Wall clock time and date at job start Wed Apr 1 2020 04:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.01545 * 2 1 4 4 C 1.54261 * 110.03258 * 238.55935 * 2 1 3 5 5 C 1.54893 * 104.19735 * 264.32196 * 4 2 1 6 6 C 1.55011 * 102.75504 * 322.04809 * 5 4 2 7 7 C 1.53879 * 110.03225 * 121.39156 * 2 1 3 8 8 H 1.08994 * 110.03218 * 238.61578 * 7 2 1 9 9 C 1.50693 * 110.03261 * 0.02562 * 7 2 1 10 10 O 1.21288 * 120.00189 * 94.87507 * 9 7 2 11 11 N 1.34778 * 120.00347 * 274.87158 * 9 7 2 12 12 C 1.46497 * 120.00329 * 179.97438 * 11 9 7 13 13 C 1.50697 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.35354 * 126.75331 * 95.00240 * 13 12 11 15 15 N 1.35313 * 106.17675 * 179.97438 * 14 13 12 16 16 C 1.46492 * 125.86825 * 179.97438 * 15 14 13 17 17 C 1.53499 * 114.21042 * 275.00732 * 16 15 14 18 18 N 1.47067 * 87.98602 * 87.51820 * 17 16 15 19 19 C 1.36938 * 136.05515 * 207.09111 * 18 17 16 20 20 H 1.08001 * 120.00125 * 355.00701 * 19 18 17 21 21 C 1.38814 * 119.99978 * 175.01237 * 19 18 17 22 22 N 1.31615 * 119.99971 * 184.65054 * 21 19 18 23 23 Si 1.86801 * 119.99893 * 4.64671 * 21 19 18 24 24 H 1.48498 * 109.47195 * 174.38575 * 23 21 19 25 25 H 1.48498 * 109.47117 * 294.39183 * 23 21 19 26 26 H 1.48509 * 109.47090 * 54.38920 * 23 21 19 27 27 C 1.47067 * 87.88508 * 27.34357 * 18 17 16 28 28 N 1.28710 * 108.26098 * 0.26674 * 15 14 13 29 29 N 1.28639 * 110.18289 * 359.55423 * 28 15 14 30 30 H 1.09000 * 109.47182 * 303.53598 * 1 2 3 31 31 H 1.08999 * 109.47506 * 63.54408 * 1 2 3 32 32 H 1.09005 * 109.46809 * 183.54463 * 1 2 3 33 33 H 1.08998 * 109.47269 * 181.38748 * 3 2 1 34 34 H 1.08999 * 109.47198 * 301.39432 * 3 2 1 35 35 H 1.09008 * 109.46923 * 61.39148 * 3 2 1 36 36 H 1.09005 * 110.48977 * 22.99979 * 4 2 1 37 37 H 1.09004 * 110.48875 * 145.64483 * 4 2 1 38 38 H 1.09007 * 110.75457 * 80.37581 * 5 4 2 39 39 H 1.09003 * 110.75716 * 203.55774 * 5 4 2 40 40 H 1.08993 * 110.50185 * 279.29517 * 6 5 4 41 41 H 1.09002 * 110.52082 * 156.61318 * 6 5 4 42 42 H 0.97005 * 119.99579 * 0.02562 * 11 9 7 43 43 H 1.08998 * 109.47110 * 60.00073 * 12 11 9 44 44 H 1.08996 * 109.47401 * 300.00370 * 12 11 9 45 45 H 1.07997 * 126.90650 * 0.02562 * 14 13 12 46 46 H 1.08997 * 113.41807 * 141.80287 * 16 15 14 47 47 H 1.09007 * 113.46461 * 332.73938 * 17 16 15 48 48 H 1.08997 * 113.52457 * 202.30920 * 17 16 15 49 49 H 0.97001 * 120.00106 * 4.99830 * 22 21 19 50 50 H 1.09002 * 113.46005 * 87.43830 * 27 18 17 51 51 H 1.09000 * 113.46432 * 217.87604 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0584 -0.7560 -1.2365 5 6 2.3282 -2.1905 -0.7182 6 6 2.8883 -1.9403 0.7054 7 6 2.0571 -0.7530 1.2341 8 1 2.6860 -0.0944 1.8329 9 6 0.9038 -1.2588 2.0617 10 8 0.4976 -2.3912 1.9079 11 7 0.3238 -0.4529 2.9730 12 6 -0.7978 -0.9444 3.7772 13 6 -1.2608 0.1436 4.7115 14 6 -2.2686 1.0212 4.4965 15 7 -2.3253 1.8070 5.5966 16 6 -3.2669 2.9072 5.8178 17 6 -2.8221 4.2472 5.2155 18 7 -3.4708 3.8390 3.9603 19 6 -3.3036 4.1141 2.6292 20 1 -2.5793 4.8519 2.3171 21 6 -4.0652 3.4447 1.6812 22 7 -3.8417 3.6413 0.3992 23 14 -5.4074 2.2647 2.2250 24 1 -6.1583 1.7872 1.0362 25 1 -4.7947 1.1055 2.9222 26 1 -6.3363 2.9636 3.1493 27 6 -4.3819 3.0105 4.7641 28 7 -1.4058 1.4257 6.4125 29 7 -0.7569 0.4318 5.9167 30 1 -0.3633 0.5677 0.8566 31 1 -0.3634 0.4578 -0.9200 32 1 -0.3633 -1.0258 0.0635 33 1 3.1433 1.4274 -0.0249 34 1 1.6751 1.9622 -0.8772 35 1 1.7157 1.9474 0.9023 36 1 1.3061 -0.7705 -2.0252 37 1 2.9811 -0.3007 -1.5965 38 1 1.4032 -2.7655 -0.6740 39 1 3.0653 -2.6948 -1.3431 40 1 3.9446 -1.6758 0.6590 41 1 2.7412 -2.8188 1.3337 42 1 0.6485 0.4529 3.0959 43 1 -0.4772 -1.8098 4.3572 44 1 -1.6181 -1.2315 3.1196 45 1 -2.9008 1.0814 3.6230 46 1 -3.6198 2.9751 6.8469 47 1 -1.7399 4.3477 5.1321 48 1 -3.2907 5.1121 5.6849 49 1 -3.0987 4.1970 0.1160 50 1 -5.2623 3.5489 5.1151 51 1 -4.6286 2.0574 4.2962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094310951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:19 Heat of formation + Delta-G solvation = 117.044532 kcal Electronic energy + Delta-G solvation = -32250.360054 eV Core-core repulsion = 28188.881457 eV Total energy + Delta-G solvation = -4061.478597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.07482 -40.59538 -38.98300 -37.69719 -35.06350 -33.32693 -32.31757 -32.10281 -31.22352 -29.42765 -28.39931 -27.37192 -26.50820 -25.78609 -24.55869 -24.09946 -21.81570 -21.69967 -21.04608 -20.23381 -19.68425 -18.80146 -17.90201 -17.25274 -16.95318 -16.29096 -15.88096 -15.53580 -15.07119 -15.01617 -14.55159 -14.42260 -14.35626 -14.11138 -13.64263 -13.51010 -13.34841 -13.29393 -13.07954 -12.89295 -12.49279 -12.29496 -11.92736 -11.74687 -11.67887 -11.64567 -11.32954 -11.30814 -11.11688 -10.90971 -10.88896 -10.73643 -10.67734 -10.61527 -10.51971 -10.46058 -9.87605 -9.64743 -9.48189 -9.43047 -9.21342 -8.94689 -8.91320 -7.51129 -6.54308 -3.51617 1.86453 2.49698 2.56786 2.78269 3.05798 3.18570 3.40302 3.54611 4.14013 4.31826 4.36605 4.39896 4.50476 4.52106 4.64663 4.99350 5.06056 5.10495 5.20610 5.21740 5.27187 5.32842 5.33414 5.36108 5.44365 5.48076 5.61712 5.67516 5.70999 5.75282 5.76467 5.78411 5.81504 5.89388 5.92376 5.94965 6.01728 6.07281 6.08758 6.13255 6.14715 6.27689 6.30853 6.32422 6.34933 6.49562 6.51925 6.68125 6.95672 7.62585 7.99169 8.35320 8.70753 8.75030 9.20393 9.99866 10.95940 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.003875 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.445490 B = 7224.571131 C = 8602.901979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.105 4.105 7 C -0.107 4.107 8 H 0.090 0.910 9 C 0.531 3.469 10 O -0.544 6.544 11 N -0.723 5.723 12 C 0.216 3.784 13 C -0.067 4.067 14 C 0.013 3.987 15 N -0.258 5.258 16 C 0.086 3.914 17 C 0.120 3.880 18 N -0.622 5.622 19 C -0.310 4.310 20 H 0.085 0.915 21 C -0.016 4.016 22 N -0.923 5.923 23 Si 1.063 2.937 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.085 3.915 28 N -0.093 5.093 29 N -0.260 5.260 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.402 0.598 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.192 0.808 46 H 0.124 0.876 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.264 0.736 50 H 0.074 0.926 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.713 -6.242 3.090 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.053 4.053 3 C -0.198 4.198 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.143 4.143 7 C -0.129 4.129 8 H 0.109 0.891 9 C 0.318 3.682 10 O -0.421 6.421 11 N -0.374 5.374 12 C 0.091 3.909 13 C -0.205 4.205 14 C -0.141 4.141 15 N -0.048 5.048 16 C -0.018 4.018 17 C -0.008 4.008 18 N -0.351 5.351 19 C -0.435 4.435 20 H 0.103 0.897 21 C -0.216 4.216 22 N -0.563 5.563 23 Si 0.896 3.104 24 H -0.215 1.215 25 H -0.221 1.221 26 H -0.214 1.214 27 C -0.041 4.041 28 N -0.072 5.072 29 N -0.128 5.128 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.237 0.763 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.209 0.791 46 H 0.142 0.858 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.074 0.926 50 H 0.091 0.909 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.870 -7.695 3.534 11.560 hybrid contribution 0.533 1.812 -0.245 1.905 sum 8.403 -5.883 3.288 10.772 Atomic orbital electron populations 1.22127 0.93372 1.02522 1.03119 1.21067 0.96292 0.94926 0.93031 1.21947 1.00389 0.94893 1.02569 1.22506 1.00743 0.95263 0.96702 1.22491 1.01250 0.96724 0.95445 1.22248 0.97921 0.97051 0.97089 1.22110 0.95391 0.98790 0.96560 0.89136 1.20385 0.83722 0.85164 0.78939 1.90670 1.64533 1.19165 1.67779 1.46120 1.34937 1.17181 1.39202 1.19233 0.89227 0.92232 0.90213 1.21701 0.99742 1.02892 0.96162 1.23698 1.02593 0.93321 0.94440 1.46791 1.23062 1.22862 1.12116 1.23286 0.90779 0.86607 1.01078 1.22708 0.98881 0.92358 0.86814 1.46303 1.33858 1.53930 1.01005 1.20129 1.23288 1.22560 0.77571 0.89715 1.25609 1.02314 1.00527 0.93183 1.70896 1.31385 1.40542 1.13522 0.83868 0.76484 0.75554 0.74495 1.21548 1.22087 1.21424 1.23316 0.93254 0.97715 0.89795 1.78220 1.00453 1.10404 1.18094 1.74982 1.21495 1.08118 1.08205 0.91708 0.91952 0.91927 0.92616 0.92034 0.92423 0.91318 0.91506 0.90823 0.91800 0.91322 0.90522 0.76337 0.89913 0.89865 0.79080 0.85793 0.92449 0.91583 0.92555 0.90855 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 7.21 37.16 0.27 -1.95 16 2 C -0.05 -0.62 0.94 -153.39 -0.14 -0.77 16 3 C -0.14 -1.55 8.16 37.16 0.30 -1.25 16 4 C -0.11 -1.21 5.90 -25.07 -0.15 -1.36 16 5 C -0.12 -1.30 6.91 -24.67 -0.17 -1.47 16 6 C -0.11 -1.14 6.05 -25.00 -0.15 -1.29 16 7 C -0.11 -1.25 2.95 -90.65 -0.27 -1.52 16 8 H 0.09 0.93 7.67 -51.93 -0.40 0.53 16 9 C 0.53 7.60 4.72 -10.99 -0.05 7.54 16 10 O -0.54 -9.28 15.37 5.55 0.09 -9.19 16 11 N -0.72 -10.15 4.70 -61.48 -0.29 -10.44 16 12 C 0.22 3.21 6.23 -5.20 -0.03 3.18 16 13 C -0.07 -1.11 6.61 -82.78 -0.55 -1.66 16 14 C 0.01 0.22 10.38 -17.04 -0.18 0.05 16 15 N -0.26 -4.42 3.56 -54.44 -0.19 -4.62 16 16 C 0.09 1.32 5.37 -67.68 -0.36 0.95 16 17 C 0.12 2.02 8.49 -8.50 -0.07 1.94 16 18 N -0.62 -13.07 3.42 -184.60 -0.63 -13.70 16 19 C -0.31 -7.89 11.09 -15.06 -0.17 -8.06 16 20 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 21 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 22 N -0.92 -26.57 13.70 55.49 0.76 -25.81 16 23 Si 1.06 23.72 24.72 -169.99 -4.20 19.52 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -5.84 5.12 56.52 0.29 -5.55 16 26 H -0.29 -5.97 6.72 56.52 0.38 -5.59 16 27 C 0.09 1.50 5.10 -8.37 -0.04 1.45 16 28 N -0.09 -1.65 13.16 60.35 0.79 -0.86 16 29 N -0.26 -4.64 12.41 33.29 0.41 -4.23 16 30 H 0.06 1.02 7.09 -51.93 -0.37 0.65 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.06 0.97 6.92 -51.93 -0.36 0.61 16 33 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.74 7.83 -51.93 -0.41 0.33 16 37 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 38 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.93 7.27 -51.93 -0.38 0.55 16 42 H 0.40 5.42 8.46 -40.82 -0.35 5.07 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.19 3.65 5.63 -52.49 -0.30 3.36 16 46 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 48 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.26 7.58 8.73 -40.82 -0.36 7.23 16 50 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 51 H 0.07 1.24 3.03 -51.93 -0.16 1.08 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -30.14 395.87 -7.47 -37.61 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -8.31 Total: 10.50 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.86 Total: -4.74 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.85 Total: -59.66 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.20 Total: 19.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.14 -7.47 -37.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094310951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.655 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds