Wall clock time and date at job start Wed Apr 1 2020 06:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47178 * 2 1 4 4 C 1.50704 * 112.84757 * 302.93585 * 3 2 1 5 5 O 1.21279 * 119.99761 * 123.31878 * 4 3 2 6 6 N 1.34767 * 119.99850 * 303.30765 * 4 3 2 7 7 C 1.47425 * 125.65257 * 355.26536 * 6 4 3 8 8 C 1.54910 * 104.92833 * 204.15345 * 7 6 4 9 9 C 1.55151 * 101.58263 * 322.92872 * 8 7 6 10 10 H 1.09001 * 110.72488 * 277.14298 * 9 8 7 11 11 N 1.46494 * 110.72240 * 153.86631 * 9 8 7 12 12 C 1.35313 * 125.86975 * 326.45648 * 11 9 8 13 13 C 1.35355 * 106.17682 * 179.97438 * 12 11 9 14 14 C 1.50698 * 126.74875 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47608 * 95.00207 * 14 13 12 16 16 C 1.36938 * 120.00344 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99592 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00034 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99757 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46888 * 90.00507 * 20 18 16 22 22 H 1.48504 * 109.47366 * 210.00353 * 20 18 16 23 23 H 1.48503 * 109.47344 * 330.00608 * 20 18 16 24 24 N 1.33769 * 106.49508 * 359.97438 * 13 12 11 25 25 N 1.28632 * 108.88543 * 359.73894 * 24 13 12 26 26 C 1.47289 * 125.79078 * 175.25765 * 6 4 3 27 27 C 1.53785 * 113.61362 * 74.13121 * 3 2 1 28 28 C 1.53952 * 87.01926 * 89.22894 * 27 3 2 29 29 C 1.53781 * 87.11304 * 25.36402 * 28 27 3 30 30 H 1.08998 * 109.47103 * 175.22601 * 1 2 3 31 31 H 1.08995 * 109.47433 * 295.22925 * 1 2 3 32 32 H 1.09006 * 109.46992 * 55.22613 * 1 2 3 33 33 H 1.08991 * 109.46857 * 239.99624 * 2 1 3 34 34 H 1.09000 * 109.46467 * 119.99440 * 2 1 3 35 35 H 1.08994 * 110.37314 * 85.25476 * 7 6 4 36 36 H 1.09002 * 110.36489 * 323.04238 * 7 6 4 37 37 H 1.08993 * 111.00770 * 81.00507 * 8 7 6 38 38 H 1.09007 * 111.00305 * 204.86055 * 8 7 6 39 39 H 1.07997 * 126.91253 * 359.97438 * 12 11 9 40 40 H 1.09007 * 109.46761 * 215.00178 * 14 13 12 41 41 H 1.09001 * 109.47404 * 334.99655 * 14 13 12 42 42 H 0.97007 * 119.99615 * 359.97438 * 15 14 13 43 43 H 0.97002 * 119.99663 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.85890 * 59.50564 * 26 6 4 45 45 H 1.09003 * 109.87721 * 298.36193 * 26 6 4 46 46 H 1.09005 * 113.61401 * 203.74759 * 27 3 2 47 47 H 1.08997 * 113.61366 * 334.64867 * 27 3 2 48 48 H 1.08992 * 113.53695 * 270.80864 * 28 27 3 49 49 H 1.09003 * 113.74102 * 139.93868 * 28 27 3 50 50 H 1.09001 * 113.61512 * 220.09497 * 29 28 27 51 51 H 1.08998 * 113.62151 * 89.18596 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5232 2.2459 -1.1656 5 8 0.9128 3.2753 -0.9694 6 7 1.7395 1.8204 -2.4259 7 6 2.5456 0.6475 -2.8105 8 6 2.9966 0.9327 -4.2648 9 6 1.7414 1.6334 -4.8485 10 1 1.0044 0.8982 -5.1715 11 7 2.1102 2.5203 -5.9547 12 6 3.2607 3.2253 -6.0559 13 6 3.1861 3.9027 -7.2254 14 6 4.2245 4.8341 -7.7956 15 7 5.0827 4.0975 -8.7269 16 6 6.1045 4.7417 -9.3719 17 1 6.2780 5.7927 -9.1938 18 6 6.9180 4.0436 -10.2539 19 7 6.7067 2.7626 -10.4705 20 14 8.3114 4.9224 -11.1343 21 1 9.5472 4.8355 -10.3153 22 1 8.5457 4.2818 -12.4534 23 1 7.9493 6.3487 -11.3340 24 7 2.0095 3.5826 -7.7754 25 7 1.3985 2.7573 -7.0006 26 6 1.2112 2.4477 -3.6494 27 6 1.8821 2.1517 1.3554 28 6 3.2760 1.6047 1.7132 29 6 3.5601 1.5585 0.2025 30 1 -0.3633 -1.0241 -0.0855 31 1 -0.3634 0.4380 0.9296 32 1 -0.3633 0.5862 -0.8442 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.9403 -0.2581 -2.7717 36 1 3.4123 0.5519 -2.1564 37 1 3.8595 1.5984 -4.2828 38 1 3.2092 0.0054 -4.7969 39 1 4.0746 3.2438 -5.3464 40 1 3.7303 5.6493 -8.3243 41 1 4.8313 5.2409 -6.9866 42 1 4.9270 3.1534 -8.8865 43 1 7.2749 2.2749 -11.0871 44 1 1.5602 3.4780 -3.7176 45 1 0.1215 2.4233 -3.6376 46 1 1.8462 3.2384 1.2780 47 1 1.0807 1.7434 1.9710 48 1 3.2504 0.6216 2.1829 49 1 3.9011 2.3159 2.2533 50 1 4.1112 0.6719 -0.1112 51 1 3.9837 2.4826 -0.1907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098702971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:09 Heat of formation + Delta-G solvation = 79.389176 kcal Electronic energy + Delta-G solvation = -30828.663463 eV Core-core repulsion = 26765.552007 eV Total energy + Delta-G solvation = -4063.111456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.35377 -41.99507 -39.72834 -38.33737 -36.84074 -35.29652 -33.75309 -33.33046 -31.82112 -31.61115 -30.23271 -27.77097 -27.44371 -26.60283 -25.26742 -24.83631 -24.08187 -23.41447 -22.25436 -21.73781 -21.15488 -19.56485 -19.33678 -18.46044 -17.88824 -17.37767 -17.11872 -16.88380 -16.54591 -16.33349 -16.00454 -15.53143 -15.24465 -15.14135 -15.01785 -14.89204 -14.59601 -14.29280 -14.00812 -13.90077 -13.61842 -13.49067 -13.32322 -13.21207 -13.12253 -12.90680 -12.76887 -12.67119 -12.59810 -12.42573 -12.19222 -12.09668 -12.08844 -11.90732 -11.83943 -11.77175 -11.28233 -11.16631 -11.09681 -10.95702 -10.66057 -10.26746 -9.85873 -9.02249 -7.93148 -5.23583 0.51600 1.12918 1.42079 1.50515 1.51187 1.52730 1.61522 1.89491 2.59638 2.99638 3.09194 3.33985 3.37648 3.42340 3.46367 3.64842 3.71714 3.79747 3.83667 3.89582 3.93383 4.06144 4.18691 4.23151 4.33007 4.35013 4.40731 4.47888 4.49985 4.55278 4.61025 4.76596 4.79120 4.83081 4.83500 4.85608 4.90887 4.95963 5.05774 5.08191 5.09157 5.11695 5.15903 5.17279 5.27632 5.37263 5.51219 5.51597 5.61771 6.26610 6.32858 7.01905 7.33652 7.45761 8.03839 8.30681 9.30687 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.002093 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.318078 B =13375.559715 C =14030.548925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 C -0.099 4.099 4 C 0.544 3.456 5 O -0.588 6.588 6 N -0.613 5.613 7 C 0.101 3.899 8 C -0.138 4.138 9 C 0.132 3.868 10 H 0.150 0.850 11 N -0.277 5.277 12 C -0.017 4.017 13 C -0.034 4.034 14 C 0.235 3.765 15 N -0.737 5.737 16 C -0.244 4.244 17 H 0.083 0.917 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 0.979 3.021 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.270 1.270 24 N -0.295 5.295 25 N -0.107 5.107 26 C 0.105 3.895 27 C -0.124 4.124 28 C -0.129 4.129 29 C -0.122 4.122 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.220 0.780 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.072 0.928 50 H 0.105 0.895 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 -12.380 30.076 33.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.134 4.134 3 C -0.102 4.102 4 C 0.335 3.665 5 O -0.468 6.468 6 N -0.346 5.346 7 C -0.021 4.021 8 C -0.177 4.177 9 C 0.030 3.970 10 H 0.168 0.832 11 N -0.070 5.070 12 C -0.168 4.168 13 C -0.172 4.172 14 C 0.107 3.893 15 N -0.380 5.380 16 C -0.376 4.376 17 H 0.101 0.899 18 C -0.268 4.268 19 N -0.622 5.622 20 Si 0.807 3.193 21 H -0.208 1.208 22 H -0.225 1.225 23 H -0.194 1.194 24 N -0.162 5.162 25 N -0.085 5.085 26 C -0.020 4.020 27 C -0.162 4.162 28 C -0.166 4.166 29 C -0.159 4.159 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.143 0.857 39 H 0.237 0.763 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.203 0.797 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.125 0.875 49 H 0.091 0.909 50 H 0.123 0.877 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.159 -11.950 29.494 33.406 hybrid contribution 1.108 0.841 -0.579 1.507 sum -9.051 -11.109 28.915 32.271 Atomic orbital electron populations 1.21778 0.96142 1.02308 1.00980 1.21497 0.95544 0.91110 1.05251 1.22325 0.98792 0.97255 0.91791 1.20865 0.78002 0.84634 0.83009 1.90698 1.43885 1.26953 1.85218 1.48481 1.51697 1.30329 1.04142 1.22792 0.96587 0.88408 0.94301 1.23407 0.95210 1.03338 0.95723 1.22951 1.01745 0.90347 0.81960 0.83231 1.47427 1.12517 1.31151 1.15955 1.23594 0.93524 0.98220 1.01495 1.22272 0.95591 1.04217 0.95152 1.18954 0.87275 0.90792 0.92230 1.42479 1.34824 1.09799 1.50906 1.19676 1.05429 0.94502 1.17962 0.89939 1.25627 1.02851 0.96716 1.01645 1.69850 1.42486 1.08963 1.40876 0.85067 0.79137 0.77825 0.77259 1.20844 1.22463 1.19446 1.75037 1.07249 1.10419 1.23533 1.78176 1.20433 1.15307 0.94570 1.22066 0.99646 0.96683 0.83605 1.22910 0.99300 0.99702 0.94328 1.22857 0.95288 1.02706 0.95732 1.22979 0.91988 1.03440 0.97505 0.90582 0.93083 0.95114 0.88864 0.88289 0.87342 0.86931 0.88958 0.85673 0.76341 0.95416 0.92151 0.79686 0.94013 0.92735 0.90255 0.91839 0.90406 0.87520 0.90900 0.87661 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.63 71.98 0.69 -0.74 16 2 C -0.10 -0.55 5.06 30.60 0.15 -0.40 16 3 C -0.10 -1.10 0.35 -52.40 -0.02 -1.12 16 4 C 0.54 10.31 5.63 87.66 0.49 10.81 16 5 O -0.59 -17.34 16.32 -3.03 -0.05 -17.39 16 6 N -0.61 -8.81 3.33 -811.11 -2.70 -11.51 16 7 C 0.10 0.59 5.18 86.86 0.45 1.04 16 8 C -0.14 -1.24 6.48 31.98 0.21 -1.04 16 9 C 0.13 2.06 3.98 46.18 0.18 2.24 16 10 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 11 N -0.28 -7.30 3.28 -321.54 -1.05 -8.35 16 12 C -0.02 -0.49 10.59 83.49 0.88 0.40 16 13 C -0.03 -1.31 6.62 41.60 0.28 -1.03 16 14 C 0.24 10.03 6.82 85.63 0.58 10.62 16 15 N -0.74 -38.95 5.59 -347.18 -1.94 -40.89 16 16 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 18 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 19 N -0.97 -60.36 13.06 21.65 0.28 -60.07 16 20 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 N -0.30 -12.37 12.41 -48.60 -0.60 -12.97 16 25 N -0.11 -3.75 13.16 37.02 0.49 -3.26 16 26 C 0.10 1.89 6.64 86.68 0.58 2.47 16 27 C -0.12 -1.61 6.84 31.18 0.21 -1.40 16 28 C -0.13 -0.93 7.74 31.18 0.24 -0.69 16 29 C -0.12 -0.95 6.18 31.12 0.19 -0.76 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.55 7.44 -2.39 -0.02 0.53 16 32 H 0.03 0.42 7.15 -2.38 -0.02 0.41 16 33 H 0.09 0.19 5.38 -2.39 -0.01 0.18 16 34 H 0.10 0.22 7.31 -2.39 -0.02 0.21 16 35 H 0.11 0.14 7.10 -2.39 -0.02 0.12 16 36 H 0.11 0.26 6.28 -2.39 -0.01 0.25 16 37 H 0.09 0.96 6.39 -2.39 -0.02 0.95 16 38 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.22 4.62 7.01 -2.91 -0.02 4.60 16 40 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.37 21.34 7.66 -92.70 -0.71 20.63 16 43 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.05 1.28 8.03 -2.39 -0.02 1.26 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 1.20 7.55 -2.38 -0.02 1.18 16 47 H 0.08 0.91 7.39 -2.39 -0.02 0.89 16 48 H 0.11 0.34 7.60 -2.39 -0.02 0.32 16 49 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.10 0.28 7.59 -2.39 -0.02 0.26 16 51 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 Total: -1.00 -83.14 402.39 3.12 -80.01 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.24 Total: 22.62 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.44 Total: 3.48 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -5.53 Total: -137.06 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -83.14 3.12 -80.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098702971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.403 kcal (2) G-P(sol) polarization free energy of solvation -83.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds