Wall clock time and date at job start Wed Apr 1 2020 04:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99877 * 2 1 4 4 N 1.46499 * 109.46941 * 124.99814 * 3 2 1 5 5 C 1.34815 * 126.59083 * 125.00067 * 4 3 2 6 6 C 1.36599 * 106.84007 * 179.74084 * 5 4 3 7 7 C 1.47525 * 125.77028 * 180.02562 * 6 5 4 8 8 O 1.21593 * 120.00327 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99710 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99796 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46959 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.58426 * 60.09003 * 11 10 9 13 13 C 1.53193 * 109.58675 * 180.36941 * 11 10 9 14 14 C 1.53069 * 109.29507 * 174.28171 * 13 11 10 15 15 C 1.53036 * 109.66171 * 298.84877 * 14 13 11 16 16 C 1.53007 * 109.49772 * 301.35153 * 15 14 13 17 17 C 1.52995 * 109.50203 * 181.25240 * 15 14 13 18 18 C 1.53193 * 109.31221 * 61.30049 * 15 14 13 19 19 N 1.46923 * 109.59036 * 299.80476 * 11 10 9 20 20 C 1.36939 * 120.62780 * 6.58737 * 19 11 10 21 21 H 1.08005 * 119.99847 * 328.94140 * 20 19 11 22 22 C 1.38812 * 120.00119 * 148.95149 * 20 19 11 23 23 N 1.31619 * 119.99840 * 346.00939 * 22 20 19 24 24 Si 1.86794 * 120.00180 * 166.01077 * 22 20 19 25 25 H 1.48506 * 109.47308 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47114 * 119.99914 * 24 22 20 27 27 H 1.48500 * 109.47762 * 239.99786 * 24 22 20 28 28 N 1.34401 * 108.45592 * 359.97438 * 6 5 4 29 29 N 1.28754 * 109.52444 * 0.02562 * 28 6 5 30 30 H 1.08001 * 119.99902 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00290 * 359.97438 * 1 2 3 32 32 H 1.08002 * 120.00108 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47026 * 5.00416 * 3 2 1 34 34 H 1.09000 * 109.47622 * 245.00344 * 3 2 1 35 35 H 1.08000 * 126.58234 * 359.70353 * 5 4 3 36 36 H 0.96999 * 120.00505 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.47247 * 300.00093 * 10 9 7 38 38 H 1.09004 * 109.46777 * 60.00133 * 10 9 7 39 39 H 1.08995 * 109.50053 * 294.37785 * 13 11 10 40 40 H 1.09004 * 109.49525 * 54.47486 * 13 11 10 41 41 H 1.09001 * 109.45314 * 178.76106 * 14 13 11 42 42 H 1.09001 * 109.34977 * 58.87694 * 14 13 11 43 43 H 1.09001 * 109.47018 * 179.83805 * 16 15 14 44 44 H 1.08997 * 109.46781 * 299.83395 * 16 15 14 45 45 H 1.08999 * 109.47192 * 59.83404 * 16 15 14 46 46 H 1.08995 * 109.47137 * 300.16200 * 17 15 14 47 47 H 1.09001 * 109.47053 * 60.16143 * 17 15 14 48 48 H 1.09002 * 109.47597 * 180.16116 * 17 15 14 49 49 H 1.09008 * 109.58806 * 185.58367 * 18 15 14 50 50 H 1.08995 * 109.70321 * 65.22352 * 18 15 14 51 51 H 0.96995 * 120.00041 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3229 1.5497 1.0740 6 6 4.7891 1.4924 2.3567 7 6 6.1926 1.6740 2.7731 8 8 7.0500 1.8963 1.9401 9 7 6.5245 1.5936 4.0769 10 6 7.9185 1.7734 4.4903 11 6 8.0214 1.6351 6.0105 12 1 7.6806 0.6443 6.3112 13 6 9.4767 1.8318 6.4468 14 6 9.5505 1.8344 7.9757 15 6 8.7163 2.9917 8.5295 16 6 9.2405 4.3143 7.9665 17 6 8.8177 3.0097 10.0560 18 6 7.2530 2.8045 8.1165 19 7 7.1887 2.6592 6.6559 20 6 6.3686 3.4632 5.9101 21 1 6.6463 3.7303 4.9012 22 6 5.1804 3.9350 6.4510 23 7 4.7037 3.4033 7.5566 24 14 4.2580 5.3244 5.6097 25 1 4.9979 5.7441 4.3923 26 1 2.9011 4.8576 5.2273 27 1 4.1412 6.4759 6.5401 28 7 3.7526 1.2437 3.1754 29 7 2.6719 1.1423 2.4829 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6213 1.4027 -0.9314 35 1 4.9072 1.7336 0.1846 36 1 5.8406 1.4160 4.7414 37 1 8.5396 1.0154 4.0132 38 1 8.2610 2.7643 4.1920 39 1 10.0877 1.0200 6.0522 40 1 9.8453 2.7839 6.0651 41 1 10.5878 1.9521 8.2888 42 1 9.1610 0.8907 8.3576 43 1 8.6442 5.1380 8.3590 44 1 10.2816 4.4470 8.2606 45 1 9.1692 4.3000 6.8789 46 1 8.4454 2.0667 10.4560 47 1 9.8590 3.1429 10.3493 48 1 8.2211 3.8324 10.4502 49 1 6.6725 3.6748 8.4230 50 1 6.8488 1.9102 8.5909 51 1 3.8737 3.7332 7.9348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089707516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:07 Heat of formation + Delta-G solvation = 100.665228 kcal Electronic energy + Delta-G solvation = -31832.706624 eV Core-core repulsion = 27770.517767 eV Total energy + Delta-G solvation = -4062.188857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.95141 -39.10902 -38.20026 -36.10328 -35.01742 -33.14849 -32.83688 -32.03149 -30.59481 -29.90306 -27.72723 -26.91309 -26.55008 -25.39141 -24.01109 -22.53907 -22.21295 -21.99158 -20.58474 -20.01656 -19.66408 -17.90559 -17.83268 -16.45269 -15.93727 -15.72057 -15.51021 -15.43866 -15.35197 -14.37229 -14.32822 -14.07025 -13.83545 -13.78189 -13.50135 -13.32117 -13.21579 -12.88764 -12.63289 -12.35338 -12.10160 -11.96038 -11.76004 -11.59236 -11.34263 -11.21399 -11.08174 -11.02564 -10.79678 -10.71575 -10.53326 -10.32767 -10.31254 -10.04470 -9.99382 -9.94831 -9.73108 -9.58054 -9.35536 -9.17976 -9.05147 -8.47541 -8.12672 -6.53780 -5.73817 -3.18759 1.31066 1.54916 2.12313 2.40780 3.40082 3.49892 3.50346 3.75714 3.89230 4.24170 4.38030 4.51122 4.53573 4.66274 5.00865 5.06779 5.24011 5.29114 5.39764 5.42802 5.48704 5.52445 5.57116 5.68050 5.82100 5.92560 6.03795 6.09614 6.10869 6.16757 6.19711 6.23581 6.29809 6.39356 6.43264 6.47336 6.51476 6.53421 6.54211 6.58446 6.71545 6.97151 7.00781 7.08481 7.18919 7.22670 7.46021 7.74725 7.90350 8.12483 8.42042 8.51074 8.87668 9.27118 9.88442 10.46095 11.33561 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.003166 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.283367 B = 8840.831974 C = 9802.375393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.178 4.178 3 C 0.152 3.848 4 N -0.367 5.367 5 C 0.081 3.919 6 C -0.089 4.089 7 C 0.594 3.406 8 O -0.566 6.566 9 N -0.674 5.674 10 C 0.134 3.866 11 C 0.160 3.840 12 H 0.031 0.969 13 C -0.129 4.129 14 C -0.095 4.095 15 C -0.095 4.095 16 C -0.124 4.124 17 C -0.133 4.133 18 C 0.188 3.812 19 N -0.584 5.584 20 C -0.250 4.250 21 H 0.069 0.931 22 C 0.018 3.982 23 N -0.894 5.894 24 Si 0.887 3.113 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.290 1.290 28 N -0.188 5.188 29 N -0.064 5.064 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.201 0.799 36 H 0.424 0.576 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.030 0.970 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.041 0.959 48 H 0.050 0.950 49 H 0.085 0.915 50 H 0.017 0.983 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 -5.545 -10.882 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.197 4.197 3 C 0.032 3.968 4 N -0.153 5.153 5 C -0.076 4.076 6 C -0.228 4.228 7 C 0.377 3.623 8 O -0.446 6.446 9 N -0.324 5.324 10 C 0.011 3.989 11 C 0.052 3.948 12 H 0.049 0.951 13 C -0.169 4.169 14 C -0.133 4.133 15 C -0.097 4.097 16 C -0.181 4.181 17 C -0.191 4.191 18 C 0.062 3.938 19 N -0.307 5.307 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.182 4.182 23 N -0.538 5.538 24 Si 0.717 3.283 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 N -0.062 5.062 29 N -0.045 5.045 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.218 0.782 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.103 0.897 50 H 0.035 0.965 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.330 -5.621 -10.380 11.879 hybrid contribution -0.310 0.953 -0.843 1.309 sum -1.640 -4.668 -11.224 12.266 Atomic orbital electron populations 1.23971 0.95498 1.02729 0.96759 1.22881 0.96347 0.97471 1.02967 1.21024 0.91992 0.98000 0.85810 1.50536 1.06512 1.49090 1.09116 1.23312 0.84593 0.98950 1.00699 1.21643 0.95888 1.15140 0.90112 1.16738 0.84570 0.77637 0.83337 1.90728 1.49328 1.52316 1.52265 1.45869 1.11383 1.68176 1.06926 1.21345 0.81630 1.01044 0.94925 1.20727 0.91020 0.93013 0.89991 0.95113 1.22007 0.97615 1.01105 0.96188 1.21404 0.98274 0.98261 0.95332 1.21243 1.00084 0.94734 0.93618 1.21695 0.97812 0.96431 1.02145 1.21753 0.99985 1.01178 0.96174 1.20796 0.89193 1.00689 0.83128 1.44014 1.47391 1.36873 1.02457 1.19136 0.97855 1.22729 0.98264 0.91374 1.24965 0.96045 0.99463 0.97744 1.69991 1.20709 1.41287 1.21807 0.86452 0.80104 0.82641 0.79084 1.20471 1.21658 1.21711 1.74800 0.96235 1.08888 1.26228 1.82046 1.17352 1.22138 0.82928 0.87486 0.87949 0.86485 0.88260 0.87079 0.78185 0.73668 0.92510 0.91382 0.93122 0.91645 0.93723 0.92972 0.93689 0.95138 0.91548 0.93353 0.94036 0.93077 0.89669 0.96472 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 14.32 29.01 0.42 -0.62 16 2 C -0.18 -1.40 9.72 -36.03 -0.35 -1.75 16 3 C 0.15 1.22 6.98 -5.19 -0.04 1.19 16 4 N -0.37 -4.83 3.68 -62.24 -0.23 -5.06 16 5 C 0.08 1.12 11.27 -16.83 -0.19 0.93 16 6 C -0.09 -1.62 6.99 -83.55 -0.58 -2.21 16 7 C 0.59 11.89 7.82 -12.47 -0.10 11.79 16 8 O -0.57 -11.92 16.86 5.28 0.09 -11.83 16 9 N -0.67 -13.80 3.84 -61.35 -0.24 -14.04 16 10 C 0.13 2.58 4.43 -4.04 -0.02 2.56 16 11 C 0.16 3.10 3.01 -67.60 -0.20 2.90 16 12 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 13 C -0.13 -2.16 5.04 -26.60 -0.13 -2.29 16 14 C -0.10 -1.56 4.70 -26.68 -0.13 -1.69 16 15 C -0.10 -1.73 0.77 -154.39 -0.12 -1.84 16 16 C -0.12 -2.23 7.99 37.16 0.30 -1.93 16 17 C -0.13 -2.14 8.48 37.16 0.32 -1.83 16 18 C 0.19 4.21 3.95 -3.71 -0.01 4.19 16 19 N -0.58 -13.29 2.41 -164.77 -0.40 -13.69 16 20 C -0.25 -6.34 6.97 -15.06 -0.10 -6.44 16 21 H 0.07 1.79 5.86 -52.48 -0.31 1.48 16 22 C 0.02 0.47 4.97 -17.43 -0.09 0.39 16 23 N -0.89 -25.00 11.23 55.49 0.62 -24.37 16 24 Si 0.89 22.22 29.58 -169.99 -5.03 17.19 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 N -0.19 -3.75 12.04 32.85 0.40 -3.36 16 29 N -0.06 -1.14 13.64 60.35 0.82 -0.31 16 30 H 0.11 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.10 0.61 7.84 -52.49 -0.41 0.19 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.10 0.70 7.79 -51.93 -0.40 0.30 16 34 H 0.11 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.20 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.42 9.48 7.08 -40.82 -0.29 9.19 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.40 7.42 -51.93 -0.39 1.01 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.12 6.35 -51.93 -0.33 0.79 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 1.30 5.98 -51.93 -0.31 0.99 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.09 2.18 6.19 -51.92 -0.32 1.86 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 406.64 15.07 6.13 6.13 Total: -1.00 -31.45 406.64 -7.10 -38.55 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.23 Total: 7.44 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.04 Total: 3.34 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.98 Total: -60.83 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.45 -7.10 -38.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089707516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.219 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds