Wall clock time and date at job start Wed Apr 1 2020 04:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99877 * 2 1 4 4 N 1.46499 * 109.46941 * 124.99814 * 3 2 1 5 5 C 1.34815 * 126.59083 * 125.00067 * 4 3 2 6 6 C 1.36599 * 106.84007 * 179.74084 * 5 4 3 7 7 C 1.47525 * 125.77028 * 180.02562 * 6 5 4 8 8 O 1.21593 * 120.00327 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99710 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99796 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46959 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.58426 * 60.09003 * 11 10 9 13 13 C 1.53193 * 109.58675 * 180.36941 * 11 10 9 14 14 C 1.53069 * 109.29507 * 174.28171 * 13 11 10 15 15 C 1.53036 * 109.66171 * 298.84877 * 14 13 11 16 16 C 1.53007 * 109.49772 * 301.35153 * 15 14 13 17 17 C 1.52995 * 109.50203 * 181.25240 * 15 14 13 18 18 C 1.53193 * 109.31221 * 61.30049 * 15 14 13 19 19 N 1.46923 * 109.59036 * 299.80476 * 11 10 9 20 20 C 1.36939 * 120.62780 * 6.58737 * 19 11 10 21 21 H 1.08005 * 119.99847 * 328.94140 * 20 19 11 22 22 C 1.38812 * 120.00119 * 148.95149 * 20 19 11 23 23 N 1.31619 * 119.99840 * 346.00939 * 22 20 19 24 24 Si 1.86794 * 120.00180 * 166.01077 * 22 20 19 25 25 H 1.48506 * 109.47308 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47114 * 119.99914 * 24 22 20 27 27 H 1.48500 * 109.47762 * 239.99786 * 24 22 20 28 28 N 1.34401 * 108.45592 * 359.97438 * 6 5 4 29 29 N 1.28754 * 109.52444 * 0.02562 * 28 6 5 30 30 H 1.08001 * 119.99902 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00290 * 359.97438 * 1 2 3 32 32 H 1.08002 * 120.00108 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47026 * 5.00416 * 3 2 1 34 34 H 1.09000 * 109.47622 * 245.00344 * 3 2 1 35 35 H 1.08000 * 126.58234 * 359.70353 * 5 4 3 36 36 H 0.96999 * 120.00505 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.47247 * 300.00093 * 10 9 7 38 38 H 1.09004 * 109.46777 * 60.00133 * 10 9 7 39 39 H 1.08995 * 109.50053 * 294.37785 * 13 11 10 40 40 H 1.09004 * 109.49525 * 54.47486 * 13 11 10 41 41 H 1.09001 * 109.45314 * 178.76106 * 14 13 11 42 42 H 1.09001 * 109.34977 * 58.87694 * 14 13 11 43 43 H 1.09001 * 109.47018 * 179.83805 * 16 15 14 44 44 H 1.08997 * 109.46781 * 299.83395 * 16 15 14 45 45 H 1.08999 * 109.47192 * 59.83404 * 16 15 14 46 46 H 1.08995 * 109.47137 * 300.16200 * 17 15 14 47 47 H 1.09001 * 109.47053 * 60.16143 * 17 15 14 48 48 H 1.09002 * 109.47597 * 180.16116 * 17 15 14 49 49 H 1.09008 * 109.58806 * 185.58367 * 18 15 14 50 50 H 1.08995 * 109.70321 * 65.22352 * 18 15 14 51 51 H 0.96995 * 120.00041 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3229 1.5497 1.0740 6 6 4.7891 1.4924 2.3567 7 6 6.1926 1.6740 2.7731 8 8 7.0500 1.8963 1.9401 9 7 6.5245 1.5936 4.0769 10 6 7.9185 1.7734 4.4903 11 6 8.0214 1.6351 6.0105 12 1 7.6806 0.6443 6.3112 13 6 9.4767 1.8318 6.4468 14 6 9.5505 1.8344 7.9757 15 6 8.7163 2.9917 8.5295 16 6 9.2405 4.3143 7.9665 17 6 8.8177 3.0097 10.0560 18 6 7.2530 2.8045 8.1165 19 7 7.1887 2.6592 6.6559 20 6 6.3686 3.4632 5.9101 21 1 6.6463 3.7303 4.9012 22 6 5.1804 3.9350 6.4510 23 7 4.7037 3.4033 7.5566 24 14 4.2580 5.3244 5.6097 25 1 4.9979 5.7441 4.3923 26 1 2.9011 4.8576 5.2273 27 1 4.1412 6.4759 6.5401 28 7 3.7526 1.2437 3.1754 29 7 2.6719 1.1423 2.4829 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6213 1.4027 -0.9314 35 1 4.9072 1.7336 0.1846 36 1 5.8406 1.4160 4.7414 37 1 8.5396 1.0154 4.0132 38 1 8.2610 2.7643 4.1920 39 1 10.0877 1.0200 6.0522 40 1 9.8453 2.7839 6.0651 41 1 10.5878 1.9521 8.2888 42 1 9.1610 0.8907 8.3576 43 1 8.6442 5.1380 8.3590 44 1 10.2816 4.4470 8.2606 45 1 9.1692 4.3000 6.8789 46 1 8.4454 2.0667 10.4560 47 1 9.8590 3.1429 10.3493 48 1 8.2211 3.8324 10.4502 49 1 6.6725 3.6748 8.4230 50 1 6.8488 1.9102 8.5909 51 1 3.8737 3.7332 7.9348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089707516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:06 Heat of formation + Delta-G solvation = 81.010112 kcal Electronic energy + Delta-G solvation = -31833.558934 eV Core-core repulsion = 27770.517767 eV Total energy + Delta-G solvation = -4063.041167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.17821 -40.68392 -39.74582 -36.91412 -36.59411 -34.96230 -33.90757 -33.49442 -31.86840 -31.70302 -29.01322 -27.97912 -27.92056 -27.29349 -25.46639 -24.13278 -23.59738 -23.19159 -21.66647 -21.51481 -20.79511 -19.44442 -19.19622 -18.07900 -17.31232 -17.05903 -16.97439 -16.85876 -16.13238 -16.05515 -15.66140 -15.52193 -15.29947 -15.28480 -14.92307 -14.70653 -14.55553 -14.45440 -13.87972 -13.74998 -13.47426 -13.11822 -13.03262 -12.98485 -12.85539 -12.72756 -12.50204 -12.48352 -12.46526 -12.24793 -12.18106 -12.07349 -11.84912 -11.60733 -11.35486 -11.23047 -11.14378 -10.89783 -10.82317 -10.58425 -10.46404 -10.31428 -9.76497 -8.47124 -7.78793 -5.22567 0.18168 0.70729 0.80668 1.34791 1.40525 1.45062 1.61191 2.28824 2.43286 2.51078 3.28789 3.38344 3.47158 3.64194 3.79036 3.86798 4.00756 4.03646 4.07809 4.09760 4.23845 4.36172 4.45105 4.49070 4.51680 4.56597 4.68694 4.74579 4.84068 4.90554 4.91359 4.96803 5.00203 5.09178 5.14164 5.17502 5.20063 5.29432 5.43623 5.44618 5.52148 5.55215 5.57210 5.62375 5.65729 5.68191 5.76499 5.86215 5.93461 6.49592 6.63183 6.99659 7.25835 7.28568 7.95548 8.47905 9.25939 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.003166 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.283367 B = 8840.831974 C = 9802.375393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.195 4.195 3 C 0.140 3.860 4 N -0.348 5.348 5 C 0.108 3.892 6 C -0.125 4.125 7 C 0.594 3.406 8 O -0.580 6.580 9 N -0.684 5.684 10 C 0.139 3.861 11 C 0.158 3.842 12 H 0.025 0.975 13 C -0.122 4.122 14 C -0.091 4.091 15 C -0.092 4.092 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.196 3.804 19 N -0.595 5.595 20 C -0.222 4.222 21 H 0.061 0.939 22 C -0.027 4.027 23 N -0.922 5.922 24 Si 0.927 3.073 25 H -0.278 1.278 26 H -0.304 1.304 27 H -0.291 1.291 28 N -0.230 5.230 29 N -0.093 5.093 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.153 0.847 35 H 0.244 0.756 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.027 0.973 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.047 0.953 50 H -0.010 1.010 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 -5.958 -12.709 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.214 4.214 3 C 0.022 3.978 4 N -0.133 5.133 5 C -0.049 4.049 6 C -0.266 4.266 7 C 0.379 3.621 8 O -0.461 6.461 9 N -0.332 5.332 10 C 0.015 3.985 11 C 0.052 3.948 12 H 0.043 0.957 13 C -0.161 4.161 14 C -0.129 4.129 15 C -0.093 4.093 16 C -0.173 4.173 17 C -0.186 4.186 18 C 0.071 3.929 19 N -0.318 5.318 20 C -0.353 4.353 21 H 0.078 0.922 22 C -0.223 4.223 23 N -0.568 5.568 24 Si 0.759 3.241 25 H -0.204 1.204 26 H -0.232 1.232 27 H -0.219 1.219 28 N -0.103 5.103 29 N -0.073 5.073 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.171 0.829 35 H 0.260 0.740 36 H 0.250 0.750 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.008 0.992 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.422 -6.038 -12.230 13.646 hybrid contribution -0.914 1.018 -0.432 1.435 sum -0.492 -5.020 -12.661 13.629 Atomic orbital electron populations 1.24196 0.95337 1.03720 0.94970 1.22875 0.96741 0.97238 1.04528 1.21614 0.92205 0.98534 0.85406 1.50901 1.07052 1.46542 1.08804 1.23869 0.84808 0.95941 1.00331 1.21674 0.95023 1.17999 0.91857 1.16968 0.85393 0.76861 0.82893 1.90698 1.49997 1.53096 1.52313 1.45956 1.11509 1.68616 1.07112 1.21369 0.81490 1.00876 0.94766 1.20900 0.92383 0.91501 0.90040 0.95746 1.21942 0.95349 1.02265 0.96576 1.21389 0.99495 0.97106 0.94863 1.21141 0.96989 0.95911 0.95274 1.21611 0.99333 0.95618 1.00785 1.21703 1.01642 1.00919 0.94324 1.20578 0.91883 0.97692 0.82794 1.44179 1.47393 1.37605 1.02644 1.19121 0.97216 1.21326 0.97612 0.92181 1.25342 0.97132 1.01315 0.98545 1.70097 1.20912 1.42709 1.23131 0.85807 0.78654 0.81317 0.78355 1.20360 1.23247 1.21851 1.74768 0.97183 1.10390 1.27977 1.81919 1.16985 1.23312 0.85094 0.86620 0.86946 0.87024 0.86964 0.82930 0.74026 0.74993 0.90253 0.92869 0.89988 0.91782 0.90611 0.93039 0.95370 0.92038 0.93327 0.93239 0.91143 0.94111 0.93405 0.99154 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 14.32 67.78 0.97 -0.72 16 2 C -0.19 -2.70 9.72 25.64 0.25 -2.45 16 3 C 0.14 1.86 6.98 85.63 0.60 2.45 16 4 N -0.35 -8.57 3.68 -350.83 -1.29 -9.86 16 5 C 0.11 2.81 11.27 83.85 0.95 3.75 16 6 C -0.13 -4.59 6.99 40.82 0.29 -4.30 16 7 C 0.59 23.86 7.82 86.69 0.68 24.54 16 8 O -0.58 -23.93 16.86 -4.01 -0.07 -24.00 16 9 N -0.68 -28.53 3.84 -466.27 -1.79 -30.32 16 10 C 0.14 5.25 4.43 86.38 0.38 5.63 16 11 C 0.16 6.07 3.01 44.97 0.14 6.20 16 12 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 13 C -0.12 -3.76 5.04 30.68 0.15 -3.60 16 14 C -0.09 -2.72 4.70 30.63 0.14 -2.58 16 15 C -0.09 -3.22 0.77 -52.10 -0.04 -3.26 16 16 C -0.12 -4.02 7.99 71.98 0.58 -3.45 16 17 C -0.13 -3.91 8.48 71.98 0.61 -3.30 16 18 C 0.20 9.04 3.95 86.36 0.34 9.38 16 19 N -0.59 -27.61 2.41 -675.22 -1.63 -29.24 16 20 C -0.22 -11.57 6.97 84.03 0.59 -10.98 16 21 H 0.06 3.23 5.86 -2.91 -0.02 3.22 16 22 C -0.03 -1.50 4.97 84.86 0.42 -1.08 16 23 N -0.92 -54.11 11.23 21.65 0.24 -53.86 16 24 Si 0.93 47.33 29.58 68.60 2.03 49.36 16 25 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.30 -16.15 7.11 99.48 0.71 -15.45 16 27 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 28 N -0.23 -9.46 12.04 -49.99 -0.60 -10.06 16 29 N -0.09 -3.30 13.64 37.02 0.50 -2.80 16 30 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 31 H 0.11 1.08 7.84 -2.91 -0.02 1.06 16 32 H 0.11 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.11 1.27 7.79 -2.39 -0.02 1.25 16 34 H 0.15 0.77 8.08 -2.39 -0.02 0.75 16 35 H 0.24 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.41 19.23 7.08 -92.71 -0.66 18.57 16 37 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.05 2.17 7.42 -2.38 -0.02 2.16 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 2.03 6.35 -2.39 -0.02 2.01 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.05 1.84 5.98 -2.39 -0.01 1.83 16 46 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.05 2.56 6.19 -2.38 -0.01 2.55 16 50 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 51 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -72.68 406.64 4.71 -67.97 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.27 Total: 26.57 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 7.04 Total: 16.24 kcal Atomic # 7 Polarization: -131.58 SS G_CDS: -4.56 Total: -136.14 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.07 Total: -24.00 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -72.68 4.71 -67.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089707516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.983 kcal (2) G-P(sol) polarization free energy of solvation -72.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds