Wall clock time and date at job start Wed Apr 1 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30842 * 126.46405 * 2 1 4 4 N 1.28907 * 109.73942 * 179.97438 * 3 2 1 5 5 C 1.29847 * 109.48112 * 359.96787 * 4 3 2 6 6 N 1.34693 * 126.46520 * 180.02562 * 2 1 3 7 7 C 1.46257 * 128.84843 * 0.18000 * 6 2 1 8 8 C 1.53318 * 108.73064 * 162.86308 * 7 6 2 9 9 H 1.08999 * 109.45078 * 290.25692 * 8 7 6 10 10 C 1.50704 * 109.45052 * 170.32655 * 8 7 6 11 11 O 1.21279 * 120.00026 * 359.88472 * 10 8 7 12 12 N 1.34772 * 119.99579 * 179.88875 * 10 8 7 13 13 C 1.46504 * 119.99742 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.47304 * 180.02562 * 13 12 10 15 15 H 1.08994 * 110.88952 * 51.11269 * 14 13 12 16 16 C 1.54912 * 110.99938 * 287.19446 * 14 13 12 17 17 N 1.47426 * 104.83242 * 204.91503 * 16 14 13 18 18 C 1.36933 * 125.65085 * 204.17505 * 17 16 14 19 19 H 1.07998 * 120.00165 * 354.82689 * 18 17 16 20 20 C 1.38813 * 119.99917 * 174.83120 * 18 17 16 21 21 N 1.31615 * 120.00385 * 7.06401 * 20 18 17 22 22 Si 1.86806 * 119.99973 * 187.06490 * 20 18 17 23 23 H 1.48498 * 109.47044 * 94.98252 * 22 20 18 24 24 H 1.48496 * 109.46991 * 214.98781 * 22 20 18 25 25 H 1.48507 * 109.46841 * 334.98309 * 22 20 18 26 26 C 1.47029 * 108.70114 * 24.12948 * 17 16 14 27 27 C 1.54322 * 107.27172 * 358.93966 * 26 17 16 28 28 H 1.09001 * 110.71661 * 96.16971 * 27 26 17 29 29 C 1.52992 * 110.87523 * 219.37543 * 27 26 17 30 30 C 1.53137 * 109.58232 * 50.29313 * 8 7 6 31 31 C 1.50795 * 128.52382 * 180.08866 * 5 4 3 32 32 H 1.09007 * 109.46721 * 89.97112 * 1 2 3 33 33 H 1.08996 * 109.47217 * 209.97195 * 1 2 3 34 34 H 1.09000 * 109.47253 * 329.97381 * 1 2 3 35 35 H 1.09000 * 109.59479 * 43.08497 * 7 6 2 36 36 H 1.09006 * 109.59128 * 282.63922 * 7 6 2 37 37 H 0.96993 * 120.00566 * 359.97438 * 12 10 8 38 38 H 1.09001 * 109.46811 * 299.99615 * 13 12 10 39 39 H 1.09000 * 109.47360 * 59.99476 * 13 12 10 40 40 H 1.09006 * 110.36976 * 323.75354 * 16 14 13 41 41 H 1.08998 * 110.36947 * 86.07941 * 16 14 13 42 42 H 0.97003 * 120.00383 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.87912 * 239.52501 * 26 17 16 44 44 H 1.09002 * 109.88164 * 118.35837 * 26 17 16 45 45 H 1.08997 * 109.47559 * 173.60840 * 29 27 26 46 46 H 1.09004 * 109.47235 * 293.61328 * 29 27 26 47 47 H 1.09002 * 109.47198 * 53.60474 * 29 27 26 48 48 H 1.09002 * 109.49869 * 50.51167 * 30 8 7 49 49 H 1.08997 * 109.49974 * 170.61625 * 30 8 7 50 50 H 1.08998 * 109.73694 * 44.48679 * 31 5 4 51 51 H 1.09001 * 109.73435 * 283.79626 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 0.0005 5 6 3.5816 -0.6157 0.0016 6 7 2.3075 -1.0832 -0.0005 7 6 1.9367 -2.4980 -0.0047 8 6 3.1551 -3.3250 -0.4314 9 1 3.3622 -3.1483 -1.4868 10 6 2.8690 -4.7887 -0.2148 11 8 1.7989 -5.1369 0.2376 12 7 3.8022 -5.7106 -0.5238 13 6 3.5238 -7.1336 -0.3138 14 6 4.7387 -7.9595 -0.7413 15 1 5.6489 -7.5817 -0.2756 16 6 4.8746 -7.9893 -2.2842 17 7 5.6212 -9.2272 -2.5734 18 6 6.3738 -9.4622 -3.6930 19 1 6.3895 -8.7388 -4.4947 20 6 7.1165 -10.6303 -3.7974 21 7 6.9909 -11.5736 -2.8882 22 14 8.2943 -10.8634 -5.2285 23 1 9.6604 -10.4509 -4.8176 24 1 8.3086 -12.2930 -5.6300 25 1 7.8501 -10.0315 -6.3758 26 6 5.4248 -10.1673 -1.4601 27 6 4.5311 -9.4627 -0.4178 28 1 3.4868 -9.7453 -0.5512 29 6 4.9982 -9.7798 1.0042 30 6 4.3719 -2.9144 0.4029 31 6 4.8051 -1.4970 0.0044 32 1 -0.3633 0.0005 -1.0278 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3634 0.8897 0.5142 35 1 1.1203 -2.6598 -0.7086 36 1 1.6241 -2.7969 0.9959 37 1 4.6578 -5.4322 -0.8859 38 1 3.3172 -7.3114 0.7416 39 1 2.6579 -7.4260 -0.9078 40 1 3.8902 -8.0222 -2.7512 41 1 5.4320 -7.1200 -2.6328 42 1 7.5102 -12.3897 -2.9610 43 1 6.3867 -10.4193 -1.0138 44 1 4.9327 -11.0707 -1.8202 45 1 4.4264 -9.1842 1.7158 46 1 4.8435 -10.8390 1.2098 47 1 6.0576 -9.5421 1.1001 48 1 4.1099 -2.9309 1.4609 49 1 5.1905 -3.6102 0.2193 50 1 5.5303 -1.1178 0.7243 51 1 5.2485 -1.5144 -0.9912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093222880.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:15 Heat of formation + Delta-G solvation = 50.874815 kcal Electronic energy + Delta-G solvation = -30654.637468 eV Core-core repulsion = 26590.289537 eV Total energy + Delta-G solvation = -4064.347931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.63033 -40.38955 -38.27569 -37.11336 -35.01068 -34.43501 -33.06851 -32.00153 -30.90724 -30.82167 -29.37065 -27.69577 -26.26312 -25.65779 -24.73025 -23.66410 -22.78687 -21.73085 -20.97711 -20.16633 -19.94090 -19.27895 -17.86578 -16.99569 -16.87181 -16.51451 -16.26535 -15.77253 -15.36575 -14.98802 -14.63160 -14.50106 -14.35410 -14.23864 -13.86545 -13.77253 -13.49337 -13.27329 -13.05310 -13.02052 -12.69555 -12.61128 -12.57249 -11.99664 -11.89796 -11.76527 -11.69745 -11.53699 -11.47052 -11.32574 -10.87632 -10.86726 -10.60900 -10.46047 -10.33630 -10.16432 -10.07192 -10.02594 -9.79586 -9.66186 -9.26651 -9.20254 -8.65321 -6.91169 -5.79916 -3.12680 1.48894 2.02565 2.26991 2.57240 2.90597 3.34447 3.39928 3.42014 3.63065 3.84570 4.00774 4.05562 4.14632 4.42238 4.47507 4.56122 4.65180 4.73740 4.85189 4.97048 5.02049 5.06680 5.07916 5.15881 5.20826 5.26059 5.31556 5.44379 5.45222 5.45518 5.50102 5.63359 5.64534 5.73954 5.88442 5.91120 5.96346 6.07572 6.15989 6.22262 6.38590 6.45879 6.52247 6.52613 6.64877 6.82700 7.23870 7.48599 7.56486 7.75970 7.89836 8.18139 8.45933 9.14061 9.74663 10.40545 11.31957 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.002070 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.445233 B =13522.213421 C =14393.094116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.300 5.300 4 N -0.290 5.290 5 C 0.173 3.827 6 N -0.470 5.470 7 C 0.124 3.876 8 C -0.125 4.125 9 H 0.113 0.887 10 C 0.523 3.477 11 O -0.541 6.541 12 N -0.716 5.716 13 C 0.132 3.868 14 C -0.113 4.113 15 H 0.081 0.919 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.232 4.232 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.182 3.818 27 C -0.110 4.110 28 H 0.067 0.933 29 C -0.134 4.134 30 C -0.119 4.119 31 C -0.032 4.032 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.404 0.596 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.018 0.982 41 H 0.036 0.964 42 H 0.253 0.747 43 H 0.051 0.949 44 H 0.040 0.960 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.106 0.894 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 16.654 9.073 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.141 5.141 4 N -0.130 5.130 5 C -0.095 4.095 6 N -0.161 5.161 7 C 0.001 3.999 8 C -0.147 4.147 9 H 0.131 0.869 10 C 0.308 3.692 11 O -0.419 6.419 12 N -0.367 5.367 13 C 0.008 3.992 14 C -0.133 4.133 15 H 0.099 0.901 16 C 0.015 3.985 17 N -0.332 5.332 18 C -0.360 4.360 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.058 3.942 27 C -0.130 4.130 28 H 0.086 0.914 29 C -0.192 4.192 30 C -0.157 4.157 31 C -0.071 4.071 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.239 0.761 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.035 0.965 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.113 0.887 50 H 0.124 0.876 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.621 17.635 9.298 22.136 hybrid contribution 0.629 -1.495 -1.038 1.926 sum -8.992 16.140 8.260 20.238 Atomic orbital electron populations 1.20234 0.83640 1.04667 1.04167 1.24688 0.97138 0.82701 1.04288 1.74493 0.96125 1.23676 1.19836 1.74053 1.12305 1.08042 1.18576 1.24722 0.87058 0.92608 1.05099 1.46004 1.07010 1.08466 1.54618 1.21757 0.97640 0.75263 1.05202 1.21638 0.96346 0.93058 1.03617 0.86896 1.19957 0.84332 0.86895 0.78037 1.90736 1.24240 1.81969 1.44925 1.46045 1.18352 1.07321 1.64983 1.21472 0.98529 0.77986 1.01182 1.22687 0.96447 0.95715 0.98454 0.90055 1.21586 0.95039 0.90700 0.91128 1.44463 1.56602 1.11622 1.20542 1.19035 1.19067 1.03444 0.94429 0.90480 1.24826 1.00143 0.96635 0.98677 1.69969 1.43472 1.07389 1.35731 0.86133 0.81280 0.77116 0.81447 1.21575 1.21738 1.20640 1.21237 0.96351 0.91195 0.85452 1.22433 1.00530 0.93658 0.96368 0.91441 1.21693 1.00931 1.01060 0.95517 1.21758 0.96825 0.96608 1.00533 1.20237 0.91216 0.90815 1.04860 0.89502 0.90245 0.88612 0.87845 0.87912 0.76150 0.91389 0.91166 0.96458 0.94608 0.93694 0.93110 0.94194 0.93681 0.92716 0.92677 0.90107 0.88652 0.87553 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.28 36.00 0.37 -0.03 16 2 C 0.18 1.82 8.07 -155.45 -1.25 0.57 16 3 N -0.30 -4.05 12.23 32.70 0.40 -3.65 16 4 N -0.29 -3.93 12.21 32.76 0.40 -3.53 16 5 C 0.17 1.76 7.75 -155.29 -1.20 0.56 16 6 N -0.47 -4.32 3.11 -110.86 -0.35 -4.66 16 7 C 0.12 0.91 5.46 -4.01 -0.02 0.89 16 8 C -0.12 -0.84 2.54 -91.53 -0.23 -1.07 16 9 H 0.11 0.66 8.12 -51.93 -0.42 0.23 16 10 C 0.52 5.03 7.15 -10.99 -0.08 4.95 16 11 O -0.54 -7.10 15.83 5.56 0.09 -7.01 16 12 N -0.72 -6.81 5.33 -60.29 -0.32 -7.13 16 13 C 0.13 1.58 5.13 -4.04 -0.02 1.56 16 14 C -0.11 -1.64 2.49 -88.47 -0.22 -1.87 16 15 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 16 C 0.14 2.59 6.65 -2.53 -0.02 2.58 16 17 N -0.61 -14.53 3.39 -170.07 -0.58 -15.11 16 18 C -0.23 -6.19 10.27 -15.06 -0.15 -6.34 16 19 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 20 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 21 N -0.92 -26.13 10.36 55.49 0.57 -25.56 16 22 Si 0.91 21.42 29.56 -169.99 -5.02 16.40 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.18 4.14 4.98 -3.06 -0.02 4.12 16 27 C -0.11 -1.83 3.01 -88.79 -0.27 -2.10 16 28 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 29 C -0.13 -1.91 9.17 37.15 0.34 -1.57 16 30 C -0.12 -0.64 5.23 -26.42 -0.14 -0.78 16 31 C -0.03 -0.20 6.34 -27.59 -0.17 -0.37 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.35 8.04 -51.93 -0.42 -0.07 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.78 7.79 -51.93 -0.40 0.37 16 37 H 0.40 3.09 7.81 -40.82 -0.32 2.77 16 38 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 39 H 0.07 0.94 7.96 -51.93 -0.41 0.52 16 40 H 0.02 0.33 7.91 -51.93 -0.41 -0.08 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 1.28 6.93 -51.93 -0.36 0.92 16 44 H 0.04 1.03 7.61 -51.93 -0.40 0.63 16 45 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 48 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 49 H 0.09 0.38 7.32 -51.93 -0.38 0.00 16 50 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -34.83 404.41 -10.44 -45.27 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.54 Total: -1.94 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.18 Total: 0.83 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.13 Total: -59.64 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: 0.09 Total: -7.01 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.83 -10.44 -45.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093222880.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.144 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds