Wall clock time and date at job start Wed Apr 1 2020 04:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99571 * 2 1 4 4 N 1.46503 * 109.46898 * 125.00134 * 3 2 1 5 5 C 1.34813 * 126.59600 * 124.99873 * 4 3 2 6 6 C 1.36599 * 106.84219 * 179.97438 * 5 4 3 7 7 C 1.47524 * 125.77102 * 179.97438 * 6 5 4 8 8 O 1.21597 * 119.99715 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99502 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99249 * 179.72738 * 9 7 6 11 11 H 1.08997 * 110.21535 * 33.34315 * 10 9 7 12 12 C 1.52527 * 110.25054 * 271.25239 * 10 9 7 13 13 C 1.46236 * 114.27730 * 151.62175 * 12 10 9 14 14 N 1.50169 * 107.53064 * 58.41167 * 13 12 10 15 15 C 1.36932 * 120.53754 * 109.56755 * 14 13 12 16 16 H 1.07999 * 120.00408 * 156.71010 * 15 14 13 17 17 C 1.38819 * 119.99783 * 336.70386 * 15 14 13 18 18 N 1.31615 * 120.00205 * 340.42032 * 17 15 14 19 19 Si 1.86801 * 119.99606 * 160.41649 * 17 15 14 20 20 H 1.48499 * 109.47196 * 60.00656 * 19 17 15 21 21 H 1.48504 * 109.46639 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47418 * 300.00143 * 19 17 15 23 23 C 1.43432 * 118.92682 * 289.58921 * 14 13 12 24 24 C 1.54906 * 116.08035 * 91.56686 * 23 14 13 25 25 C 1.52999 * 109.35950 * 198.43337 * 24 23 14 26 26 C 1.52997 * 109.24709 * 78.77897 * 24 23 14 27 27 C 1.50131 * 110.24552 * 155.27832 * 10 9 7 28 28 N 1.34403 * 108.45783 * 0.24440 * 6 5 4 29 29 N 1.28763 * 109.51871 * 359.58385 * 28 6 5 30 30 H 1.08008 * 120.00434 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99885 * 179.97438 * 1 2 3 32 32 H 1.07994 * 120.00243 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47713 * 5.00458 * 3 2 1 34 34 H 1.08996 * 109.47170 * 244.99783 * 3 2 1 35 35 H 1.07997 * 126.57745 * 359.97438 * 5 4 3 36 36 H 0.96998 * 120.00518 * 0.02562 * 9 7 6 37 37 H 1.09000 * 108.52570 * 272.86709 * 12 10 9 38 38 H 1.08997 * 108.51779 * 30.38127 * 12 10 9 39 39 H 1.09002 * 109.84484 * 298.90688 * 13 12 10 40 40 H 1.09001 * 109.84585 * 177.91984 * 13 12 10 41 41 H 0.96998 * 120.00235 * 179.97438 * 18 17 15 42 42 H 1.08998 * 108.16097 * 329.84839 * 23 14 13 43 43 H 1.09003 * 108.00223 * 213.16124 * 23 14 13 44 44 H 1.08997 * 109.47111 * 180.68069 * 25 24 23 45 45 H 1.08998 * 109.47332 * 300.68684 * 25 24 23 46 46 H 1.09004 * 109.46978 * 60.68536 * 25 24 23 47 47 H 1.09001 * 109.47369 * 299.38422 * 26 24 23 48 48 H 1.09002 * 109.47604 * 59.38341 * 26 24 23 49 49 H 1.08997 * 109.47528 * 179.38712 * 26 24 23 50 50 H 1.09000 * 109.20884 * 336.99264 * 27 10 9 51 51 H 1.08995 * 109.20992 * 96.35660 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3228 1.5498 1.0741 6 6 4.7898 1.4872 2.3563 7 6 6.1939 1.6659 2.7723 8 8 7.0507 1.8913 1.9395 9 7 6.5267 1.5792 4.0754 10 6 7.9220 1.7508 4.4880 11 1 8.4215 2.4686 3.8374 12 6 8.6499 0.4107 4.4579 13 6 10.0864 0.5124 4.2038 14 7 10.6765 1.3754 5.2818 15 6 11.4824 0.8308 6.2458 16 1 12.1901 1.4534 6.7729 17 6 11.3895 -0.5214 6.5454 18 7 10.3097 -1.1965 6.2131 19 14 12.7972 -1.3829 7.4204 20 1 13.0293 -0.7386 8.7381 21 1 12.4531 -2.8134 7.6221 22 1 14.0283 -1.2818 6.5962 23 6 10.3820 2.7791 5.2858 24 6 9.1496 3.2141 6.1174 25 6 8.6997 4.6055 5.6677 26 6 9.5308 3.2584 7.5985 27 6 7.9889 2.2092 5.9160 28 7 3.7548 1.2295 3.1740 29 7 2.6728 1.1365 2.4823 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4027 -0.9313 35 1 4.9064 1.7377 0.1850 36 1 5.8432 1.3991 4.7397 37 1 8.5022 -0.0852 5.4172 38 1 8.2035 -0.2083 3.6797 39 1 10.2584 0.9688 3.2289 40 1 10.5387 -0.4789 4.2342 41 1 10.2449 -2.1415 6.4221 42 1 10.2252 3.0963 4.2548 43 1 11.2551 3.3054 5.6716 44 1 7.8399 4.9185 6.2600 45 1 9.5156 5.3144 5.8087 46 1 8.4230 4.5749 4.6138 47 1 9.8471 2.2668 7.9222 48 1 10.3479 3.9654 7.7424 49 1 8.6690 3.5747 8.1862 50 1 7.0479 2.6902 6.1827 51 1 8.1464 1.3461 6.5627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089514009.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:08 Heat of formation + Delta-G solvation = 108.057105 kcal Electronic energy + Delta-G solvation = -31495.714860 eV Core-core repulsion = 27433.846539 eV Total energy + Delta-G solvation = -4061.868321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.29332 -39.56502 -37.99770 -36.34095 -34.54351 -34.31620 -33.11700 -31.60434 -30.93020 -30.23814 -27.70078 -27.21249 -26.60166 -25.44404 -24.03070 -23.04747 -22.51884 -21.48646 -20.79336 -20.08834 -19.80234 -18.42961 -17.57983 -16.62481 -16.22732 -16.18220 -15.75312 -15.67835 -15.00565 -14.73505 -14.56136 -14.18883 -14.00353 -13.84286 -13.55324 -13.33909 -13.16392 -12.86110 -12.49936 -12.28005 -12.25514 -11.99567 -11.80206 -11.58864 -11.43485 -11.37388 -11.16777 -10.81850 -10.77272 -10.62826 -10.62231 -10.53383 -10.20952 -10.14232 -9.97487 -9.92837 -9.66280 -9.55527 -9.41126 -9.36580 -9.15523 -8.56278 -8.22090 -6.63134 -5.72046 -3.10253 1.00130 1.32909 1.74775 2.14437 3.42805 3.44535 3.49205 3.51238 3.53585 4.00594 4.14261 4.21970 4.47279 4.56701 4.69903 4.86818 4.91525 5.16928 5.27714 5.31029 5.45690 5.56157 5.61822 5.67303 5.73715 5.93756 5.96724 5.98464 6.09601 6.16543 6.18140 6.22508 6.36516 6.39670 6.45725 6.56317 6.64620 6.73199 6.80773 6.87174 6.99579 7.07035 7.12648 7.16538 7.31491 7.36223 7.65362 7.76410 7.80997 7.99307 8.05496 8.49684 8.53521 9.26052 9.94171 10.47976 11.34839 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.002510 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.266604 B =11153.261656 C =12052.693414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.181 4.181 3 C 0.152 3.848 4 N -0.363 5.363 5 C 0.088 3.912 6 C -0.094 4.094 7 C 0.599 3.401 8 O -0.541 6.541 9 N -0.701 5.701 10 C 0.147 3.853 11 H 0.087 0.913 12 C -0.133 4.133 13 C 0.169 3.831 14 N -0.585 5.585 15 C -0.242 4.242 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.287 1.287 23 C 0.166 3.834 24 C -0.089 4.089 25 C -0.135 4.135 26 C -0.128 4.128 27 C -0.102 4.102 28 N -0.205 5.205 29 N -0.063 5.063 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.204 0.796 36 H 0.402 0.598 37 H 0.103 0.897 38 H 0.028 0.972 39 H 0.009 0.991 40 H 0.091 0.909 41 H 0.252 0.748 42 H 0.029 0.971 43 H 0.033 0.967 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.033 0.967 50 H 0.042 0.958 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.538 6.270 -11.981 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.200 4.200 3 C 0.031 3.969 4 N -0.148 5.148 5 C -0.068 4.068 6 C -0.233 4.233 7 C 0.382 3.618 8 O -0.418 6.418 9 N -0.349 5.349 10 C 0.044 3.956 11 H 0.105 0.895 12 C -0.173 4.173 13 C 0.045 3.955 14 N -0.305 5.305 15 C -0.371 4.371 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.728 3.272 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.213 1.213 23 C 0.037 3.963 24 C -0.093 4.093 25 C -0.193 4.193 26 C -0.185 4.185 27 C -0.140 4.140 28 N -0.079 5.079 29 N -0.043 5.043 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.221 0.779 36 H 0.236 0.764 37 H 0.121 0.879 38 H 0.047 0.953 39 H 0.027 0.973 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.060 0.940 49 H 0.052 0.948 50 H 0.061 0.939 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.037 5.954 -11.565 22.238 hybrid contribution 0.793 -0.520 0.033 0.949 sum -17.244 5.433 -11.532 21.444 Atomic orbital electron populations 1.23992 0.95459 1.02817 0.96451 1.22885 0.96388 0.97467 1.03223 1.21085 0.91942 0.98124 0.85704 1.50524 1.06648 1.48557 1.09060 1.23408 0.84498 0.98087 1.00801 1.21695 0.95784 1.15401 0.90435 1.16732 0.84479 0.77243 0.83339 1.90802 1.49203 1.50184 1.51617 1.46086 1.11234 1.70621 1.07003 1.20559 0.79207 0.99605 0.96256 0.89478 1.21347 0.97641 0.94236 1.04030 1.20103 0.91372 0.96818 0.87215 1.44259 1.55252 1.02694 1.28324 1.19120 1.11354 0.92606 1.14043 0.91620 1.24868 0.96783 0.98189 0.99794 1.69950 1.24936 1.08512 1.51064 0.86451 0.82749 0.78627 0.79415 1.21182 1.21897 1.21330 1.20516 0.93337 0.86797 0.95657 1.21934 0.97482 0.92892 0.97016 1.21846 1.00027 0.96989 1.00457 1.21739 0.99075 1.02674 0.95046 1.21793 0.96810 1.00044 0.95393 1.74661 0.96475 1.09804 1.26955 1.81991 1.17006 1.21999 0.83326 0.87919 0.87378 0.86377 0.88082 0.86844 0.77888 0.76351 0.87902 0.95292 0.97299 0.89111 0.93800 0.95286 0.94887 0.93742 0.93333 0.93355 0.90915 0.93963 0.94837 0.93891 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 14.32 29.02 0.42 -0.27 16 2 C -0.18 -1.02 9.72 -36.03 -0.35 -1.37 16 3 C 0.15 0.79 6.98 -5.19 -0.04 0.75 16 4 N -0.36 -3.52 3.68 -62.24 -0.23 -3.74 16 5 C 0.09 0.95 11.27 -16.83 -0.19 0.76 16 6 C -0.09 -1.34 6.99 -83.55 -0.58 -1.93 16 7 C 0.60 10.19 7.81 -12.48 -0.10 10.09 16 8 O -0.54 -10.53 16.52 5.28 0.09 -10.45 16 9 N -0.70 -11.92 4.95 -56.48 -0.28 -12.20 16 10 C 0.15 2.80 2.16 -69.60 -0.15 2.65 16 11 H 0.09 1.80 5.17 -51.93 -0.27 1.53 16 12 C -0.13 -2.93 4.74 -30.19 -0.14 -3.07 16 13 C 0.17 4.03 5.25 -5.20 -0.03 4.00 16 14 N -0.59 -14.02 2.60 -175.08 -0.46 -14.48 16 15 C -0.24 -6.30 8.94 -15.06 -0.13 -6.43 16 16 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 17 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 18 N -0.90 -24.42 9.42 55.49 0.52 -23.90 16 19 Si 0.90 21.38 29.60 -169.99 -5.03 16.35 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.17 3.46 4.00 -4.66 -0.02 3.44 16 24 C -0.09 -1.62 0.76 -152.53 -0.12 -1.74 16 25 C -0.14 -2.11 8.21 37.16 0.30 -1.81 16 26 C -0.13 -2.33 8.28 37.16 0.31 -2.02 16 27 C -0.10 -1.90 4.15 -27.19 -0.11 -2.02 16 28 N -0.21 -3.03 12.04 32.85 0.40 -2.64 16 29 N -0.06 -0.83 13.64 60.35 0.82 -0.01 16 30 H 0.10 0.35 7.84 -52.48 -0.41 -0.06 16 31 H 0.11 0.42 8.06 -52.48 -0.42 0.00 16 32 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.10 0.39 7.79 -51.93 -0.40 -0.02 16 34 H 0.11 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.40 6.30 8.21 -40.82 -0.34 5.97 16 37 H 0.10 2.54 5.29 -51.93 -0.27 2.26 16 38 H 0.03 0.64 8.01 -51.93 -0.42 0.23 16 39 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 40 H 0.09 2.40 6.05 -51.93 -0.31 2.09 16 41 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.03 0.59 6.69 -51.93 -0.35 0.25 16 43 H 0.03 0.69 7.81 -51.93 -0.41 0.29 16 44 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.76 7.57 -51.93 -0.39 0.37 16 47 H 0.07 1.54 7.45 -51.93 -0.39 1.16 16 48 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 51 H 0.08 1.78 6.65 -51.93 -0.35 1.44 16 LS Contribution 403.55 15.07 6.08 6.08 Total: -1.00 -30.85 403.55 -7.15 -38.01 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.05 Total: 6.00 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.02 Total: 0.99 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.78 Total: -56.97 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.85 -7.15 -38.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089514009.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.064 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds