Wall clock time and date at job start Wed Apr 1 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36601 * 126.57905 * 2 1 4 4 C 1.47514 * 125.76864 * 0.04496 * 3 2 1 5 5 O 1.21597 * 120.00590 * 359.71374 * 4 3 2 6 6 N 1.34786 * 119.99792 * 179.71376 * 4 3 2 7 7 C 1.47195 * 126.70066 * 359.97438 * 6 4 3 8 8 C 1.53742 * 106.42605 * 211.40455 * 7 6 4 9 9 H 1.09000 * 112.28941 * 104.36038 * 8 7 6 10 10 C 1.54453 * 109.01420 * 229.45937 * 8 7 6 11 11 N 1.48330 * 104.32810 * 137.92673 * 10 8 7 12 12 C 1.36935 * 128.20135 * 138.17300 * 11 10 8 13 13 H 1.08001 * 119.99922 * 200.25331 * 12 11 10 14 14 C 1.38814 * 119.99628 * 20.25431 * 12 11 10 15 15 N 1.31610 * 119.99992 * 20.58792 * 14 12 11 16 16 Si 1.86800 * 119.99547 * 200.58740 * 14 12 11 17 17 H 1.48500 * 109.46795 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47005 * 60.00532 * 16 14 12 19 19 H 1.48496 * 109.47387 * 300.00458 * 16 14 12 20 20 C 1.48340 * 103.60245 * 318.43075 * 11 10 8 21 21 C 1.54072 * 104.51234 * 41.53387 * 20 11 10 22 22 C 1.52995 * 112.57840 * 97.43645 * 21 20 11 23 23 C 1.47191 * 126.70357 * 180.02562 * 6 4 3 24 24 N 1.34407 * 108.45639 * 179.77823 * 3 2 1 25 25 N 1.28765 * 109.52162 * 0.23290 * 24 3 2 26 26 N 1.34815 * 126.58283 * 180.17921 * 2 1 3 27 27 C 1.46502 * 126.59163 * 359.97438 * 26 2 1 28 28 C 1.53007 * 109.46596 * 120.25180 * 27 26 2 29 29 C 1.52996 * 109.47402 * 240.24929 * 27 26 2 30 30 H 1.08995 * 109.47488 * 90.02193 * 1 2 3 31 31 H 1.09003 * 109.47184 * 210.02148 * 1 2 3 32 32 H 1.08996 * 109.46901 * 330.01896 * 1 2 3 33 33 H 1.08994 * 110.06343 * 92.16330 * 7 6 4 34 34 H 1.08997 * 110.06268 * 330.64405 * 7 6 4 35 35 H 1.08999 * 110.45748 * 19.21241 * 10 8 7 36 36 H 1.09002 * 110.45849 * 256.63868 * 10 8 7 37 37 H 0.96993 * 120.00739 * 5.84331 * 15 14 12 38 38 H 1.08993 * 110.45952 * 160.27825 * 20 11 10 39 39 H 1.08993 * 110.46325 * 282.86102 * 20 11 10 40 40 H 1.09000 * 109.47387 * 302.11447 * 22 21 20 41 41 H 1.09001 * 109.47075 * 62.10756 * 22 21 20 42 42 H 1.08997 * 109.47282 * 182.10821 * 22 21 20 43 43 H 1.09000 * 110.06361 * 267.84153 * 23 6 4 44 44 H 1.09006 * 110.06282 * 29.30162 * 23 6 4 45 45 H 1.08996 * 109.47315 * 0.25726 * 27 26 2 46 46 H 1.09001 * 109.46795 * 180.02562 * 28 27 26 47 47 H 1.09002 * 109.46965 * 299.99765 * 28 27 26 48 48 H 1.08994 * 109.47319 * 60.00039 * 28 27 26 49 49 H 1.09006 * 109.46913 * 60.00498 * 29 27 26 50 50 H 1.09001 * 109.47079 * 180.02562 * 29 27 26 51 51 H 1.08994 * 109.47121 * 300.00333 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5026 0.0009 5 8 0.6859 2.7628 -0.0035 6 7 2.7817 3.4988 0.0067 7 6 4.2465 3.3539 0.0130 8 6 4.7996 4.5623 0.7859 9 1 5.1275 4.2956 1.7906 10 6 5.9258 5.2175 -0.0435 11 7 5.6842 6.6744 0.0957 12 6 6.6032 7.6701 0.2932 13 1 6.2900 8.6217 0.6967 14 6 7.9373 7.4564 -0.0253 15 7 8.2679 6.4997 -0.8664 16 14 9.2632 8.5267 0.7402 17 1 10.5945 8.0986 0.2405 18 1 9.2203 8.3868 2.2180 19 1 9.0289 9.9456 0.3702 20 6 4.2106 6.7965 -0.0232 21 6 3.6578 5.6142 0.7955 22 6 3.2508 6.0207 2.2131 23 6 2.5022 4.9439 0.0089 24 7 3.5984 0.6789 0.0049 25 7 3.6299 -0.6084 0.0031 26 7 2.3105 -1.0826 -0.0034 27 6 1.8864 -2.4849 -0.0072 28 6 2.4340 -3.1797 -1.2556 29 6 2.4243 -3.1838 1.2429 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 4.6269 3.3572 -1.0084 34 1 4.5285 2.4282 0.5146 35 1 5.8531 4.9173 -1.0888 36 1 6.9018 4.9525 0.3630 37 1 7.5770 6.0000 -1.3286 38 1 3.8715 7.7425 0.3989 39 1 3.9041 6.7116 -1.0657 40 1 4.1093 6.4515 2.7283 41 1 2.4493 6.7578 2.1638 42 1 2.9036 5.1424 2.7574 43 1 2.4729 5.3207 -1.0135 44 1 1.5526 5.1403 0.5069 45 1 0.7976 -2.5352 -0.0116 46 1 2.1182 -4.2230 -1.2587 47 1 2.0507 -2.6817 -2.1462 48 1 3.5228 -3.1294 -1.2513 49 1 2.0342 -2.6888 2.1322 50 1 2.1092 -4.2273 1.2397 51 1 3.5131 -3.1335 1.2471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092145433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:10 Heat of formation + Delta-G solvation = 69.206089 kcal Electronic energy + Delta-G solvation = -31707.000740 eV Core-core repulsion = 27643.447712 eV Total energy + Delta-G solvation = -4063.553028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.39897 -41.53448 -39.68204 -37.41365 -36.82087 -34.64271 -34.01589 -32.62302 -31.96678 -31.46224 -29.14236 -28.29482 -27.90660 -27.22544 -26.78059 -25.11195 -24.44773 -23.17600 -22.23501 -21.33431 -20.53173 -19.99558 -19.33697 -18.32312 -17.50514 -17.30847 -17.00573 -16.60411 -16.22604 -15.92006 -15.61148 -15.42807 -15.32551 -15.28856 -14.92839 -14.42057 -14.31582 -14.12743 -14.04053 -13.99975 -13.69734 -13.58008 -13.24052 -13.21976 -13.13242 -12.88751 -12.85715 -12.57463 -12.54178 -12.49005 -12.37048 -12.29428 -11.94158 -11.90157 -11.66812 -11.59146 -11.54138 -11.38580 -11.16834 -11.07572 -10.60113 -10.28778 -9.75581 -9.03366 -8.30598 -5.35390 0.08457 0.55431 1.02759 1.58333 1.67162 1.84441 1.85253 2.12195 2.65191 3.02663 3.21909 3.24886 3.34330 3.39273 3.53291 3.66118 3.78955 3.79474 3.85934 3.95841 4.07166 4.09820 4.14686 4.26767 4.36382 4.39956 4.58826 4.60294 4.61821 4.63635 4.68882 4.70233 4.73719 4.78297 4.81748 4.86316 4.87623 4.94716 5.02066 5.08344 5.11105 5.16708 5.16972 5.21186 5.26975 5.29105 5.40284 5.55854 5.65748 6.29962 6.36460 6.77399 6.85061 7.03545 7.68145 8.36607 9.05673 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.002600 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.430857 B =10766.495423 C =11846.038755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.135 3.865 3 C -0.132 4.132 4 C 0.620 3.380 5 O -0.557 6.557 6 N -0.601 5.601 7 C 0.119 3.881 8 C -0.101 4.101 9 H 0.085 0.915 10 C 0.152 3.848 11 N -0.623 5.623 12 C -0.328 4.328 13 H 0.065 0.935 14 C -0.084 4.084 15 N -0.956 5.956 16 Si 1.122 2.878 17 H -0.293 1.293 18 H -0.279 1.279 19 H -0.273 1.273 20 C 0.137 3.863 21 C -0.074 4.074 22 C -0.112 4.112 23 C 0.124 3.876 24 N -0.227 5.227 25 N -0.088 5.088 26 N -0.344 5.344 27 C 0.132 3.868 28 C -0.160 4.160 29 C -0.160 4.160 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.014 0.986 36 H 0.033 0.967 37 H 0.255 0.745 38 H 0.057 0.943 39 H 0.025 0.975 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.146 0.854 46 H 0.114 0.886 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.059 0.941 50 H 0.114 0.886 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.001 -21.596 3.750 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.005 4.005 3 C -0.272 4.272 4 C 0.408 3.592 5 O -0.436 6.436 6 N -0.331 5.331 7 C -0.004 4.004 8 C -0.122 4.122 9 H 0.104 0.896 10 C 0.026 3.974 11 N -0.348 5.348 12 C -0.457 4.457 13 H 0.083 0.917 14 C -0.279 4.279 15 N -0.599 5.599 16 Si 0.946 3.054 17 H -0.219 1.219 18 H -0.205 1.205 19 H -0.199 1.199 20 C 0.011 3.989 21 C -0.076 4.076 22 C -0.169 4.169 23 C 0.002 3.998 24 N -0.099 5.099 25 N -0.067 5.067 26 N -0.131 5.131 27 C 0.033 3.967 28 C -0.218 4.218 29 C -0.218 4.218 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.032 0.968 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.163 0.837 46 H 0.133 0.867 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.132 0.868 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.471 -21.622 3.877 28.068 hybrid contribution -1.817 0.217 -0.602 1.926 sum -19.288 -21.405 3.276 28.999 Atomic orbital electron populations 1.20851 0.82057 1.06356 1.05790 1.22352 0.97509 0.85555 0.95061 1.21153 0.89705 0.95172 1.21133 1.16504 0.84286 0.82402 0.75996 1.90718 1.15620 1.83817 1.53488 1.48294 1.07205 1.06461 1.71183 1.22252 0.78690 0.99303 1.00168 1.22965 0.95820 0.94119 0.99319 0.89649 1.21672 0.96054 0.84534 0.95162 1.45387 1.02331 1.01955 1.85114 1.20053 0.90771 0.95533 1.39315 0.91741 1.27263 1.00120 1.02501 0.98032 1.70871 1.36403 1.26277 1.26393 0.82764 0.73163 0.74058 0.75454 1.21935 1.20521 1.19912 1.21900 0.84272 0.96597 0.96105 1.22423 0.93330 0.94953 0.96906 1.21504 1.01125 1.01293 0.92967 1.22349 0.98668 0.78565 1.00242 1.74667 1.19772 1.04714 1.10795 1.81870 0.98315 1.02978 1.23495 1.51011 1.05108 1.08594 1.48409 1.22226 1.02547 0.72978 0.98971 1.22167 1.01908 1.02594 0.95084 1.22174 1.01986 1.02565 0.95061 0.87614 0.86936 0.88554 0.92308 0.88254 0.96800 0.94822 0.93471 0.92448 0.95725 0.93386 0.90755 0.92138 0.91164 0.89030 0.83674 0.86739 0.92321 0.92746 0.92196 0.86757 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.40 71.24 0.67 -0.48 16 2 C 0.13 2.81 7.02 41.72 0.29 3.10 16 3 C -0.13 -3.82 6.85 40.81 0.28 -3.54 16 4 C 0.62 19.78 7.88 86.69 0.68 20.46 16 5 O -0.56 -18.30 14.95 -4.02 -0.06 -18.36 16 6 N -0.60 -19.77 3.32 -816.60 -2.71 -22.48 16 7 C 0.12 4.19 5.99 86.50 0.52 4.71 16 8 C -0.10 -3.89 3.71 -9.28 -0.03 -3.93 16 9 H 0.09 3.27 7.93 -2.39 -0.02 3.25 16 10 C 0.15 7.38 4.61 86.52 0.40 7.78 16 11 N -0.62 -32.34 3.25 -687.67 -2.24 -34.58 16 12 C -0.33 -18.84 10.26 84.03 0.86 -17.98 16 13 H 0.06 3.62 7.91 -2.91 -0.02 3.60 16 14 C -0.08 -4.95 5.20 84.86 0.44 -4.51 16 15 N -0.96 -60.41 12.71 21.65 0.28 -60.13 16 16 Si 1.12 52.19 29.97 68.60 2.06 54.25 16 17 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C 0.14 5.70 6.40 86.39 0.55 6.25 16 21 C -0.07 -2.56 1.10 -50.35 -0.06 -2.62 16 22 C -0.11 -3.39 8.64 71.98 0.62 -2.77 16 23 C 0.12 3.92 6.26 86.94 0.54 4.46 16 24 N -0.23 -7.16 9.35 -49.99 -0.47 -7.63 16 25 N -0.09 -2.41 13.67 37.02 0.51 -1.91 16 26 N -0.34 -6.54 3.28 -313.38 -1.03 -7.57 16 27 C 0.13 1.17 3.68 44.99 0.17 1.33 16 28 C -0.16 -1.30 9.47 71.98 0.68 -0.62 16 29 C -0.16 -1.25 9.47 71.98 0.68 -0.57 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.11 0.51 7.20 -2.39 -0.02 0.50 16 32 H 0.10 1.63 6.43 -2.39 -0.02 1.61 16 33 H 0.06 2.20 7.11 -2.39 -0.02 2.18 16 34 H 0.10 3.48 5.71 -2.39 -0.01 3.47 16 35 H 0.01 0.72 6.80 -2.39 -0.02 0.70 16 36 H 0.03 1.84 7.16 -2.39 -0.02 1.82 16 37 H 0.25 16.32 6.10 -92.71 -0.57 15.76 16 38 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 39 H 0.02 1.04 7.18 -2.39 -0.02 1.02 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 2.24 7.15 -2.39 -0.02 2.22 16 44 H 0.09 2.65 7.64 -2.38 -0.02 2.64 16 45 H 0.15 0.27 6.79 -2.39 -0.02 0.25 16 46 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 50 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 51 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -77.55 398.20 4.77 -72.77 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.14 Total: 14.55 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 7.30 Total: 11.09 kcal Atomic # 7 Polarization: -128.63 SS G_CDS: -5.66 Total: -134.30 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.06 Total: -18.36 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 2.06 Total: 54.25 kcal Total: -77.55 4.77 -72.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092145433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.980 kcal (2) G-P(sol) polarization free energy of solvation -77.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds