Wall clock time and date at job start Wed Apr 1 2020 04:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 112.90949 * 2 1 4 4 C 1.53787 * 113.61372 * 228.74993 * 2 1 3 5 5 C 1.53960 * 87.10735 * 220.09208 * 4 2 1 6 6 C 1.53776 * 113.61095 * 131.25316 * 2 1 3 7 7 H 1.09002 * 113.62113 * 25.35097 * 6 2 1 8 8 C 1.50695 * 113.61579 * 254.52912 * 6 2 1 9 9 O 1.21283 * 120.00034 * 275.82754 * 8 6 2 10 10 N 1.34778 * 120.00222 * 95.82370 * 8 6 2 11 11 C 1.47424 * 125.64692 * 355.48581 * 10 8 6 12 12 C 1.55114 * 104.94142 * 204.03624 * 11 10 8 13 13 C 1.55160 * 101.48799 * 323.21732 * 12 11 10 14 14 H 1.08997 * 110.72105 * 276.83422 * 13 12 11 15 15 N 1.46500 * 110.72049 * 153.73473 * 13 12 11 16 16 C 1.35313 * 125.86992 * 328.84163 * 15 13 12 17 17 C 1.35350 * 106.17488 * 180.24587 * 16 15 13 18 18 C 1.50701 * 126.75212 * 179.77694 * 17 16 15 19 19 N 1.46495 * 109.47039 * 95.00191 * 18 17 16 20 20 C 1.36938 * 119.99992 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00278 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99977 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99834 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47237 * 89.99826 * 24 22 20 26 26 H 1.48504 * 109.47164 * 209.99483 * 24 22 20 27 27 H 1.48502 * 109.47540 * 329.99722 * 24 22 20 28 28 N 1.33777 * 106.49520 * 359.64929 * 17 16 15 29 29 N 1.28632 * 108.88659 * 0.36429 * 28 17 16 30 30 C 1.47027 * 125.64884 * 175.51925 * 10 8 6 31 31 H 1.08993 * 109.47076 * 294.11318 * 1 2 3 32 32 H 1.09001 * 109.46912 * 54.10977 * 1 2 3 33 33 H 1.09000 * 109.47346 * 174.10662 * 1 2 3 34 34 H 1.08999 * 109.47578 * 186.19714 * 3 2 1 35 35 H 1.08997 * 109.47464 * 306.20217 * 3 2 1 36 36 H 1.08998 * 109.47029 * 66.20009 * 3 2 1 37 37 H 1.08998 * 113.61456 * 334.56640 * 4 2 1 38 38 H 1.08994 * 113.61316 * 105.39055 * 4 2 1 39 39 H 1.08995 * 113.61436 * 270.84155 * 5 4 2 40 40 H 1.09003 * 113.66252 * 139.89136 * 5 4 2 41 41 H 1.09005 * 110.36339 * 322.99757 * 11 10 8 42 42 H 1.08991 * 110.36873 * 85.31889 * 11 10 8 43 43 H 1.09006 * 111.16491 * 205.12612 * 12 11 10 44 44 H 1.09004 * 110.94140 * 81.21407 * 12 11 10 45 45 H 1.08005 * 126.91262 * 359.97438 * 16 15 13 46 46 H 1.08997 * 109.47403 * 215.00767 * 18 17 16 47 47 H 1.09006 * 109.47160 * 335.00270 * 18 17 16 48 48 H 0.97001 * 120.00286 * 0.02562 * 19 18 17 49 49 H 0.97002 * 120.00134 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.88209 * 59.48996 * 30 10 8 51 51 H 1.09003 * 109.88157 * 298.32179 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0594 5 6 3.1927 -1.3160 0.0013 6 6 2.1459 -0.9291 1.0593 7 1 1.4939 -1.7528 1.3500 8 6 2.7252 -0.1961 2.2417 9 8 3.8524 0.2482 2.1869 10 7 1.9907 -0.0343 3.3602 11 6 0.5829 -0.4378 3.5294 12 6 0.0395 0.4719 4.6621 13 6 1.2728 0.5695 5.5986 14 1 1.3242 -0.2953 6.2601 15 7 1.2377 1.8118 6.3743 16 6 0.7029 2.9861 5.9668 17 6 0.8918 3.8593 6.9835 18 6 0.4760 5.3075 7.0173 19 7 -0.8276 5.4260 7.6751 20 6 -1.4110 6.6561 7.8221 21 1 -0.9103 7.5389 7.4527 22 6 -2.6460 6.7685 8.4458 23 7 -3.2565 5.6927 8.8955 24 14 -3.4422 8.4464 8.6456 25 1 -4.2917 8.7353 7.4623 26 1 -4.2813 8.4535 9.8709 27 1 -2.3867 9.4845 8.7625 28 7 1.5176 3.1833 7.9535 29 7 1.7107 1.9739 7.5604 30 6 2.4606 0.5745 4.6132 31 1 -0.3633 0.4198 0.9379 32 1 -0.3633 0.6025 -0.8326 33 1 -0.3634 -1.0222 -0.1055 34 1 3.2081 1.3463 -0.1109 35 1 1.7080 1.9802 -0.8292 36 1 1.8850 1.9053 0.9403 37 1 1.4946 -1.7535 -1.3490 38 1 2.5638 -0.3989 -1.9152 39 1 4.0724 -0.6725 0.0017 40 1 3.4431 -2.3769 0.0023 41 1 0.0268 -0.2700 2.6070 42 1 0.5214 -1.4850 3.8253 43 1 -0.8026 0.0044 5.1726 44 1 -0.2361 1.4531 4.2754 45 1 0.2257 3.1874 5.0190 46 1 1.2162 5.8852 7.5709 47 1 0.4051 5.6890 5.9987 48 1 -1.2775 4.6331 8.0066 49 1 -4.1197 5.7712 9.3311 50 1 2.7851 1.5986 4.4289 51 1 3.2846 -0.0096 5.0230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098703721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:51 Heat of formation + Delta-G solvation = 78.846871 kcal Electronic energy + Delta-G solvation = -30827.192671 eV Core-core repulsion = 26764.057699 eV Total energy + Delta-G solvation = -4063.134972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.35409 -41.94587 -39.94642 -38.36110 -36.83803 -35.25788 -33.71957 -31.90417 -31.66269 -31.60962 -30.33686 -28.38894 -27.91857 -27.56846 -25.09263 -24.83638 -23.92968 -23.31209 -22.24488 -21.67521 -20.93275 -19.39630 -18.99376 -18.62927 -18.22806 -17.38421 -16.99929 -16.75381 -16.54998 -16.09107 -15.95408 -15.55080 -15.39774 -15.06530 -14.89665 -14.66599 -14.54343 -14.28902 -14.07142 -13.90963 -13.67208 -13.53420 -13.22652 -13.18684 -13.11780 -12.98673 -12.85253 -12.76704 -12.59629 -12.35121 -12.26285 -12.09411 -12.06777 -11.90339 -11.80530 -11.78715 -11.34048 -11.12705 -11.00950 -10.95805 -10.71337 -10.26936 -9.83499 -9.02364 -7.93185 -5.23639 0.51663 1.13908 1.41912 1.49358 1.51059 1.52645 1.61444 1.92292 2.59562 2.99103 3.10059 3.34099 3.41832 3.42528 3.52204 3.60781 3.67579 3.80298 3.81592 3.89800 4.04727 4.06590 4.19058 4.23088 4.26342 4.35232 4.44135 4.49762 4.55878 4.57967 4.65101 4.70117 4.75427 4.80619 4.83278 4.91009 4.94590 4.96444 5.03145 5.08023 5.09000 5.13823 5.15666 5.20441 5.32488 5.46747 5.51153 5.56484 5.61635 6.26476 6.34502 7.05307 7.33555 7.45622 8.03783 8.30603 9.30637 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.002178 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.413512 B =12850.612992 C =13737.926799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.132 4.132 4 C -0.122 4.122 5 C -0.126 4.126 6 C -0.123 4.123 7 H 0.141 0.859 8 C 0.539 3.461 9 O -0.581 6.581 10 N -0.616 5.616 11 C 0.100 3.900 12 C -0.138 4.138 13 C 0.131 3.869 14 H 0.149 0.851 15 N -0.277 5.277 16 C -0.017 4.017 17 C -0.034 4.034 18 C 0.235 3.765 19 N -0.737 5.737 20 C -0.244 4.244 21 H 0.083 0.917 22 C -0.076 4.076 23 N -0.971 5.971 24 Si 0.979 3.021 25 H -0.282 1.282 26 H -0.298 1.298 27 H -0.269 1.269 28 N -0.296 5.296 29 N -0.107 5.107 30 C 0.106 3.894 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.220 0.780 46 H 0.028 0.972 47 H 0.061 0.939 48 H 0.372 0.628 49 H 0.251 0.749 50 H 0.053 0.947 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 -21.800 -24.339 33.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.190 4.190 4 C -0.159 4.159 5 C -0.164 4.164 6 C -0.144 4.144 7 H 0.158 0.842 8 C 0.330 3.670 9 O -0.461 6.461 10 N -0.351 5.351 11 C -0.021 4.021 12 C -0.176 4.176 13 C 0.029 3.971 14 H 0.167 0.833 15 N -0.071 5.071 16 C -0.168 4.168 17 C -0.172 4.172 18 C 0.108 3.892 19 N -0.380 5.380 20 C -0.376 4.376 21 H 0.101 0.899 22 C -0.268 4.268 23 N -0.622 5.622 24 Si 0.807 3.193 25 H -0.208 1.208 26 H -0.225 1.225 27 H -0.194 1.194 28 N -0.163 5.163 29 N -0.085 5.085 30 C -0.019 4.019 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.143 0.857 44 H 0.110 0.890 45 H 0.237 0.763 46 H 0.046 0.954 47 H 0.079 0.921 48 H 0.203 0.797 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.057 -22.087 -23.262 33.074 hybrid contribution -0.698 1.344 0.121 1.519 sum 7.359 -20.743 -23.141 31.937 Atomic orbital electron populations 1.21867 0.91803 1.03488 1.02506 1.21734 0.96566 0.93541 0.94729 1.21616 1.00336 0.95506 1.01499 1.23041 0.97473 0.99276 0.96082 1.22834 0.96750 1.02207 0.94595 1.23116 1.00715 1.00054 0.90516 0.84174 1.20880 0.84498 0.78889 0.82755 1.90697 1.21443 1.51551 1.82375 1.48509 1.14441 1.60720 1.11398 1.22767 0.79388 1.00000 0.99985 1.23425 0.96040 1.03131 0.95035 1.22978 0.98028 0.83295 0.92780 0.83316 1.47440 1.37054 1.10911 1.11671 1.23595 1.04646 0.85023 1.03568 1.22279 1.03674 0.99219 0.92067 1.18957 0.86844 0.86313 0.97131 1.42479 1.18791 1.06324 1.70420 1.19679 1.00350 0.86930 1.30615 0.89929 1.25628 0.98655 1.00882 1.01672 1.69847 1.16977 1.29214 1.46139 0.85068 0.78168 0.79286 0.76772 1.20841 1.22473 1.19433 1.75039 1.16498 0.98672 1.26041 1.78177 1.19445 1.13688 0.97208 1.22001 0.96105 0.99201 0.84624 0.92052 0.91846 0.90100 0.93658 0.90958 0.94180 0.87404 0.91018 0.91341 0.89677 0.87065 0.87341 0.85669 0.89018 0.76332 0.95416 0.92134 0.79694 0.94017 0.92892 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.82 71.98 0.64 -0.12 16 2 C -0.07 -0.62 1.31 -51.66 -0.07 -0.69 16 3 C -0.13 -1.98 7.96 71.98 0.57 -1.41 16 4 C -0.12 -0.93 7.22 31.18 0.23 -0.70 16 5 C -0.13 -1.47 7.15 31.18 0.22 -1.25 16 6 C -0.12 -1.30 2.79 -11.02 -0.03 -1.33 16 7 H 0.14 0.63 7.73 -2.39 -0.02 0.61 16 8 C 0.54 9.79 5.96 87.66 0.52 10.32 16 9 O -0.58 -16.24 15.72 -3.04 -0.05 -16.29 16 10 N -0.62 -8.74 3.33 -811.38 -2.70 -11.44 16 11 C 0.10 0.58 6.41 86.93 0.56 1.14 16 12 C -0.14 -1.25 6.48 32.06 0.21 -1.04 16 13 C 0.13 2.06 3.99 46.18 0.18 2.24 16 14 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 15 N -0.28 -7.33 3.29 -321.53 -1.06 -8.39 16 16 C -0.02 -0.49 10.59 83.49 0.88 0.40 16 17 C -0.03 -1.31 6.62 41.60 0.28 -1.04 16 18 C 0.24 10.04 6.82 85.63 0.58 10.62 16 19 N -0.74 -38.98 5.59 -347.18 -1.94 -40.92 16 20 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 21 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 22 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 23 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 24 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 N -0.30 -12.40 12.41 -48.60 -0.60 -13.01 16 29 N -0.11 -3.78 13.17 37.02 0.49 -3.29 16 30 C 0.11 1.90 6.63 86.73 0.57 2.48 16 31 H 0.06 0.32 6.26 -2.39 -0.01 0.30 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.15 8.06 -2.39 -0.02 0.13 16 34 H 0.04 0.86 7.06 -2.39 -0.02 0.84 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.04 0.72 7.66 -2.39 -0.02 0.70 16 37 H 0.11 0.38 8.04 -2.39 -0.02 0.36 16 38 H 0.07 0.61 8.10 -2.39 -0.02 0.59 16 39 H 0.07 1.21 6.82 -2.39 -0.02 1.19 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.11 0.31 5.47 -2.38 -0.01 0.29 16 42 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.09 0.96 6.33 -2.38 -0.02 0.95 16 45 H 0.22 4.63 6.93 -2.91 -0.02 4.61 16 46 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 48 H 0.37 21.36 7.66 -92.71 -0.71 20.65 16 49 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 50 H 0.05 1.25 8.03 -2.39 -0.02 1.23 16 51 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -82.09 405.24 3.33 -78.76 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.23 Total: 23.66 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.65 Total: 2.71 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -5.53 Total: -137.17 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.05 Total: -16.29 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -82.09 3.33 -78.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098703721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.608 kcal (2) G-P(sol) polarization free energy of solvation -82.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds