Wall clock time and date at job start Wed Apr 1 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 112.90949 * 2 1 4 4 C 1.53787 * 113.61372 * 228.74993 * 2 1 3 5 5 C 1.53960 * 87.10735 * 220.09208 * 4 2 1 6 6 C 1.53776 * 113.61095 * 131.25316 * 2 1 3 7 7 H 1.09002 * 113.62113 * 25.35097 * 6 2 1 8 8 C 1.50695 * 113.61579 * 254.52912 * 6 2 1 9 9 O 1.21283 * 120.00034 * 275.82754 * 8 6 2 10 10 N 1.34778 * 120.00222 * 95.82370 * 8 6 2 11 11 C 1.47424 * 125.64692 * 355.48581 * 10 8 6 12 12 C 1.55114 * 104.94142 * 204.03624 * 11 10 8 13 13 C 1.55160 * 101.48799 * 323.21732 * 12 11 10 14 14 H 1.08997 * 110.72105 * 276.83422 * 13 12 11 15 15 N 1.46500 * 110.72049 * 153.73473 * 13 12 11 16 16 C 1.35313 * 125.86992 * 328.84163 * 15 13 12 17 17 C 1.35350 * 106.17488 * 180.24587 * 16 15 13 18 18 C 1.50701 * 126.75212 * 179.77694 * 17 16 15 19 19 N 1.46495 * 109.47039 * 95.00191 * 18 17 16 20 20 C 1.36938 * 119.99992 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00278 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99977 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99834 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47237 * 89.99826 * 24 22 20 26 26 H 1.48504 * 109.47164 * 209.99483 * 24 22 20 27 27 H 1.48502 * 109.47540 * 329.99722 * 24 22 20 28 28 N 1.33777 * 106.49520 * 359.64929 * 17 16 15 29 29 N 1.28632 * 108.88659 * 0.36429 * 28 17 16 30 30 C 1.47027 * 125.64884 * 175.51925 * 10 8 6 31 31 H 1.08993 * 109.47076 * 294.11318 * 1 2 3 32 32 H 1.09001 * 109.46912 * 54.10977 * 1 2 3 33 33 H 1.09000 * 109.47346 * 174.10662 * 1 2 3 34 34 H 1.08999 * 109.47578 * 186.19714 * 3 2 1 35 35 H 1.08997 * 109.47464 * 306.20217 * 3 2 1 36 36 H 1.08998 * 109.47029 * 66.20009 * 3 2 1 37 37 H 1.08998 * 113.61456 * 334.56640 * 4 2 1 38 38 H 1.08994 * 113.61316 * 105.39055 * 4 2 1 39 39 H 1.08995 * 113.61436 * 270.84155 * 5 4 2 40 40 H 1.09003 * 113.66252 * 139.89136 * 5 4 2 41 41 H 1.09005 * 110.36339 * 322.99757 * 11 10 8 42 42 H 1.08991 * 110.36873 * 85.31889 * 11 10 8 43 43 H 1.09006 * 111.16491 * 205.12612 * 12 11 10 44 44 H 1.09004 * 110.94140 * 81.21407 * 12 11 10 45 45 H 1.08005 * 126.91262 * 359.97438 * 16 15 13 46 46 H 1.08997 * 109.47403 * 215.00767 * 18 17 16 47 47 H 1.09006 * 109.47160 * 335.00270 * 18 17 16 48 48 H 0.97001 * 120.00286 * 0.02562 * 19 18 17 49 49 H 0.97002 * 120.00134 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.88209 * 59.48996 * 30 10 8 51 51 H 1.09003 * 109.88157 * 298.32179 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0594 5 6 3.1927 -1.3160 0.0013 6 6 2.1459 -0.9291 1.0593 7 1 1.4939 -1.7528 1.3500 8 6 2.7252 -0.1961 2.2417 9 8 3.8524 0.2482 2.1869 10 7 1.9907 -0.0343 3.3602 11 6 0.5829 -0.4378 3.5294 12 6 0.0395 0.4719 4.6621 13 6 1.2728 0.5695 5.5986 14 1 1.3242 -0.2953 6.2601 15 7 1.2377 1.8118 6.3743 16 6 0.7029 2.9861 5.9668 17 6 0.8918 3.8593 6.9835 18 6 0.4760 5.3075 7.0173 19 7 -0.8276 5.4260 7.6751 20 6 -1.4110 6.6561 7.8221 21 1 -0.9103 7.5389 7.4527 22 6 -2.6460 6.7685 8.4458 23 7 -3.2565 5.6927 8.8955 24 14 -3.4422 8.4464 8.6456 25 1 -4.2917 8.7353 7.4623 26 1 -4.2813 8.4535 9.8709 27 1 -2.3867 9.4845 8.7625 28 7 1.5176 3.1833 7.9535 29 7 1.7107 1.9739 7.5604 30 6 2.4606 0.5745 4.6132 31 1 -0.3633 0.4198 0.9379 32 1 -0.3633 0.6025 -0.8326 33 1 -0.3634 -1.0222 -0.1055 34 1 3.2081 1.3463 -0.1109 35 1 1.7080 1.9802 -0.8292 36 1 1.8850 1.9053 0.9403 37 1 1.4946 -1.7535 -1.3490 38 1 2.5638 -0.3989 -1.9152 39 1 4.0724 -0.6725 0.0017 40 1 3.4431 -2.3769 0.0023 41 1 0.0268 -0.2700 2.6070 42 1 0.5214 -1.4850 3.8253 43 1 -0.8026 0.0044 5.1726 44 1 -0.2361 1.4531 4.2754 45 1 0.2257 3.1874 5.0190 46 1 1.2162 5.8852 7.5709 47 1 0.4051 5.6890 5.9987 48 1 -1.2775 4.6331 8.0066 49 1 -4.1197 5.7712 9.3311 50 1 2.7851 1.5986 4.4289 51 1 3.2846 -0.0096 5.0230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098703721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:52 Heat of formation + Delta-G solvation = 103.447524 kcal Electronic energy + Delta-G solvation = -30826.125906 eV Core-core repulsion = 26764.057699 eV Total energy + Delta-G solvation = -4062.068208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.07192 -41.33995 -39.32476 -37.59278 -35.07689 -34.03683 -31.96126 -31.21792 -30.94752 -30.01998 -29.56708 -27.90343 -27.21171 -25.86631 -24.33596 -23.20508 -22.86690 -22.71431 -20.88417 -20.70257 -20.28117 -18.45107 -17.94383 -17.57090 -17.13108 -16.30958 -16.08627 -15.97001 -15.48123 -14.88007 -14.82071 -14.50323 -14.19350 -14.17255 -14.00246 -13.63302 -13.60644 -13.21958 -13.09408 -13.02580 -12.72656 -12.63041 -12.52168 -12.43753 -12.24368 -11.99608 -11.93349 -11.79629 -11.50150 -11.29021 -11.24450 -10.90651 -10.85951 -10.80516 -10.57619 -10.46516 -10.10917 -10.06716 -9.88433 -9.72423 -9.16353 -8.89469 -8.85566 -6.91728 -5.73980 -3.03498 1.74576 2.06381 2.19787 2.65234 2.89049 3.45556 3.50955 3.53075 3.66532 3.76105 3.89297 4.02748 4.13031 4.26078 4.26766 4.38290 4.54697 4.56936 4.63039 4.70402 4.74949 4.87339 4.96807 5.07808 5.10639 5.15849 5.18937 5.22966 5.27673 5.31555 5.34424 5.36908 5.43598 5.49293 5.49943 5.57524 5.58339 5.62887 5.67629 5.78286 5.83806 5.89324 6.03208 6.17259 6.38723 6.64949 6.72664 6.78180 6.98105 7.71494 7.74857 8.43292 8.80946 9.55177 10.10666 10.46823 11.48800 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.002178 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.413512 B =12850.612992 C =13737.926799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.134 4.134 4 C -0.132 4.132 5 C -0.119 4.119 6 C -0.129 4.129 7 H 0.110 0.890 8 C 0.545 3.455 9 O -0.531 6.531 10 N -0.619 5.619 11 C 0.098 3.902 12 C -0.144 4.144 13 C 0.138 3.862 14 H 0.130 0.870 15 N -0.294 5.294 16 C -0.042 4.042 17 C -0.002 4.002 18 C 0.232 3.768 19 N -0.725 5.725 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 N -0.250 5.250 29 N -0.093 5.093 30 C 0.101 3.899 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.186 0.814 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.080 0.920 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.412 -20.205 -22.173 31.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.191 4.191 4 C -0.169 4.169 5 C -0.156 4.156 6 C -0.150 4.150 7 H 0.128 0.872 8 C 0.334 3.666 9 O -0.407 6.407 10 N -0.355 5.355 11 C -0.025 4.025 12 C -0.182 4.182 13 C 0.034 3.966 14 H 0.147 0.853 15 N -0.088 5.088 16 C -0.192 4.192 17 C -0.139 4.139 18 C 0.103 3.897 19 N -0.370 5.370 20 C -0.370 4.370 21 H 0.091 0.909 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 N -0.118 5.118 29 N -0.071 5.071 30 C -0.023 4.023 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.114 0.886 45 H 0.203 0.797 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.789 -20.470 -21.077 30.970 hybrid contribution -1.369 0.916 -0.474 1.714 sum 8.420 -19.554 -21.552 30.294 Atomic orbital electron populations 1.21860 0.93507 1.02154 1.02374 1.21751 0.95417 0.94903 0.94612 1.21656 1.01499 0.93801 1.02144 1.23040 0.98038 0.99027 0.96831 1.22849 0.97212 1.02063 0.93522 1.22972 1.00468 0.99518 0.92064 0.87232 1.20225 0.85010 0.79383 0.81949 1.90717 1.19071 1.49424 1.81443 1.48429 1.13139 1.61494 1.12422 1.22494 0.81553 0.98845 0.99580 1.23338 0.96870 1.02654 0.95374 1.22500 0.96614 0.84895 0.92600 0.85256 1.47102 1.39291 1.09806 1.12619 1.23259 1.06582 0.85655 1.03680 1.22471 1.01499 0.99458 0.90518 1.18958 0.89351 0.84479 0.96910 1.42300 1.17267 1.07443 1.70020 1.19234 1.00284 0.85833 1.31646 0.90886 1.24758 0.97773 0.97185 1.01243 1.69680 1.16695 1.26996 1.44710 0.86156 0.79171 0.83501 0.77151 1.21749 1.21794 1.20656 1.75112 1.14880 0.97418 1.24383 1.78294 1.18656 1.14628 0.95519 1.22192 0.95891 1.00624 0.83630 0.92224 0.91796 0.92120 0.91493 0.91832 0.92464 0.89734 0.90733 0.88477 0.90910 0.88999 0.90284 0.87628 0.88602 0.79679 0.94253 0.94485 0.78107 0.93530 0.90185 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 8.82 37.16 0.33 -0.32 16 2 C -0.07 -0.39 1.31 -153.70 -0.20 -0.59 16 3 C -0.13 -1.02 7.96 37.15 0.30 -0.72 16 4 C -0.13 -0.66 7.22 -25.82 -0.19 -0.85 16 5 C -0.12 -0.76 7.15 -25.82 -0.18 -0.95 16 6 C -0.13 -0.83 2.79 -90.96 -0.25 -1.08 16 7 H 0.11 0.50 7.73 -51.93 -0.40 0.10 16 8 C 0.54 5.18 5.96 -10.99 -0.07 5.11 16 9 O -0.53 -7.11 15.72 5.55 0.09 -7.02 16 10 N -0.62 -4.96 3.33 -170.39 -0.57 -5.52 16 11 C 0.10 0.48 6.41 -2.42 -0.02 0.47 16 12 C -0.14 -0.91 6.48 -24.47 -0.16 -1.06 16 13 C 0.14 1.22 3.99 -66.09 -0.26 0.96 16 14 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 15 N -0.29 -4.04 3.29 -52.98 -0.17 -4.21 16 16 C -0.04 -0.62 10.59 -17.05 -0.18 -0.81 16 17 C 0.00 -0.04 6.62 -82.77 -0.55 -0.58 16 18 C 0.23 4.92 6.82 -5.20 -0.04 4.88 16 19 N -0.73 -18.98 5.59 -61.09 -0.34 -19.32 16 20 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 24 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 N -0.25 -5.13 12.41 33.29 0.41 -4.72 16 29 N -0.09 -1.63 13.17 60.35 0.79 -0.84 16 30 C 0.10 0.94 6.63 -3.06 -0.02 0.92 16 31 H 0.06 0.27 6.26 -51.93 -0.32 -0.05 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.21 8.06 -51.93 -0.42 -0.21 16 34 H 0.07 0.59 7.06 -51.93 -0.37 0.23 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.08 0.32 8.04 -51.93 -0.42 -0.09 16 38 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 39 H 0.10 0.81 6.82 -51.93 -0.35 0.45 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.35 5.47 -51.93 -0.28 0.06 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.67 6.33 -51.93 -0.33 0.34 16 45 H 0.19 2.19 6.93 -52.48 -0.36 1.83 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.39 10.84 7.66 -40.82 -0.31 10.53 16 49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 50 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 51 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -36.03 405.24 -7.87 -43.90 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.16 Total: 4.05 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.74 Total: -2.01 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.85 Total: -62.52 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: 0.09 Total: -7.02 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.03 -7.87 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098703721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.351 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds