Wall clock time and date at job start Wed Apr 1 2020 04:35:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30998 * 1
3 3 C 1.50699 * 119.99571 * 2 1
4 4 N 1.46503 * 109.46898 * 125.00134 * 3 2 1
5 5 C 1.34813 * 126.59600 * 124.99873 * 4 3 2
6 6 C 1.36599 * 106.84219 * 179.97438 * 5 4 3
7 7 C 1.47524 * 125.77102 * 179.97438 * 6 5 4
8 8 O 1.21597 * 119.99715 * 0.02562 * 7 6 5
9 9 N 1.34773 * 119.99502 * 180.02562 * 7 6 5
10 10 C 1.46507 * 119.99249 * 179.72738 * 9 7 6
11 11 H 1.08997 * 110.21535 * 33.34315 * 10 9 7
12 12 C 1.52527 * 110.25054 * 271.25239 * 10 9 7
13 13 C 1.46236 * 114.27730 * 151.62175 * 12 10 9
14 14 N 1.50169 * 107.53064 * 58.41167 * 13 12 10
15 15 C 1.36932 * 120.53754 * 109.56755 * 14 13 12
16 16 H 1.07999 * 120.00408 * 156.71010 * 15 14 13
17 17 C 1.38819 * 119.99783 * 336.70386 * 15 14 13
18 18 N 1.31615 * 120.00205 * 340.42032 * 17 15 14
19 19 Si 1.86801 * 119.99606 * 160.41649 * 17 15 14
20 20 H 1.48499 * 109.47196 * 60.00656 * 19 17 15
21 21 H 1.48504 * 109.46639 * 180.02562 * 19 17 15
22 22 H 1.48502 * 109.47418 * 300.00143 * 19 17 15
23 23 C 1.43432 * 118.92682 * 289.58921 * 14 13 12
24 24 C 1.54906 * 116.08035 * 91.56686 * 23 14 13
25 25 C 1.52999 * 109.35950 * 198.43337 * 24 23 14
26 26 C 1.52997 * 109.24709 * 78.77897 * 24 23 14
27 27 C 1.50131 * 110.24552 * 155.27832 * 10 9 7
28 28 N 1.34403 * 108.45783 * 0.24440 * 6 5 4
29 29 N 1.28763 * 109.51871 * 359.58385 * 28 6 5
30 30 H 1.08008 * 120.00434 * 359.97438 * 1 2 3
31 31 H 1.08004 * 119.99885 * 179.97438 * 1 2 3
32 32 H 1.07994 * 120.00243 * 180.02562 * 2 1 3
33 33 H 1.08998 * 109.47713 * 5.00458 * 3 2 1
34 34 H 1.08996 * 109.47170 * 244.99783 * 3 2 1
35 35 H 1.07997 * 126.57745 * 359.97438 * 5 4 3
36 36 H 0.96998 * 120.00518 * 0.02562 * 9 7 6
37 37 H 1.09000 * 108.52570 * 272.86709 * 12 10 9
38 38 H 1.08997 * 108.51779 * 30.38127 * 12 10 9
39 39 H 1.09002 * 109.84484 * 298.90688 * 13 12 10
40 40 H 1.09001 * 109.84585 * 177.91984 * 13 12 10
41 41 H 0.96998 * 120.00235 * 179.97438 * 18 17 15
42 42 H 1.08998 * 108.16097 * 329.84839 * 23 14 13
43 43 H 1.09003 * 108.00223 * 213.16124 * 23 14 13
44 44 H 1.08997 * 109.47111 * 180.68069 * 25 24 23
45 45 H 1.08998 * 109.47332 * 300.68684 * 25 24 23
46 46 H 1.09004 * 109.46978 * 60.68536 * 25 24 23
47 47 H 1.09001 * 109.47369 * 299.38422 * 26 24 23
48 48 H 1.09002 * 109.47604 * 59.38341 * 26 24 23
49 49 H 1.08997 * 109.47528 * 179.38712 * 26 24 23
50 50 H 1.09000 * 109.20884 * 336.99264 * 27 10 9
51 51 H 1.08995 * 109.20992 * 96.35660 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3051 0.0000
4 7 2.9937 1.3319 1.1314
5 6 4.3228 1.5498 1.0741
6 6 4.7898 1.4872 2.3563
7 6 6.1939 1.6659 2.7723
8 8 7.0507 1.8913 1.9395
9 7 6.5267 1.5792 4.0754
10 6 7.9220 1.7508 4.4880
11 1 8.4215 2.4686 3.8374
12 6 8.6499 0.4107 4.4579
13 6 10.0864 0.5124 4.2038
14 7 10.6765 1.3754 5.2818
15 6 11.4824 0.8308 6.2458
16 1 12.1901 1.4534 6.7729
17 6 11.3895 -0.5214 6.5454
18 7 10.3097 -1.1965 6.2131
19 14 12.7972 -1.3829 7.4204
20 1 13.0293 -0.7386 8.7381
21 1 12.4531 -2.8134 7.6221
22 1 14.0283 -1.2818 6.5962
23 6 10.3820 2.7791 5.2858
24 6 9.1496 3.2141 6.1174
25 6 8.6997 4.6055 5.6677
26 6 9.5308 3.2584 7.5985
27 6 7.9889 2.2092 5.9160
28 7 3.7548 1.2295 3.1740
29 7 2.6728 1.1365 2.4823
30 1 -0.5401 0.9353 0.0004
31 1 -0.5400 -0.9354 -0.0004
32 1 1.8500 -0.9352 -0.0004
33 1 1.3585 2.1317 0.0896
34 1 2.6212 1.4027 -0.9313
35 1 4.9064 1.7377 0.1850
36 1 5.8432 1.3991 4.7397
37 1 8.5022 -0.0852 5.4172
38 1 8.2035 -0.2083 3.6797
39 1 10.2584 0.9688 3.2289
40 1 10.5387 -0.4789 4.2342
41 1 10.2449 -2.1415 6.4221
42 1 10.2252 3.0963 4.2548
43 1 11.2551 3.3054 5.6716
44 1 7.8399 4.9185 6.2600
45 1 9.5156 5.3144 5.8087
46 1 8.4230 4.5749 4.6138
47 1 9.8471 2.2668 7.9222
48 1 10.3479 3.9654 7.7424
49 1 8.6690 3.5747 8.1862
50 1 7.0479 2.6902 6.1827
51 1 8.1464 1.3461 6.5627
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001089514009.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:35:07
Heat of formation + Delta-G solvation = 88.756875 kcal
Electronic energy + Delta-G solvation = -31496.551781 eV
Core-core repulsion = 27433.846539 eV
Total energy + Delta-G solvation = -4062.705242 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-43.22289 -41.06207 -39.51681 -36.91544 -36.21963 -35.91992 -33.82917 -33.26584
-32.50425 -31.55483 -29.11462 -28.02029 -28.00019 -27.27055 -25.39782 -24.62579
-23.38072 -22.98691 -21.79225 -21.47232 -20.92226 -19.67953 -18.86361 -18.53461
-17.28859 -17.23425 -17.03397 -16.78530 -16.13814 -15.87304 -15.78674 -15.68268
-15.44277 -15.20769 -15.06819 -14.65011 -14.55625 -14.13088 -13.82360 -13.51485
-13.47178 -13.22375 -13.06654 -13.01323 -12.87286 -12.61610 -12.51163 -12.48639
-12.35465 -12.32398 -12.21375 -11.91544 -11.67302 -11.54585 -11.39254 -11.36903
-11.09583 -11.05132 -10.93605 -10.58070 -10.44923 -10.32650 -9.85270 -8.58649
-7.75301 -5.14773 0.15147 0.63551 0.79301 1.50245 1.53337 1.58218
1.59376 2.17104 2.29550 2.59018 3.19987 3.37223 3.43451 3.61740
3.79503 3.83612 3.97758 4.00526 4.09452 4.11154 4.11982 4.42591
4.48409 4.51084 4.54072 4.57073 4.72413 4.80096 4.82546 4.93302
4.93726 4.96783 4.99063 5.10818 5.14473 5.24983 5.29261 5.33531
5.37429 5.40877 5.50325 5.55612 5.56998 5.66964 5.68901 5.71271
5.74696 5.82335 6.11700 6.48246 6.50958 6.92546 7.19905 7.23509
7.96863 8.49353 9.29069
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.016435 B = 0.002510 C = 0.002323
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1703.266604 B =11153.261656 C =12052.693414
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.200 4.200
3 C 0.142 3.858
4 N -0.346 5.346
5 C 0.111 3.889
6 C -0.123 4.123
7 C 0.601 3.399
8 O -0.570 6.570
9 N -0.700 5.700
10 C 0.165 3.835
11 H 0.078 0.922
12 C -0.117 4.117
13 C 0.174 3.826
14 N -0.595 5.595
15 C -0.244 4.244
16 H 0.064 0.936
17 C -0.043 4.043
18 N -0.917 5.917
19 Si 0.952 3.048
20 H -0.281 1.281
21 H -0.299 1.299
22 H -0.287 1.287
23 C 0.163 3.837
24 C -0.086 4.086
25 C -0.127 4.127
26 C -0.121 4.121
27 C -0.093 4.093
28 N -0.228 5.228
29 N -0.082 5.082
30 H 0.118 0.882
31 H 0.112 0.888
32 H 0.106 0.894
33 H 0.121 0.879
34 H 0.149 0.851
35 H 0.238 0.762
36 H 0.409 0.591
37 H 0.076 0.924
38 H 0.018 0.982
39 H 0.012 0.988
40 H 0.060 0.940
41 H 0.244 0.756
42 H 0.032 0.968
43 H 0.032 0.968
44 H 0.062 0.938
45 H 0.062 0.938
46 H 0.046 0.954
47 H 0.034 0.966
48 H 0.053 0.947
49 H 0.054 0.946
50 H 0.067 0.933
51 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.180 8.228 -13.098 24.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.218 4.218
3 C 0.024 3.976
4 N -0.131 5.131
5 C -0.047 4.047
6 C -0.263 4.263
7 C 0.386 3.614
8 O -0.448 6.448
9 N -0.349 5.349
10 C 0.061 3.939
11 H 0.096 0.904
12 C -0.157 4.157
13 C 0.050 3.950
14 N -0.316 5.316
15 C -0.374 4.374
16 H 0.081 0.919
17 C -0.239 4.239
18 N -0.563 5.563
19 Si 0.782 3.218
20 H -0.207 1.207
21 H -0.226 1.226
22 H -0.213 1.213
23 C 0.035 3.965
24 C -0.089 4.089
25 C -0.185 4.185
26 C -0.178 4.178
27 C -0.131 4.131
28 N -0.101 5.101
29 N -0.063 5.063
30 H 0.136 0.864
31 H 0.130 0.870
32 H 0.124 0.876
33 H 0.139 0.861
34 H 0.166 0.834
35 H 0.254 0.746
36 H 0.245 0.755
37 H 0.095 0.905
38 H 0.036 0.964
39 H 0.030 0.970
40 H 0.079 0.921
41 H 0.054 0.946
42 H 0.050 0.950
43 H 0.050 0.950
44 H 0.081 0.919
45 H 0.081 0.919
46 H 0.065 0.935
47 H 0.053 0.947
48 H 0.072 0.928
49 H 0.073 0.927
50 H 0.085 0.915
51 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -19.727 7.934 -12.682 24.758
hybrid contribution 1.212 -1.129 0.254 1.676
sum -18.515 6.804 -12.429 23.315
Atomic orbital electron populations
1.24205 0.95250 1.03805 0.94644 1.22875 0.96822 0.97303 1.04847
1.21613 0.92171 0.98484 0.85311 1.50846 1.06944 1.46382 1.08908
1.23860 0.84847 0.95553 1.00474 1.21443 0.94474 1.18384 0.92023
1.17037 0.85517 0.76101 0.82709 1.90776 1.50421 1.51507 1.52144
1.45971 1.10352 1.70899 1.07640 1.20165 0.80111 0.97223 0.96438
0.90392 1.21122 0.96904 0.95763 1.01903 1.19926 0.92262 0.95379
0.87449 1.44306 1.55581 1.03834 1.27910 1.19265 1.11445 0.92807
1.13869 0.91869 1.25451 0.98477 0.98859 1.01120 1.70108 1.26006
1.07996 1.52222 0.85575 0.80371 0.77212 0.78609 1.20680 1.22584
1.21343 1.20633 0.94590 0.84901 0.96420 1.21855 0.95883 0.94527
0.96673 1.21753 1.01211 0.94940 1.00551 1.21642 1.00307 1.00778
0.95068 1.21645 0.98213 0.99070 0.94198 1.74629 0.96883 1.10601
1.28012 1.81897 1.16661 1.22669 0.85055 0.86423 0.86998 0.87620
0.86103 0.83375 0.74601 0.75538 0.90545 0.96380 0.97026 0.92141
0.94620 0.94976 0.94991 0.91901 0.91926 0.93488 0.94661 0.92843
0.92704 0.91497 0.93299
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.98 14.32 67.78 0.97 -0.01 16
2 C -0.20 -1.85 9.72 25.65 0.25 -1.60 16
3 C 0.14 1.02 6.98 85.63 0.60 1.61 16
4 N -0.35 -5.88 3.68 -350.83 -1.29 -7.17 16
5 C 0.11 2.11 11.27 83.85 0.95 3.05 16
6 C -0.12 -3.42 6.99 40.82 0.29 -3.14 16
7 C 0.60 20.24 7.81 86.69 0.68 20.92 16
8 O -0.57 -21.94 16.52 -4.02 -0.07 -22.01 16
9 N -0.70 -23.81 4.95 -450.88 -2.23 -26.04 16
10 C 0.16 6.32 2.16 43.91 0.09 6.42 16
11 H 0.08 3.20 5.17 -2.39 -0.01 3.19 16
12 C -0.12 -5.36 4.74 28.36 0.13 -5.23 16
13 C 0.17 8.61 5.25 83.58 0.44 9.05 16
14 N -0.60 -29.18 2.60 -707.82 -1.84 -31.02 16
15 C -0.24 -12.97 8.94 84.04 0.75 -12.22 16
16 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16
17 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16
18 N -0.92 -51.77 9.42 21.65 0.20 -51.56 16
19 Si 0.95 44.94 29.60 68.60 2.03 46.97 16
20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
21 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16
22 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16
23 C 0.16 6.73 4.00 87.60 0.35 7.08 16
24 C -0.09 -3.02 0.76 -50.90 -0.04 -3.06 16
25 C -0.13 -3.59 8.21 71.98 0.59 -3.00 16
26 C -0.12 -4.24 8.28 71.98 0.60 -3.64 16
27 C -0.09 -3.44 4.15 30.30 0.13 -3.32 16
28 N -0.23 -6.59 12.04 -49.99 -0.60 -7.20 16
29 N -0.08 -2.07 13.64 37.02 0.50 -1.57 16
30 H 0.12 0.45 7.84 -2.91 -0.02 0.43 16
31 H 0.11 0.67 8.06 -2.91 -0.02 0.65 16
32 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16
33 H 0.12 0.46 7.79 -2.39 -0.02 0.44 16
34 H 0.15 0.06 8.08 -2.39 -0.02 0.04 16
35 H 0.24 2.74 8.06 -2.91 -0.02 2.72 16
36 H 0.41 12.83 8.21 -92.71 -0.76 12.07 16
37 H 0.08 3.95 5.29 -2.39 -0.01 3.94 16
38 H 0.02 0.83 8.01 -2.39 -0.02 0.81 16
39 H 0.01 0.56 8.12 -2.39 -0.02 0.54 16
40 H 0.06 3.35 6.05 -2.39 -0.01 3.34 16
41 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16
42 H 0.03 1.30 6.69 -2.39 -0.02 1.28 16
43 H 0.03 1.32 7.81 -2.39 -0.02 1.30 16
44 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16
45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
46 H 0.05 1.35 7.57 -2.38 -0.02 1.34 16
47 H 0.03 1.49 7.45 -2.39 -0.02 1.47 16
48 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16
49 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
50 H 0.07 2.14 7.68 -2.39 -0.02 2.12 16
51 H 0.05 2.16 6.65 -2.39 -0.02 2.14 16
Total: -1.00 -69.44 403.55 4.07 -65.37
By element:
Atomic # 1 Polarization: 23.05 SS G_CDS: 0.17 Total: 23.23 kcal
Atomic # 6 Polarization: 3.80 SS G_CDS: 7.18 Total: 10.98 kcal
Atomic # 7 Polarization: -119.29 SS G_CDS: -5.26 Total: -124.55 kcal
Atomic # 8 Polarization: -21.94 SS G_CDS: -0.07 Total: -22.01 kcal
Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal
Total: -69.44 4.07 -65.37 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001089514009.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 154.130 kcal
(2) G-P(sol) polarization free energy of solvation -69.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.757 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds