 6 2.4296 -3.1820 -1.2484 30 6 2.4286 -3.1817 1.2500 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3633 0.8898 0.5142 34 1 1.6007 5.1553 -0.6172 35 1 2.3270 5.3096 1.0151 36 1 2.9477 7.5321 -0.7864 37 1 4.6996 7.4191 -0.9972 38 1 4.5411 8.4479 1.0474 39 1 3.0789 7.5595 1.5072 40 1 7.1990 5.9673 5.4051 41 1 5.8957 4.7531 1.9290 42 1 4.1344 4.6192 2.0635 43 1 4.5634 2.8203 -0.9121 44 1 4.5575 2.7572 0.8728 45 1 0.7975 -2.5352 -0.0003 46 1 2.1137 -4.2253 -1.2485 47 1 2.0432 -2.6857 -2.1386 48 1 3.5183 -3.1318 -1.2480 49 1 2.0416 -2.6850 2.1398 50 1 2.1128 -4.2249 1.2503 51 1 3.5174 -3.1314 1.2505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088155017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:05 Heat of formation + Delta-G solvation = 68.681433 kcal Electronic energy + Delta-G solvation = -32223.632050 eV Core-core repulsion = 28160.056271 eV Total energy + Delta-G solvation = -4063.575778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.41541 -41.60860 -39.71014 -37.44839 -37.25848 -34.77077 -34.06247 -33.08788 -32.69015 -31.89009 -29.47110 -28.59256 -28.31803 -27.12469 -26.14595 -25.06041 -24.26022 -23.21299 -22.86774 -21.32716 -20.46796 -19.86826 -18.66584 -18.40535 -17.82762 -17.34002 -17.31929 -16.87388 -16.70244 -16.07111 -15.68665 -15.46758 -15.34192 -15.15891 -14.96077 -14.65489 -14.45256 -14.30583 -14.13821 -14.03684 -14.02057 -13.90811 -13.72065 -13.28584 -13.24374 -13.19894 -12.96447 -12.74466 -12.63032 -12.56903 -12.46987 -12.19989 -12.16463 -11.94639 -11.78749 -11.65016 -11.38730 -11.21483 -11.14631 -11.04625 -10.70019 -10.30626 -9.73090 -8.90712 -8.23411 -5.53299 0.05395 0.54437 1.00228 1.21469 1.30393 1.37918 1.82040 2.11022 2.32248 2.98664 3.03007 3.20850 3.31543 3.41791 3.53446 3.60924 3.66855 3.76424 3.76934 3.93416 4.05221 4.10554 4.23065 4.33875 4.43274 4.47369 4.51657 4.55763 4.57753 4.59927 4.60578 4.66618 4.67978 4.71343 4.72459 4.81574 4.84350 4.97569 5.02586 5.06733 5.12423 5.14240 5.17992 5.19431 5.26151 5.28215 5.45995 5.53042 5.89953 6.09352 6.31620 6.75401 6.99046 7.00452 7.70603 7.91569 8.96347 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.003358 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.965961 B = 8336.561928 C = 9402.831025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.133 3.867 3 C -0.135 4.135 4 C 0.613 3.387 5 O -0.560 6.560 6 N -0.608 5.608 7 C 0.116 3.884 8 C -0.077 4.077 9 H 0.105 0.895 10 C -0.106 4.106 11 C 0.152 3.848 12 N -0.609 5.609 13 C -0.256 4.256 14 H 0.063 0.937 15 C -0.021 4.021 16 N -0.949 5.949 17 Si 0.938 3.062 18 H -0.279 1.279 19 H -0.311 1.311 20 H -0.285 1.285 21 C 0.146 3.854 22 C -0.104 4.104 23 H 0.122 0.878 24 C 0.123 3.877 25 N -0.224 5.224 26 N -0.087 5.087 27 N -0.345 5.345 28 C 0.131 3.869 29 C -0.157 4.157 30 C -0.162 4.162 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.008 0.992 40 H 0.262 0.738 41 H 0.038 0.962 42 H -0.004 1.004 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.145 0.855 46 H 0.114 0.886 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.115 0.885 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.174 -20.801 -16.736 30.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.006 4.006 3 C -0.274 4.274 4 C 0.401 3.599 5 O -0.440 6.440 6 N -0.340 5.340 7 C -0.006 4.006 8 C -0.096 4.096 9 H 0.123 0.877 10 C -0.144 4.144 11 C 0.028 3.972 12 N -0.332 5.332 13 C -0.386 4.386 14 H 0.081 0.919 15 C -0.216 4.216 16 N -0.595 5.595 17 Si 0.770 3.230 18 H -0.206 1.206 19 H -0.240 1.240 20 H -0.211 1.211 21 C 0.021 3.979 22 C -0.123 4.123 23 H 0.140 0.860 24 C 0.000 4.000 25 N -0.097 5.097 26 N -0.066 5.066 27 N -0.132 5.132 28 C 0.032 3.968 29 C -0.215 4.215 30 C -0.219 4.219 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.013 0.987 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.162 0.838 46 H 0.132 0.868 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.134 0.866 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.306 -21.224 -16.658 30.539 hybrid contribution -0.699 -0.306 1.287 1.496 sum -15.005 -21.530 -15.370 30.413 Atomic orbital electron populations 1.20842 0.82148 1.06089 1.05941 1.22351 0.97522 0.85646 0.95124 1.21182 0.89836 0.95245 1.21185 1.16577 0.84474 0.82655 0.76169 1.90711 1.15814 1.83904 1.53552 1.48560 1.07442 1.06709 1.71298 1.22221 0.99411 0.78241 1.00722 1.21152 0.92123 0.95305 1.00988 0.87655 1.20620 1.04101 0.93934 0.95786 1.20185 0.92906 0.92399 0.91719 1.43268 1.52076 1.03698 1.34208 1.19095 1.24835 0.97556 0.97096 0.91944 1.25669 0.98430 1.00419 0.97119 1.69934 1.27296 1.41238 1.21033 0.86210 0.80039 0.81881 0.74915 1.20589 1.23987 1.21121 1.20745 0.97585 0.84314 0.95273 1.22843 1.00185 0.93488 0.95814 0.86031 1.22433 0.78456 0.96848 1.02303 1.74719 1.19707 1.04744 1.10501 1.81841 0.98257 1.02924 1.23622 1.51008 1.05119 1.08571 1.48484 1.22228 1.02529 0.72957 0.99040 1.22151 1.01971 1.02502 0.94889 1.22182 1.01986 1.02647 0.95107 0.87136 0.87121 0.88997 0.88621 0.93578 0.88456 0.90021 0.93211 0.97422 0.92902 0.94409 0.98676 0.89119 0.93048 0.83780 0.86770 0.92031 0.92616 0.92675 0.86621 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.41 71.24 0.67 -0.65 16 2 C 0.13 3.00 7.02 41.72 0.29 3.29 16 3 C -0.13 -4.13 6.85 40.82 0.28 -3.86 16 4 C 0.61 20.81 7.86 86.69 0.68 21.49 16 5 O -0.56 -19.81 15.00 -4.02 -0.06 -19.87 16 6 N -0.61 -20.58 3.33 -812.43 -2.71 -23.29 16 7 C 0.12 3.67 5.85 86.26 0.50 4.17 16 8 C -0.08 -2.14 2.65 -11.16 -0.03 -2.17 16 9 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 10 C -0.11 -2.91 5.46 29.04 0.16 -2.75 16 11 C 0.15 5.85 5.94 86.20 0.51 6.36 16 12 N -0.61 -29.32 2.98 -715.28 -2.13 -31.45 16 13 C -0.26 -14.83 9.75 84.03 0.82 -14.01 16 14 H 0.06 3.86 7.91 -2.91 -0.02 3.84 16 15 C -0.02 -1.27 5.08 84.86 0.43 -0.84 16 16 N -0.95 -61.07 13.97 21.65 0.30 -60.77 16 17 Si 0.94 50.99 23.88 68.60 1.64 52.63 16 18 H -0.28 -14.67 6.55 99.48 0.65 -14.02 16 19 H -0.31 -16.98 7.11 99.48 0.71 -16.27 16 20 H -0.28 -15.61 6.75 99.48 0.67 -14.93 16 21 C 0.15 6.62 2.74 86.77 0.24 6.85 16 22 C -0.10 -3.48 3.99 -9.38 -0.04 -3.52 16 23 H 0.12 3.66 8.14 -2.38 -0.02 3.64 16 24 C 0.12 4.08 4.64 87.15 0.40 4.48 16 25 N -0.22 -7.27 9.81 -50.00 -0.49 -7.76 16 26 N -0.09 -2.48 13.67 37.02 0.51 -1.97 16 27 N -0.34 -6.98 3.28 -313.40 -1.03 -8.01 16 28 C 0.13 1.30 3.68 44.99 0.17 1.47 16 29 C -0.16 -1.25 9.47 71.98 0.68 -0.57 16 30 C -0.16 -1.56 9.47 71.98 0.68 -0.87 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 0.74 7.18 -2.39 -0.02 0.72 16 33 H 0.09 1.81 6.43 -2.39 -0.02 1.80 16 34 H 0.10 2.69 8.06 -2.39 -0.02 2.67 16 35 H 0.05 1.75 7.08 -2.39 -0.02 1.74 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 1.92 7.81 -2.39 -0.02 1.90 16 39 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 41 H 0.04 1.92 5.66 -2.39 -0.01 1.91 16 42 H 0.00 -0.20 3.98 -2.39 -0.01 -0.21 16 43 H 0.09 2.68 7.80 -2.39 -0.02 2.66 16 44 H 0.05 1.98 7.19 -2.39 -0.02 1.96 16 45 H 0.14 0.44 6.79 -2.39 -0.02 0.43 16 46 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 50 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 51 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -80.78 388.09 3.32 -77.45 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 0.84 Total: 4.14 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 6.45 Total: 18.90 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -5.55 Total: -133.25 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.06 Total: -19.87 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 1.64 Total: 52.63 kcal Total: -80.78 3.32 -77.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088155017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.135 kcal (2) G-P(sol) polarization free energy of solvation -80.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds