Wall clock time and date at job start Wed Apr 1 2020 04:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.01545 * 2 1 4 4 C 1.54261 * 110.03258 * 238.55935 * 2 1 3 5 5 C 1.54893 * 104.19735 * 264.32196 * 4 2 1 6 6 C 1.55011 * 102.75504 * 322.04809 * 5 4 2 7 7 C 1.53879 * 110.03225 * 121.39156 * 2 1 3 8 8 H 1.08994 * 110.03218 * 238.61578 * 7 2 1 9 9 C 1.50693 * 110.03261 * 0.02562 * 7 2 1 10 10 O 1.21288 * 120.00189 * 94.87507 * 9 7 2 11 11 N 1.34778 * 120.00347 * 274.87158 * 9 7 2 12 12 C 1.46497 * 120.00329 * 179.97438 * 11 9 7 13 13 C 1.50697 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.35354 * 126.75331 * 95.00240 * 13 12 11 15 15 N 1.35313 * 106.17675 * 179.97438 * 14 13 12 16 16 C 1.46492 * 125.86825 * 179.97438 * 15 14 13 17 17 C 1.53499 * 114.21042 * 275.00732 * 16 15 14 18 18 N 1.47067 * 87.98602 * 87.51820 * 17 16 15 19 19 C 1.36938 * 136.05515 * 207.09111 * 18 17 16 20 20 H 1.08001 * 120.00125 * 355.00701 * 19 18 17 21 21 C 1.38814 * 119.99978 * 175.01237 * 19 18 17 22 22 N 1.31615 * 119.99971 * 184.65054 * 21 19 18 23 23 Si 1.86801 * 119.99893 * 4.64671 * 21 19 18 24 24 H 1.48498 * 109.47195 * 174.38575 * 23 21 19 25 25 H 1.48498 * 109.47117 * 294.39183 * 23 21 19 26 26 H 1.48509 * 109.47090 * 54.38920 * 23 21 19 27 27 C 1.47067 * 87.88508 * 27.34357 * 18 17 16 28 28 N 1.28710 * 108.26098 * 0.26674 * 15 14 13 29 29 N 1.28639 * 110.18289 * 359.55423 * 28 15 14 30 30 H 1.09000 * 109.47182 * 303.53598 * 1 2 3 31 31 H 1.08999 * 109.47506 * 63.54408 * 1 2 3 32 32 H 1.09005 * 109.46809 * 183.54463 * 1 2 3 33 33 H 1.08998 * 109.47269 * 181.38748 * 3 2 1 34 34 H 1.08999 * 109.47198 * 301.39432 * 3 2 1 35 35 H 1.09008 * 109.46923 * 61.39148 * 3 2 1 36 36 H 1.09005 * 110.48977 * 22.99979 * 4 2 1 37 37 H 1.09004 * 110.48875 * 145.64483 * 4 2 1 38 38 H 1.09007 * 110.75457 * 80.37581 * 5 4 2 39 39 H 1.09003 * 110.75716 * 203.55774 * 5 4 2 40 40 H 1.08993 * 110.50185 * 279.29517 * 6 5 4 41 41 H 1.09002 * 110.52082 * 156.61318 * 6 5 4 42 42 H 0.97005 * 119.99579 * 0.02562 * 11 9 7 43 43 H 1.08998 * 109.47110 * 60.00073 * 12 11 9 44 44 H 1.08996 * 109.47401 * 300.00370 * 12 11 9 45 45 H 1.07997 * 126.90650 * 0.02562 * 14 13 12 46 46 H 1.08997 * 113.41807 * 141.80287 * 16 15 14 47 47 H 1.09007 * 113.46461 * 332.73938 * 17 16 15 48 48 H 1.08997 * 113.52457 * 202.30920 * 17 16 15 49 49 H 0.97001 * 120.00106 * 4.99830 * 22 21 19 50 50 H 1.09002 * 113.46005 * 87.43830 * 27 18 17 51 51 H 1.09000 * 113.46432 * 217.87604 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0584 -0.7560 -1.2365 5 6 2.3282 -2.1905 -0.7182 6 6 2.8883 -1.9403 0.7054 7 6 2.0571 -0.7530 1.2341 8 1 2.6860 -0.0944 1.8329 9 6 0.9038 -1.2588 2.0617 10 8 0.4976 -2.3912 1.9079 11 7 0.3238 -0.4529 2.9730 12 6 -0.7978 -0.9444 3.7772 13 6 -1.2608 0.1436 4.7115 14 6 -2.2686 1.0212 4.4965 15 7 -2.3253 1.8070 5.5966 16 6 -3.2669 2.9072 5.8178 17 6 -2.8221 4.2472 5.2155 18 7 -3.4708 3.8390 3.9603 19 6 -3.3036 4.1141 2.6292 20 1 -2.5793 4.8519 2.3171 21 6 -4.0652 3.4447 1.6812 22 7 -3.8417 3.6413 0.3992 23 14 -5.4074 2.2647 2.2250 24 1 -6.1583 1.7872 1.0362 25 1 -4.7947 1.1055 2.9222 26 1 -6.3363 2.9636 3.1493 27 6 -4.3819 3.0105 4.7641 28 7 -1.4058 1.4257 6.4125 29 7 -0.7569 0.4318 5.9167 30 1 -0.3633 0.5677 0.8566 31 1 -0.3634 0.4578 -0.9200 32 1 -0.3633 -1.0258 0.0635 33 1 3.1433 1.4274 -0.0249 34 1 1.6751 1.9622 -0.8772 35 1 1.7157 1.9474 0.9023 36 1 1.3061 -0.7705 -2.0252 37 1 2.9811 -0.3007 -1.5965 38 1 1.4032 -2.7655 -0.6740 39 1 3.0653 -2.6948 -1.3431 40 1 3.9446 -1.6758 0.6590 41 1 2.7412 -2.8188 1.3337 42 1 0.6485 0.4529 3.0959 43 1 -0.4772 -1.8098 4.3572 44 1 -1.6181 -1.2315 3.1196 45 1 -2.9008 1.0814 3.6230 46 1 -3.6198 2.9751 6.8469 47 1 -1.7399 4.3477 5.1321 48 1 -3.2907 5.1121 5.6849 49 1 -3.0987 4.1970 0.1160 50 1 -5.2623 3.5489 5.1151 51 1 -4.6286 2.0574 4.2962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094310951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:17 Heat of formation + Delta-G solvation = 96.845032 kcal Electronic energy + Delta-G solvation = -32251.235970 eV Core-core repulsion = 28188.881457 eV Total energy + Delta-G solvation = -4062.354513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -44.44285 -41.67886 -40.41089 -38.77247 -36.32948 -34.99433 -33.93983 -33.13425 -32.51993 -30.46568 -30.05176 -28.45149 -27.75532 -27.14059 -25.71600 -25.47191 -23.40085 -22.84215 -22.28790 -21.27324 -21.11097 -19.92703 -19.64411 -18.56581 -18.12345 -17.61996 -17.19041 -16.72824 -16.44641 -16.06909 -15.94330 -15.82565 -15.70926 -15.57736 -15.10020 -14.67383 -14.58730 -14.41023 -14.15094 -14.00687 -13.73171 -13.57340 -13.44592 -13.06439 -13.04701 -12.76001 -12.64283 -12.48290 -12.38967 -12.27218 -12.07657 -12.00629 -11.81704 -11.60732 -11.45196 -11.38448 -11.37752 -11.32687 -11.09064 -10.95510 -10.84518 -10.29417 -10.13230 -9.31034 -8.63025 -5.51109 0.47437 1.16408 1.23862 1.31302 1.42533 1.61862 1.62935 2.37605 2.50039 2.73237 2.96764 3.17993 3.21088 3.46231 3.54514 3.64240 3.70777 3.85175 4.01223 4.03702 4.10580 4.27260 4.30478 4.32770 4.37793 4.39482 4.43458 4.51483 4.54362 4.58945 4.59063 4.68702 4.75864 4.76716 4.83387 4.84830 4.95653 4.96298 5.01066 5.06492 5.08191 5.12705 5.19971 5.29697 5.32095 5.34501 5.41707 5.50524 5.62463 5.91863 6.46907 6.65180 7.19445 7.27134 7.36717 8.14492 8.89659 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.003875 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.445490 B = 7224.571131 C = 8602.901979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.138 4.138 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.102 4.102 7 C -0.105 4.105 8 H 0.111 0.889 9 C 0.529 3.471 10 O -0.574 6.574 11 N -0.720 5.720 12 C 0.219 3.781 13 C -0.054 4.054 14 C -0.004 4.004 15 N -0.256 5.256 16 C 0.100 3.900 17 C 0.121 3.879 18 N -0.654 5.654 19 C -0.286 4.286 20 H 0.047 0.953 21 C -0.070 4.070 22 N -0.965 5.965 23 Si 1.093 2.907 24 H -0.312 1.312 25 H -0.262 1.262 26 H -0.255 1.255 27 C 0.082 3.918 28 N -0.093 5.093 29 N -0.273 5.273 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.405 0.595 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.178 0.822 46 H 0.175 0.825 47 H 0.042 0.958 48 H 0.103 0.897 49 H 0.247 0.753 50 H 0.108 0.892 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.344 -6.375 5.373 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.140 4.140 7 C -0.126 4.126 8 H 0.129 0.871 9 C 0.317 3.683 10 O -0.454 6.454 11 N -0.371 5.371 12 C 0.093 3.907 13 C -0.192 4.192 14 C -0.157 4.157 15 N -0.048 5.048 16 C -0.002 4.002 17 C -0.005 4.005 18 N -0.384 5.384 19 C -0.413 4.413 20 H 0.065 0.935 21 C -0.263 4.263 22 N -0.610 5.610 23 Si 0.920 3.080 24 H -0.240 1.240 25 H -0.189 1.189 26 H -0.180 1.180 27 C -0.043 4.043 28 N -0.072 5.072 29 N -0.141 5.141 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.240 0.760 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.195 0.805 46 H 0.192 0.808 47 H 0.060 0.940 48 H 0.120 0.880 49 H 0.056 0.944 50 H 0.125 0.875 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.520 -7.800 5.904 12.972 hybrid contribution 0.386 1.930 -0.883 2.157 sum 8.906 -5.870 5.022 11.789 Atomic orbital electron populations 1.22061 0.95874 1.00892 1.01771 1.21059 0.94088 0.95896 0.93993 1.21933 1.01958 0.93860 1.01786 1.22509 1.01511 0.95086 0.95755 1.22468 1.00711 0.96606 0.95989 1.22279 0.99256 0.95912 0.96528 1.22186 0.94603 0.99604 0.96200 0.87104 1.20901 0.84041 0.84674 0.78676 1.90654 1.65587 1.20528 1.68592 1.46111 1.34625 1.17316 1.39079 1.19199 0.89485 0.91950 0.90055 1.21805 0.98984 1.02558 0.95853 1.23570 1.03184 0.94374 0.94554 1.46999 1.23140 1.23005 1.11627 1.23430 0.89069 0.84745 1.02949 1.22959 0.98114 0.94488 0.84968 1.46245 1.36322 1.55165 1.00619 1.19840 1.21041 1.20047 0.80381 0.93488 1.26774 1.04625 1.02268 0.92676 1.71008 1.32080 1.42565 1.15349 0.83566 0.74783 0.75271 0.74345 1.24017 1.18946 1.17960 1.23570 0.94455 0.96859 0.89446 1.78174 1.00510 1.10387 1.18126 1.74975 1.21944 1.08527 1.08620 0.93643 0.92751 0.93511 0.90023 0.92640 0.93471 0.91960 0.89181 0.93382 0.89616 0.88459 0.91995 0.75970 0.89482 0.90239 0.80480 0.80783 0.93957 0.87974 0.94386 0.87484 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 7.21 71.98 0.52 -3.98 16 2 C -0.05 -1.15 0.94 -51.46 -0.05 -1.20 16 3 C -0.14 -2.91 8.16 71.98 0.59 -2.32 16 4 C -0.11 -2.21 5.90 31.67 0.19 -2.02 16 5 C -0.12 -2.43 6.91 31.93 0.22 -2.20 16 6 C -0.10 -2.03 6.05 31.71 0.19 -1.84 16 7 C -0.10 -2.35 2.95 -10.82 -0.03 -2.38 16 8 H 0.11 2.04 7.67 -2.39 -0.02 2.02 16 9 C 0.53 15.23 4.72 87.65 0.41 15.64 16 10 O -0.57 -20.01 15.37 -3.05 -0.05 -20.06 16 11 N -0.72 -20.40 4.70 -466.81 -2.19 -22.59 16 12 C 0.22 6.52 6.23 85.63 0.53 7.05 16 13 C -0.05 -1.74 6.61 41.60 0.28 -1.47 16 14 C 0.00 -0.12 10.38 83.49 0.87 0.74 16 15 N -0.26 -8.17 3.56 -326.16 -1.16 -9.33 16 16 C 0.10 2.66 5.37 45.55 0.24 2.90 16 17 C 0.12 3.70 8.49 83.18 0.71 4.40 16 18 N -0.65 -26.40 3.42 -737.96 -2.52 -28.92 16 19 C -0.29 -14.82 11.09 84.03 0.93 -13.89 16 20 H 0.05 2.73 8.06 -2.91 -0.02 2.71 16 21 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 22 N -0.97 -58.31 13.70 21.65 0.30 -58.01 16 23 Si 1.09 47.47 24.72 68.60 1.70 49.16 16 24 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 25 H -0.26 -9.98 5.12 99.48 0.51 -9.47 16 26 H -0.25 -9.61 6.72 99.48 0.67 -8.94 16 27 C 0.08 2.56 5.10 83.27 0.42 2.98 16 28 N -0.09 -3.10 13.16 37.02 0.49 -2.61 16 29 N -0.27 -9.35 12.41 -48.60 -0.60 -9.95 16 30 H 0.04 1.52 7.09 -2.39 -0.02 1.50 16 31 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 32 H 0.05 1.53 6.92 -2.38 -0.02 1.52 16 33 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 1.32 7.83 -2.38 -0.02 1.30 16 37 H 0.09 1.41 7.84 -2.39 -0.02 1.39 16 38 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.44 7.27 -2.39 -0.02 1.42 16 42 H 0.41 10.96 8.46 -92.70 -0.78 10.18 16 43 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.18 6.71 5.63 -2.91 -0.02 6.69 16 46 H 0.18 3.00 8.14 -2.39 -0.02 2.98 16 47 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.25 15.13 8.73 -92.71 -0.81 14.32 16 50 H 0.11 2.76 8.07 -2.39 -0.02 2.74 16 51 H 0.06 1.97 3.03 -2.39 -0.01 1.97 16 Total: -1.00 -69.26 395.87 2.33 -66.93 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.12 Total: 36.32 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 6.49 Total: -0.93 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -5.70 Total: -131.42 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.05 Total: -20.06 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.70 Total: 49.16 kcal Total: -69.26 2.33 -66.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094310951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.775 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds