Wall clock time and date at job start Wed Apr 1 2020 04:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99571 * 2 1 4 4 N 1.46503 * 109.46898 * 125.00134 * 3 2 1 5 5 C 1.34813 * 126.59600 * 124.99873 * 4 3 2 6 6 C 1.36599 * 106.84219 * 179.97438 * 5 4 3 7 7 C 1.47524 * 125.77102 * 179.97438 * 6 5 4 8 8 O 1.21597 * 119.99715 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99502 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99249 * 179.72738 * 9 7 6 11 11 H 1.08997 * 110.21535 * 33.34315 * 10 9 7 12 12 C 1.52527 * 110.25054 * 271.25239 * 10 9 7 13 13 C 1.46236 * 114.27730 * 151.62175 * 12 10 9 14 14 N 1.50169 * 107.53064 * 58.41167 * 13 12 10 15 15 C 1.36932 * 120.53754 * 109.56755 * 14 13 12 16 16 H 1.07999 * 120.00408 * 156.71010 * 15 14 13 17 17 C 1.38819 * 119.99783 * 336.70386 * 15 14 13 18 18 N 1.31615 * 120.00205 * 340.42032 * 17 15 14 19 19 Si 1.86801 * 119.99606 * 160.41649 * 17 15 14 20 20 H 1.48499 * 109.47196 * 60.00656 * 19 17 15 21 21 H 1.48504 * 109.46639 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47418 * 300.00143 * 19 17 15 23 23 C 1.43432 * 118.92682 * 289.58921 * 14 13 12 24 24 C 1.54906 * 116.08035 * 91.56686 * 23 14 13 25 25 C 1.52999 * 109.35950 * 198.43337 * 24 23 14 26 26 C 1.52997 * 109.24709 * 78.77897 * 24 23 14 27 27 C 1.50131 * 110.24552 * 155.27832 * 10 9 7 28 28 N 1.34403 * 108.45783 * 0.24440 * 6 5 4 29 29 N 1.28763 * 109.51871 * 359.58385 * 28 6 5 30 30 H 1.08008 * 120.00434 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99885 * 179.97438 * 1 2 3 32 32 H 1.07994 * 120.00243 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47713 * 5.00458 * 3 2 1 34 34 H 1.08996 * 109.47170 * 244.99783 * 3 2 1 35 35 H 1.07997 * 126.57745 * 359.97438 * 5 4 3 36 36 H 0.96998 * 120.00518 * 0.02562 * 9 7 6 37 37 H 1.09000 * 108.52570 * 272.86709 * 12 10 9 38 38 H 1.08997 * 108.51779 * 30.38127 * 12 10 9 39 39 H 1.09002 * 109.84484 * 298.90688 * 13 12 10 40 40 H 1.09001 * 109.84585 * 177.91984 * 13 12 10 41 41 H 0.96998 * 120.00235 * 179.97438 * 18 17 15 42 42 H 1.08998 * 108.16097 * 329.84839 * 23 14 13 43 43 H 1.09003 * 108.00223 * 213.16124 * 23 14 13 44 44 H 1.08997 * 109.47111 * 180.68069 * 25 24 23 45 45 H 1.08998 * 109.47332 * 300.68684 * 25 24 23 46 46 H 1.09004 * 109.46978 * 60.68536 * 25 24 23 47 47 H 1.09001 * 109.47369 * 299.38422 * 26 24 23 48 48 H 1.09002 * 109.47604 * 59.38341 * 26 24 23 49 49 H 1.08997 * 109.47528 * 179.38712 * 26 24 23 50 50 H 1.09000 * 109.20884 * 336.99264 * 27 10 9 51 51 H 1.08995 * 109.20992 * 96.35660 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3228 1.5498 1.0741 6 6 4.7898 1.4872 2.3563 7 6 6.1939 1.6659 2.7723 8 8 7.0507 1.8913 1.9395 9 7 6.5267 1.5792 4.0754 10 6 7.9220 1.7508 4.4880 11 1 8.4215 2.4686 3.8374 12 6 8.6499 0.4107 4.4579 13 6 10.0864 0.5124 4.2038 14 7 10.6765 1.3754 5.2818 15 6 11.4824 0.8308 6.2458 16 1 12.1901 1.4534 6.7729 17 6 11.3895 -0.5214 6.5454 18 7 10.3097 -1.1965 6.2131 19 14 12.7972 -1.3829 7.4204 20 1 13.0293 -0.7386 8.7381 21 1 12.4531 -2.8134 7.6221 22 1 14.0283 -1.2818 6.5962 23 6 10.3820 2.7791 5.2858 24 6 9.1496 3.2141 6.1174 25 6 8.6997 4.6055 5.6677 26 6 9.5308 3.2584 7.5985 27 6 7.9889 2.2092 5.9160 28 7 3.7548 1.2295 3.1740 29 7 2.6728 1.1365 2.4823 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4027 -0.9313 35 1 4.9064 1.7377 0.1850 36 1 5.8432 1.3991 4.7397 37 1 8.5022 -0.0852 5.4172 38 1 8.2035 -0.2083 3.6797 39 1 10.2584 0.9688 3.2289 40 1 10.5387 -0.4789 4.2342 41 1 10.2449 -2.1415 6.4221 42 1 10.2252 3.0963 4.2548 43 1 11.2551 3.3054 5.6716 44 1 7.8399 4.9185 6.2600 45 1 9.5156 5.3144 5.8087 46 1 8.4230 4.5749 4.6138 47 1 9.8471 2.2668 7.9222 48 1 10.3479 3.9654 7.7424 49 1 8.6690 3.5747 8.1862 50 1 7.0479 2.6902 6.1827 51 1 8.1464 1.3461 6.5627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089514009.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:07 Heat of formation + Delta-G solvation = 88.756875 kcal Electronic energy + Delta-G solvation = -31496.551781 eV Core-core repulsion = 27433.846539 eV Total energy + Delta-G solvation = -4062.705242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.22289 -41.06207 -39.51681 -36.91544 -36.21963 -35.91992 -33.82917 -33.26584 -32.50425 -31.55483 -29.11462 -28.02029 -28.00019 -27.27055 -25.39782 -24.62579 -23.38072 -22.98691 -21.79225 -21.47232 -20.92226 -19.67953 -18.86361 -18.53461 -17.28859 -17.23425 -17.03397 -16.78530 -16.13814 -15.87304 -15.78674 -15.68268 -15.44277 -15.20769 -15.06819 -14.65011 -14.55625 -14.13088 -13.82360 -13.51485 -13.47178 -13.22375 -13.06654 -13.01323 -12.87286 -12.61610 -12.51163 -12.48639 -12.35465 -12.32398 -12.21375 -11.91544 -11.67302 -11.54585 -11.39254 -11.36903 -11.09583 -11.05132 -10.93605 -10.58070 -10.44923 -10.32650 -9.85270 -8.58649 -7.75301 -5.14773 0.15147 0.63551 0.79301 1.50245 1.53337 1.58218 1.59376 2.17104 2.29550 2.59018 3.19987 3.37223 3.43451 3.61740 3.79503 3.83612 3.97758 4.00526 4.09452 4.11154 4.11982 4.42591 4.48409 4.51084 4.54072 4.57073 4.72413 4.80096 4.82546 4.93302 4.93726 4.96783 4.99063 5.10818 5.14473 5.24983 5.29261 5.33531 5.37429 5.40877 5.50325 5.55612 5.56998 5.66964 5.68901 5.71271 5.74696 5.82335 6.11700 6.48246 6.50958 6.92546 7.19905 7.23509 7.96863 8.49353 9.29069 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.002510 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.266604 B =11153.261656 C =12052.693414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.200 4.200 3 C 0.142 3.858 4 N -0.346 5.346 5 C 0.111 3.889 6 C -0.123 4.123 7 C 0.601 3.399 8 O -0.570 6.570 9 N -0.700 5.700 10 C 0.165 3.835 11 H 0.078 0.922 12 C -0.117 4.117 13 C 0.174 3.826 14 N -0.595 5.595 15 C -0.244 4.244 16 H 0.064 0.936 17 C -0.043 4.043 18 N -0.917 5.917 19 Si 0.952 3.048 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.287 1.287 23 C 0.163 3.837 24 C -0.086 4.086 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.093 4.093 28 N -0.228 5.228 29 N -0.082 5.082 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.149 0.851 35 H 0.238 0.762 36 H 0.409 0.591 37 H 0.076 0.924 38 H 0.018 0.982 39 H 0.012 0.988 40 H 0.060 0.940 41 H 0.244 0.756 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.034 0.966 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.067 0.933 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.180 8.228 -13.098 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.218 4.218 3 C 0.024 3.976 4 N -0.131 5.131 5 C -0.047 4.047 6 C -0.263 4.263 7 C 0.386 3.614 8 O -0.448 6.448 9 N -0.349 5.349 10 C 0.061 3.939 11 H 0.096 0.904 12 C -0.157 4.157 13 C 0.050 3.950 14 N -0.316 5.316 15 C -0.374 4.374 16 H 0.081 0.919 17 C -0.239 4.239 18 N -0.563 5.563 19 Si 0.782 3.218 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.213 1.213 23 C 0.035 3.965 24 C -0.089 4.089 25 C -0.185 4.185 26 C -0.178 4.178 27 C -0.131 4.131 28 N -0.101 5.101 29 N -0.063 5.063 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.254 0.746 36 H 0.245 0.755 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.030 0.970 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.727 7.934 -12.682 24.758 hybrid contribution 1.212 -1.129 0.254 1.676 sum -18.515 6.804 -12.429 23.315 Atomic orbital electron populations 1.24205 0.95250 1.03805 0.94644 1.22875 0.96822 0.97303 1.04847 1.21613 0.92171 0.98484 0.85311 1.50846 1.06944 1.46382 1.08908 1.23860 0.84847 0.95553 1.00474 1.21443 0.94474 1.18384 0.92023 1.17037 0.85517 0.76101 0.82709 1.90776 1.50421 1.51507 1.52144 1.45971 1.10352 1.70899 1.07640 1.20165 0.80111 0.97223 0.96438 0.90392 1.21122 0.96904 0.95763 1.01903 1.19926 0.92262 0.95379 0.87449 1.44306 1.55581 1.03834 1.27910 1.19265 1.11445 0.92807 1.13869 0.91869 1.25451 0.98477 0.98859 1.01120 1.70108 1.26006 1.07996 1.52222 0.85575 0.80371 0.77212 0.78609 1.20680 1.22584 1.21343 1.20633 0.94590 0.84901 0.96420 1.21855 0.95883 0.94527 0.96673 1.21753 1.01211 0.94940 1.00551 1.21642 1.00307 1.00778 0.95068 1.21645 0.98213 0.99070 0.94198 1.74629 0.96883 1.10601 1.28012 1.81897 1.16661 1.22669 0.85055 0.86423 0.86998 0.87620 0.86103 0.83375 0.74601 0.75538 0.90545 0.96380 0.97026 0.92141 0.94620 0.94976 0.94991 0.91901 0.91926 0.93488 0.94661 0.92843 0.92704 0.91497 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 14.32 67.78 0.97 -0.01 16 2 C -0.20 -1.85 9.72 25.65 0.25 -1.60 16 3 C 0.14 1.02 6.98 85.63 0.60 1.61 16 4 N -0.35 -5.88 3.68 -350.83 -1.29 -7.17 16 5 C 0.11 2.11 11.27 83.85 0.95 3.05 16 6 C -0.12 -3.42 6.99 40.82 0.29 -3.14 16 7 C 0.60 20.24 7.81 86.69 0.68 20.92 16 8 O -0.57 -21.94 16.52 -4.02 -0.07 -22.01 16 9 N -0.70 -23.81 4.95 -450.88 -2.23 -26.04 16 10 C 0.16 6.32 2.16 43.91 0.09 6.42 16 11 H 0.08 3.20 5.17 -2.39 -0.01 3.19 16 12 C -0.12 -5.36 4.74 28.36 0.13 -5.23 16 13 C 0.17 8.61 5.25 83.58 0.44 9.05 16 14 N -0.60 -29.18 2.60 -707.82 -1.84 -31.02 16 15 C -0.24 -12.97 8.94 84.04 0.75 -12.22 16 16 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 17 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 18 N -0.92 -51.77 9.42 21.65 0.20 -51.56 16 19 Si 0.95 44.94 29.60 68.60 2.03 46.97 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 23 C 0.16 6.73 4.00 87.60 0.35 7.08 16 24 C -0.09 -3.02 0.76 -50.90 -0.04 -3.06 16 25 C -0.13 -3.59 8.21 71.98 0.59 -3.00 16 26 C -0.12 -4.24 8.28 71.98 0.60 -3.64 16 27 C -0.09 -3.44 4.15 30.30 0.13 -3.32 16 28 N -0.23 -6.59 12.04 -49.99 -0.60 -7.20 16 29 N -0.08 -2.07 13.64 37.02 0.50 -1.57 16 30 H 0.12 0.45 7.84 -2.91 -0.02 0.43 16 31 H 0.11 0.67 8.06 -2.91 -0.02 0.65 16 32 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.12 0.46 7.79 -2.39 -0.02 0.44 16 34 H 0.15 0.06 8.08 -2.39 -0.02 0.04 16 35 H 0.24 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.41 12.83 8.21 -92.71 -0.76 12.07 16 37 H 0.08 3.95 5.29 -2.39 -0.01 3.94 16 38 H 0.02 0.83 8.01 -2.39 -0.02 0.81 16 39 H 0.01 0.56 8.12 -2.39 -0.02 0.54 16 40 H 0.06 3.35 6.05 -2.39 -0.01 3.34 16 41 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 42 H 0.03 1.30 6.69 -2.39 -0.02 1.28 16 43 H 0.03 1.32 7.81 -2.39 -0.02 1.30 16 44 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.05 1.35 7.57 -2.38 -0.02 1.34 16 47 H 0.03 1.49 7.45 -2.39 -0.02 1.47 16 48 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 49 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.07 2.14 7.68 -2.39 -0.02 2.12 16 51 H 0.05 2.16 6.65 -2.39 -0.02 2.14 16 Total: -1.00 -69.44 403.55 4.07 -65.37 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.17 Total: 23.23 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 7.18 Total: 10.98 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -5.26 Total: -124.55 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.07 Total: -22.01 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.44 4.07 -65.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089514009.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.130 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds