Wall clock time and date at job start Wed Apr 1 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47178 * 2 1 4 4 C 1.50704 * 112.84757 * 302.93585 * 3 2 1 5 5 O 1.21279 * 119.99761 * 123.31878 * 4 3 2 6 6 N 1.34767 * 119.99850 * 303.30765 * 4 3 2 7 7 C 1.47425 * 125.65257 * 355.26536 * 6 4 3 8 8 C 1.54910 * 104.92833 * 204.15345 * 7 6 4 9 9 C 1.55151 * 101.58263 * 322.92872 * 8 7 6 10 10 H 1.09001 * 110.72488 * 277.14298 * 9 8 7 11 11 N 1.46494 * 110.72240 * 153.86631 * 9 8 7 12 12 C 1.35313 * 125.86975 * 326.45648 * 11 9 8 13 13 C 1.35355 * 106.17682 * 179.97438 * 12 11 9 14 14 C 1.50698 * 126.74875 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47608 * 95.00207 * 14 13 12 16 16 C 1.36938 * 120.00344 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99592 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00034 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99757 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46888 * 90.00507 * 20 18 16 22 22 H 1.48504 * 109.47366 * 210.00353 * 20 18 16 23 23 H 1.48503 * 109.47344 * 330.00608 * 20 18 16 24 24 N 1.33769 * 106.49508 * 359.97438 * 13 12 11 25 25 N 1.28632 * 108.88543 * 359.73894 * 24 13 12 26 26 C 1.47289 * 125.79078 * 175.25765 * 6 4 3 27 27 C 1.53785 * 113.61362 * 74.13121 * 3 2 1 28 28 C 1.53952 * 87.01926 * 89.22894 * 27 3 2 29 29 C 1.53781 * 87.11304 * 25.36402 * 28 27 3 30 30 H 1.08998 * 109.47103 * 175.22601 * 1 2 3 31 31 H 1.08995 * 109.47433 * 295.22925 * 1 2 3 32 32 H 1.09006 * 109.46992 * 55.22613 * 1 2 3 33 33 H 1.08991 * 109.46857 * 239.99624 * 2 1 3 34 34 H 1.09000 * 109.46467 * 119.99440 * 2 1 3 35 35 H 1.08994 * 110.37314 * 85.25476 * 7 6 4 36 36 H 1.09002 * 110.36489 * 323.04238 * 7 6 4 37 37 H 1.08993 * 111.00770 * 81.00507 * 8 7 6 38 38 H 1.09007 * 111.00305 * 204.86055 * 8 7 6 39 39 H 1.07997 * 126.91253 * 359.97438 * 12 11 9 40 40 H 1.09007 * 109.46761 * 215.00178 * 14 13 12 41 41 H 1.09001 * 109.47404 * 334.99655 * 14 13 12 42 42 H 0.97007 * 119.99615 * 359.97438 * 15 14 13 43 43 H 0.97002 * 119.99663 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.85890 * 59.50564 * 26 6 4 45 45 H 1.09003 * 109.87721 * 298.36193 * 26 6 4 46 46 H 1.09005 * 113.61401 * 203.74759 * 27 3 2 47 47 H 1.08997 * 113.61366 * 334.64867 * 27 3 2 48 48 H 1.08992 * 113.53695 * 270.80864 * 28 27 3 49 49 H 1.09003 * 113.74102 * 139.93868 * 28 27 3 50 50 H 1.09001 * 113.61512 * 220.09497 * 29 28 27 51 51 H 1.08998 * 113.62151 * 89.18596 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5232 2.2459 -1.1656 5 8 0.9128 3.2753 -0.9694 6 7 1.7395 1.8204 -2.4259 7 6 2.5456 0.6475 -2.8105 8 6 2.9966 0.9327 -4.2648 9 6 1.7414 1.6334 -4.8485 10 1 1.0044 0.8982 -5.1715 11 7 2.1102 2.5203 -5.9547 12 6 3.2607 3.2253 -6.0559 13 6 3.1861 3.9027 -7.2254 14 6 4.2245 4.8341 -7.7956 15 7 5.0827 4.0975 -8.7269 16 6 6.1045 4.7417 -9.3719 17 1 6.2780 5.7927 -9.1938 18 6 6.9180 4.0436 -10.2539 19 7 6.7067 2.7626 -10.4705 20 14 8.3114 4.9224 -11.1343 21 1 9.5472 4.8355 -10.3153 22 1 8.5457 4.2818 -12.4534 23 1 7.9493 6.3487 -11.3340 24 7 2.0095 3.5826 -7.7754 25 7 1.3985 2.7573 -7.0006 26 6 1.2112 2.4477 -3.6494 27 6 1.8821 2.1517 1.3554 28 6 3.2760 1.6047 1.7132 29 6 3.5601 1.5585 0.2025 30 1 -0.3633 -1.0241 -0.0855 31 1 -0.3634 0.4380 0.9296 32 1 -0.3633 0.5862 -0.8442 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.9403 -0.2581 -2.7717 36 1 3.4123 0.5519 -2.1564 37 1 3.8595 1.5984 -4.2828 38 1 3.2092 0.0054 -4.7969 39 1 4.0746 3.2438 -5.3464 40 1 3.7303 5.6493 -8.3243 41 1 4.8313 5.2409 -6.9866 42 1 4.9270 3.1534 -8.8865 43 1 7.2749 2.2749 -11.0871 44 1 1.5602 3.4780 -3.7176 45 1 0.1215 2.4233 -3.6376 46 1 1.8462 3.2384 1.2780 47 1 1.0807 1.7434 1.9710 48 1 3.2504 0.6216 2.1829 49 1 3.9011 2.3159 2.2533 50 1 4.1112 0.6719 -0.1112 51 1 3.9837 2.4826 -0.1907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098702971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:10 Heat of formation + Delta-G solvation = 104.495799 kcal Electronic energy + Delta-G solvation = -30827.574758 eV Core-core repulsion = 26765.552007 eV Total energy + Delta-G solvation = -4062.022751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.07392 -41.38057 -39.10440 -37.56002 -35.08712 -34.10256 -32.92394 -31.93644 -30.92464 -29.98806 -29.46442 -26.95976 -26.13723 -25.86577 -24.57573 -23.31810 -23.02401 -22.69750 -20.89612 -20.87544 -20.40868 -18.95260 -17.72453 -17.29562 -17.11361 -16.42975 -16.27322 -15.99272 -15.74224 -14.87848 -14.65099 -14.57845 -14.45094 -14.35944 -14.02493 -13.66080 -13.37592 -13.20523 -13.12641 -13.01079 -12.81528 -12.71109 -12.54832 -12.27175 -12.20304 -12.03680 -11.96855 -11.73242 -11.52816 -11.36759 -11.24892 -10.90398 -10.85230 -10.80476 -10.71301 -10.46893 -10.09980 -10.03813 -9.86885 -9.72211 -9.17394 -8.89329 -8.85588 -6.91680 -5.73984 -3.03496 1.74282 2.05152 2.22512 2.63778 2.89024 3.45617 3.50999 3.53131 3.65923 3.75717 3.86134 3.96286 4.14077 4.26530 4.28054 4.38250 4.40041 4.56635 4.62983 4.72113 4.74562 4.83475 4.90108 4.93473 5.08854 5.17680 5.18245 5.23293 5.27983 5.30297 5.31715 5.36062 5.36562 5.41748 5.48494 5.50255 5.59057 5.62461 5.65793 5.69117 5.77839 5.83249 5.95202 6.17278 6.38742 6.65102 6.72730 6.78171 6.97667 7.71538 7.73334 8.43351 8.80883 9.55201 10.10643 10.46817 11.48814 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.002093 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.318078 B =13375.559715 C =14030.548925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C -0.103 4.103 4 C 0.550 3.450 5 O -0.532 6.532 6 N -0.617 5.617 7 C 0.101 3.899 8 C -0.145 4.145 9 C 0.138 3.862 10 H 0.130 0.870 11 N -0.294 5.294 12 C -0.042 4.042 13 C -0.002 4.002 14 C 0.232 3.768 15 N -0.725 5.725 16 C -0.239 4.239 17 H 0.073 0.927 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 N -0.250 5.250 25 N -0.093 5.093 26 C 0.101 3.899 27 C -0.113 4.113 28 C -0.140 4.140 29 C -0.125 4.125 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.186 0.814 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.033 -10.242 28.131 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C -0.106 4.106 4 C 0.339 3.661 5 O -0.408 6.408 6 N -0.352 5.352 7 C -0.023 4.023 8 C -0.183 4.183 9 C 0.034 3.966 10 H 0.148 0.852 11 N -0.088 5.088 12 C -0.192 4.192 13 C -0.139 4.139 14 C 0.103 3.897 15 N -0.370 5.370 16 C -0.370 4.370 17 H 0.091 0.909 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 N -0.118 5.118 25 N -0.071 5.071 26 C -0.024 4.024 27 C -0.151 4.151 28 C -0.177 4.177 29 C -0.163 4.163 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.203 0.797 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.622 -9.805 27.524 31.445 hybrid contribution 1.695 0.158 -0.101 1.706 sum -9.926 -9.647 27.423 30.718 Atomic orbital electron populations 1.21775 0.95056 1.01938 1.02390 1.21434 0.96590 0.92572 1.03295 1.22214 0.97881 0.96621 0.93864 1.20159 0.78885 0.85081 0.81955 1.90726 1.41270 1.24406 1.84363 1.48420 1.51992 1.29739 1.05072 1.22495 0.95765 0.88948 0.95053 1.23326 0.97003 1.02983 0.95035 1.22480 0.99442 0.90942 0.83708 0.85189 1.47092 1.13577 1.31971 1.16159 1.23261 0.92926 1.00270 1.02712 1.22467 0.95728 1.02471 0.93270 1.18957 0.87135 0.90966 0.92647 1.42301 1.34464 1.10212 1.50052 1.19233 1.05353 0.93995 1.18400 0.90885 1.24757 0.99959 0.95923 1.00330 1.69684 1.41184 1.07374 1.39852 0.86154 0.82173 0.78637 0.79003 1.21749 1.21792 1.20657 1.75109 1.06174 1.08834 1.21681 1.78292 1.20012 1.15279 0.93513 1.22247 0.99899 0.97723 0.82485 1.22898 0.97505 1.01246 0.93403 1.22855 0.97225 1.01796 0.95834 1.22975 0.93039 1.03004 0.97290 0.92117 0.92266 0.92813 0.90761 0.90427 0.90144 0.89110 0.88565 0.87675 0.79676 0.94250 0.94482 0.78111 0.93533 0.90125 0.89687 0.88878 0.90760 0.89763 0.90816 0.90383 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.63 37.16 0.36 -0.50 16 2 C -0.10 -0.47 5.06 -26.73 -0.14 -0.60 16 3 C -0.10 -0.67 0.35 -154.84 -0.05 -0.72 16 4 C 0.55 5.33 5.63 -10.99 -0.06 5.27 16 5 O -0.53 -7.43 16.32 5.56 0.09 -7.34 16 6 N -0.62 -4.92 3.33 -170.30 -0.57 -5.49 16 7 C 0.10 0.49 5.18 -2.53 -0.01 0.48 16 8 C -0.14 -0.91 6.48 -24.59 -0.16 -1.07 16 9 C 0.14 1.22 3.98 -66.10 -0.26 0.95 16 10 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 11 N -0.29 -4.03 3.28 -52.98 -0.17 -4.20 16 12 C -0.04 -0.62 10.59 -17.04 -0.18 -0.80 16 13 C 0.00 -0.04 6.62 -82.78 -0.55 -0.58 16 14 C 0.23 4.92 6.82 -5.20 -0.04 4.88 16 15 N -0.73 -18.99 5.59 -61.09 -0.34 -19.33 16 16 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 N -0.25 -5.13 12.41 33.29 0.41 -4.71 16 25 N -0.09 -1.63 13.16 60.35 0.79 -0.83 16 26 C 0.10 0.94 6.64 -2.91 -0.02 0.92 16 27 C -0.11 -0.76 6.84 -25.83 -0.18 -0.94 16 28 C -0.14 -0.68 7.74 -25.83 -0.20 -0.88 16 29 C -0.13 -0.67 6.18 -25.92 -0.16 -0.83 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.34 7.44 -51.93 -0.39 -0.04 16 32 H 0.05 0.39 7.15 -51.93 -0.37 0.02 16 33 H 0.07 0.26 5.38 -51.93 -0.28 -0.02 16 34 H 0.08 0.27 7.31 -51.93 -0.38 -0.11 16 35 H 0.08 0.26 7.10 -51.93 -0.37 -0.11 16 36 H 0.09 0.34 6.28 -51.93 -0.33 0.01 16 37 H 0.10 0.68 6.39 -51.93 -0.33 0.35 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.19 2.20 7.01 -52.49 -0.37 1.83 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.39 10.84 7.66 -40.82 -0.31 10.53 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.81 7.55 -51.93 -0.39 0.41 16 47 H 0.07 0.45 7.39 -51.93 -0.38 0.07 16 48 H 0.08 0.31 7.60 -51.93 -0.39 -0.09 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.30 7.59 -51.93 -0.39 -0.10 16 51 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -36.33 402.39 -7.95 -44.27 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.03 Total: 3.79 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.89 Total: -1.82 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: 0.85 Total: -62.47 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.09 Total: -7.34 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.33 -7.95 -44.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098702971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.769 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds