Wall clock time and date at job start Wed Apr 1 2020 04:27:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52993 * 112.90949 * 2 1
4 4 C 1.53787 * 113.61372 * 228.74993 * 2 1 3
5 5 C 1.53960 * 87.10735 * 220.09208 * 4 2 1
6 6 C 1.53776 * 113.61095 * 131.25316 * 2 1 3
7 7 H 1.09002 * 113.62113 * 25.35097 * 6 2 1
8 8 C 1.50695 * 113.61579 * 254.52912 * 6 2 1
9 9 O 1.21283 * 120.00034 * 275.82754 * 8 6 2
10 10 N 1.34778 * 120.00222 * 95.82370 * 8 6 2
11 11 C 1.47424 * 125.64692 * 355.48581 * 10 8 6
12 12 C 1.55114 * 104.94142 * 204.03624 * 11 10 8
13 13 C 1.55160 * 101.48799 * 323.21732 * 12 11 10
14 14 H 1.08997 * 110.72105 * 276.83422 * 13 12 11
15 15 N 1.46500 * 110.72049 * 153.73473 * 13 12 11
16 16 C 1.35313 * 125.86992 * 328.84163 * 15 13 12
17 17 C 1.35350 * 106.17488 * 180.24587 * 16 15 13
18 18 C 1.50701 * 126.75212 * 179.77694 * 17 16 15
19 19 N 1.46495 * 109.47039 * 95.00191 * 18 17 16
20 20 C 1.36938 * 119.99992 * 180.02562 * 19 18 17
21 21 H 1.08001 * 120.00278 * 0.02562 * 20 19 18
22 22 C 1.38816 * 119.99977 * 180.02562 * 20 19 18
23 23 N 1.31615 * 120.00170 * 359.97438 * 22 20 19
24 24 Si 1.86794 * 119.99834 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47237 * 89.99826 * 24 22 20
26 26 H 1.48504 * 109.47164 * 209.99483 * 24 22 20
27 27 H 1.48502 * 109.47540 * 329.99722 * 24 22 20
28 28 N 1.33777 * 106.49520 * 359.64929 * 17 16 15
29 29 N 1.28632 * 108.88659 * 0.36429 * 28 17 16
30 30 C 1.47027 * 125.64884 * 175.51925 * 10 8 6
31 31 H 1.08993 * 109.47076 * 294.11318 * 1 2 3
32 32 H 1.09001 * 109.46912 * 54.10977 * 1 2 3
33 33 H 1.09000 * 109.47346 * 174.10662 * 1 2 3
34 34 H 1.08999 * 109.47578 * 186.19714 * 3 2 1
35 35 H 1.08997 * 109.47464 * 306.20217 * 3 2 1
36 36 H 1.08998 * 109.47029 * 66.20009 * 3 2 1
37 37 H 1.08998 * 113.61456 * 334.56640 * 4 2 1
38 38 H 1.08994 * 113.61316 * 105.39055 * 4 2 1
39 39 H 1.08995 * 113.61436 * 270.84155 * 5 4 2
40 40 H 1.09003 * 113.66252 * 139.89136 * 5 4 2
41 41 H 1.09005 * 110.36339 * 322.99757 * 11 10 8
42 42 H 1.08991 * 110.36873 * 85.31889 * 11 10 8
43 43 H 1.09006 * 111.16491 * 205.12612 * 12 11 10
44 44 H 1.09004 * 110.94140 * 81.21407 * 12 11 10
45 45 H 1.08005 * 126.91262 * 359.97438 * 16 15 13
46 46 H 1.08997 * 109.47403 * 215.00767 * 18 17 16
47 47 H 1.09006 * 109.47160 * 335.00270 * 18 17 16
48 48 H 0.97001 * 120.00286 * 0.02562 * 19 18 17
49 49 H 0.97002 * 120.00134 * 180.02562 * 23 22 20
50 50 H 1.08997 * 109.88209 * 59.48996 * 30 10 8
51 51 H 1.09003 * 109.88157 * 298.32179 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1256 1.4093 0.0000
4 6 2.1460 -0.9291 -1.0594
5 6 3.1927 -1.3160 0.0013
6 6 2.1459 -0.9291 1.0593
7 1 1.4939 -1.7528 1.3500
8 6 2.7252 -0.1961 2.2417
9 8 3.8524 0.2482 2.1869
10 7 1.9907 -0.0343 3.3602
11 6 0.5829 -0.4378 3.5294
12 6 0.0395 0.4719 4.6621
13 6 1.2728 0.5695 5.5986
14 1 1.3242 -0.2953 6.2601
15 7 1.2377 1.8118 6.3743
16 6 0.7029 2.9861 5.9668
17 6 0.8918 3.8593 6.9835
18 6 0.4760 5.3075 7.0173
19 7 -0.8276 5.4260 7.6751
20 6 -1.4110 6.6561 7.8221
21 1 -0.9103 7.5389 7.4527
22 6 -2.6460 6.7685 8.4458
23 7 -3.2565 5.6927 8.8955
24 14 -3.4422 8.4464 8.6456
25 1 -4.2917 8.7353 7.4623
26 1 -4.2813 8.4535 9.8709
27 1 -2.3867 9.4845 8.7625
28 7 1.5176 3.1833 7.9535
29 7 1.7107 1.9739 7.5604
30 6 2.4606 0.5745 4.6132
31 1 -0.3633 0.4198 0.9379
32 1 -0.3633 0.6025 -0.8326
33 1 -0.3634 -1.0222 -0.1055
34 1 3.2081 1.3463 -0.1109
35 1 1.7080 1.9802 -0.8292
36 1 1.8850 1.9053 0.9403
37 1 1.4946 -1.7535 -1.3490
38 1 2.5638 -0.3989 -1.9152
39 1 4.0724 -0.6725 0.0017
40 1 3.4431 -2.3769 0.0023
41 1 0.0268 -0.2700 2.6070
42 1 0.5214 -1.4850 3.8253
43 1 -0.8026 0.0044 5.1726
44 1 -0.2361 1.4531 4.2754
45 1 0.2257 3.1874 5.0190
46 1 1.2162 5.8852 7.5709
47 1 0.4051 5.6890 5.9987
48 1 -1.2775 4.6331 8.0066
49 1 -4.1197 5.7712 9.3311
50 1 2.7851 1.5986 4.4289
51 1 3.2846 -0.0096 5.0230
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001098703721.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:27:52
Heat of formation + Delta-G solvation = 103.447524 kcal
Electronic energy + Delta-G solvation = -30826.125906 eV
Core-core repulsion = 26764.057699 eV
Total energy + Delta-G solvation = -4062.068208 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-43.07192 -41.33995 -39.32476 -37.59278 -35.07689 -34.03683 -31.96126 -31.21792
-30.94752 -30.01998 -29.56708 -27.90343 -27.21171 -25.86631 -24.33596 -23.20508
-22.86690 -22.71431 -20.88417 -20.70257 -20.28117 -18.45107 -17.94383 -17.57090
-17.13108 -16.30958 -16.08627 -15.97001 -15.48123 -14.88007 -14.82071 -14.50323
-14.19350 -14.17255 -14.00246 -13.63302 -13.60644 -13.21958 -13.09408 -13.02580
-12.72656 -12.63041 -12.52168 -12.43753 -12.24368 -11.99608 -11.93349 -11.79629
-11.50150 -11.29021 -11.24450 -10.90651 -10.85951 -10.80516 -10.57619 -10.46516
-10.10917 -10.06716 -9.88433 -9.72423 -9.16353 -8.89469 -8.85566 -6.91728
-5.73980 -3.03498 1.74576 2.06381 2.19787 2.65234 2.89049 3.45556
3.50955 3.53075 3.66532 3.76105 3.89297 4.02748 4.13031 4.26078
4.26766 4.38290 4.54697 4.56936 4.63039 4.70402 4.74949 4.87339
4.96807 5.07808 5.10639 5.15849 5.18937 5.22966 5.27673 5.31555
5.34424 5.36908 5.43598 5.49293 5.49943 5.57524 5.58339 5.62887
5.67629 5.78286 5.83806 5.89324 6.03208 6.17259 6.38723 6.64949
6.72664 6.78180 6.98105 7.71494 7.74857 8.43292 8.80946 9.55177
10.10666 10.46823 11.48800
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.015169 B = 0.002178 C = 0.002038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1845.413512 B =12850.612992 C =13737.926799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.066 4.066
3 C -0.134 4.134
4 C -0.132 4.132
5 C -0.119 4.119
6 C -0.129 4.129
7 H 0.110 0.890
8 C 0.545 3.455
9 O -0.531 6.531
10 N -0.619 5.619
11 C 0.098 3.902
12 C -0.144 4.144
13 C 0.138 3.862
14 H 0.130 0.870
15 N -0.294 5.294
16 C -0.042 4.042
17 C -0.002 4.002
18 C 0.232 3.768
19 N -0.725 5.725
20 C -0.239 4.239
21 H 0.073 0.927
22 C -0.014 4.014
23 N -0.932 5.932
24 Si 0.909 3.091
25 H -0.290 1.290
26 H -0.292 1.292
27 H -0.281 1.281
28 N -0.250 5.250
29 N -0.093 5.093
30 C 0.101 3.899
31 H 0.059 0.941
32 H 0.063 0.937
33 H 0.060 0.940
34 H 0.066 0.934
35 H 0.063 0.937
36 H 0.056 0.944
37 H 0.084 0.916
38 H 0.074 0.926
39 H 0.097 0.903
40 H 0.072 0.928
41 H 0.092 0.908
42 H 0.079 0.921
43 H 0.105 0.895
44 H 0.096 0.904
45 H 0.186 0.814
46 H 0.040 0.960
47 H 0.038 0.962
48 H 0.385 0.615
49 H 0.255 0.745
50 H 0.080 0.920
51 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.412 -20.205 -22.173 31.155
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.067 4.067
3 C -0.191 4.191
4 C -0.169 4.169
5 C -0.156 4.156
6 C -0.150 4.150
7 H 0.128 0.872
8 C 0.334 3.666
9 O -0.407 6.407
10 N -0.355 5.355
11 C -0.025 4.025
12 C -0.182 4.182
13 C 0.034 3.966
14 H 0.147 0.853
15 N -0.088 5.088
16 C -0.192 4.192
17 C -0.139 4.139
18 C 0.103 3.897
19 N -0.370 5.370
20 C -0.370 4.370
21 H 0.091 0.909
22 C -0.210 4.210
23 N -0.581 5.581
24 Si 0.740 3.260
25 H -0.217 1.217
26 H -0.218 1.218
27 H -0.207 1.207
28 N -0.118 5.118
29 N -0.071 5.071
30 C -0.023 4.023
31 H 0.078 0.922
32 H 0.082 0.918
33 H 0.079 0.921
34 H 0.085 0.915
35 H 0.082 0.918
36 H 0.075 0.925
37 H 0.103 0.897
38 H 0.093 0.907
39 H 0.115 0.885
40 H 0.091 0.909
41 H 0.110 0.890
42 H 0.097 0.903
43 H 0.124 0.876
44 H 0.114 0.886
45 H 0.203 0.797
46 H 0.057 0.943
47 H 0.055 0.945
48 H 0.219 0.781
49 H 0.065 0.935
50 H 0.098 0.902
51 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 9.789 -20.470 -21.077 30.970
hybrid contribution -1.369 0.916 -0.474 1.714
sum 8.420 -19.554 -21.552 30.294
Atomic orbital electron populations
1.21860 0.93507 1.02154 1.02374 1.21751 0.95417 0.94903 0.94612
1.21656 1.01499 0.93801 1.02144 1.23040 0.98038 0.99027 0.96831
1.22849 0.97212 1.02063 0.93522 1.22972 1.00468 0.99518 0.92064
0.87232 1.20225 0.85010 0.79383 0.81949 1.90717 1.19071 1.49424
1.81443 1.48429 1.13139 1.61494 1.12422 1.22494 0.81553 0.98845
0.99580 1.23338 0.96870 1.02654 0.95374 1.22500 0.96614 0.84895
0.92600 0.85256 1.47102 1.39291 1.09806 1.12619 1.23259 1.06582
0.85655 1.03680 1.22471 1.01499 0.99458 0.90518 1.18958 0.89351
0.84479 0.96910 1.42300 1.17267 1.07443 1.70020 1.19234 1.00284
0.85833 1.31646 0.90886 1.24758 0.97773 0.97185 1.01243 1.69680
1.16695 1.26996 1.44710 0.86156 0.79171 0.83501 0.77151 1.21749
1.21794 1.20656 1.75112 1.14880 0.97418 1.24383 1.78294 1.18656
1.14628 0.95519 1.22192 0.95891 1.00624 0.83630 0.92224 0.91796
0.92120 0.91493 0.91832 0.92464 0.89734 0.90733 0.88477 0.90910
0.88999 0.90284 0.87628 0.88602 0.79679 0.94253 0.94485 0.78107
0.93530 0.90185 0.89674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.65 8.82 37.16 0.33 -0.32 16
2 C -0.07 -0.39 1.31 -153.70 -0.20 -0.59 16
3 C -0.13 -1.02 7.96 37.15 0.30 -0.72 16
4 C -0.13 -0.66 7.22 -25.82 -0.19 -0.85 16
5 C -0.12 -0.76 7.15 -25.82 -0.18 -0.95 16
6 C -0.13 -0.83 2.79 -90.96 -0.25 -1.08 16
7 H 0.11 0.50 7.73 -51.93 -0.40 0.10 16
8 C 0.54 5.18 5.96 -10.99 -0.07 5.11 16
9 O -0.53 -7.11 15.72 5.55 0.09 -7.02 16
10 N -0.62 -4.96 3.33 -170.39 -0.57 -5.52 16
11 C 0.10 0.48 6.41 -2.42 -0.02 0.47 16
12 C -0.14 -0.91 6.48 -24.47 -0.16 -1.06 16
13 C 0.14 1.22 3.99 -66.09 -0.26 0.96 16
14 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16
15 N -0.29 -4.04 3.29 -52.98 -0.17 -4.21 16
16 C -0.04 -0.62 10.59 -17.05 -0.18 -0.81 16
17 C 0.00 -0.04 6.62 -82.77 -0.55 -0.58 16
18 C 0.23 4.92 6.82 -5.20 -0.04 4.88 16
19 N -0.73 -18.98 5.59 -61.09 -0.34 -19.32 16
20 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16
21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16
22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16
23 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16
24 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16
25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
28 N -0.25 -5.13 12.41 33.29 0.41 -4.72 16
29 N -0.09 -1.63 13.17 60.35 0.79 -0.84 16
30 C 0.10 0.94 6.63 -3.06 -0.02 0.92 16
31 H 0.06 0.27 6.26 -51.93 -0.32 -0.05 16
32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
33 H 0.06 0.21 8.06 -51.93 -0.42 -0.21 16
34 H 0.07 0.59 7.06 -51.93 -0.37 0.23 16
35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
36 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16
37 H 0.08 0.32 8.04 -51.93 -0.42 -0.09 16
38 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16
39 H 0.10 0.81 6.82 -51.93 -0.35 0.45 16
40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
41 H 0.09 0.35 5.47 -51.93 -0.28 0.06 16
42 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16
43 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16
44 H 0.10 0.67 6.33 -51.93 -0.33 0.34 16
45 H 0.19 2.19 6.93 -52.48 -0.36 1.83 16
46 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16
47 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
48 H 0.39 10.84 7.66 -40.82 -0.31 10.53 16
49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16
50 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16
51 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16
LS Contribution 405.24 15.07 6.11 6.11
Total: -1.00 -36.03 405.24 -7.87 -43.90
By element:
Atomic # 1 Polarization: 12.21 SS G_CDS: -8.16 Total: 4.05 kcal
Atomic # 6 Polarization: -0.27 SS G_CDS: -1.74 Total: -2.01 kcal
Atomic # 7 Polarization: -63.37 SS G_CDS: 0.85 Total: -62.52 kcal
Atomic # 8 Polarization: -7.11 SS G_CDS: 0.09 Total: -7.02 kcal
Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -36.03 -7.87 -43.90 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098703721.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 147.351 kcal
(2) G-P(sol) polarization free energy of solvation -36.029 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.322 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal
(6) G-S(sol) free energy of system = (1) + (5) 103.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds