Wall clock time and date at job start Wed Apr 1 2020 05:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36596 * 126.57819 * 2 1 4 4 C 1.47523 * 125.77025 * 0.02562 * 3 2 1 5 5 O 1.21597 * 119.99957 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99891 * 179.72231 * 4 3 2 7 7 C 1.46501 * 120.00097 * 180.27357 * 6 4 3 8 8 C 1.54316 * 111.69148 * 298.98445 * 7 6 4 9 9 C 1.55053 * 103.94249 * 262.78914 * 8 7 6 10 10 C 1.55058 * 102.10619 * 319.94695 * 9 8 7 11 11 C 1.54319 * 103.93709 * 40.05564 * 10 9 8 12 12 H 1.09001 * 111.01940 * 96.81171 * 11 10 9 13 13 C 1.53782 * 109.78984 * 221.68733 * 11 10 9 14 14 N 1.47223 * 106.37818 * 95.21716 * 13 11 10 15 15 C 1.36931 * 126.70630 * 211.28408 * 14 13 11 16 16 H 1.07998 * 119.99406 * 13.67518 * 15 14 13 17 17 C 1.38806 * 120.00338 * 193.66925 * 15 14 13 18 18 N 1.31619 * 120.00082 * 8.95379 * 17 15 14 19 19 Si 1.86799 * 120.00408 * 188.94693 * 17 15 14 20 20 H 1.48497 * 109.46875 * 94.98191 * 19 17 15 21 21 H 1.48500 * 109.47528 * 214.98581 * 19 17 15 22 22 H 1.48507 * 109.47046 * 334.98319 * 19 17 15 23 23 C 1.48675 * 107.08778 * 30.74249 * 14 13 11 24 24 N 1.34404 * 108.45839 * 180.26479 * 3 2 1 25 25 N 1.28768 * 109.51887 * 359.55202 * 24 3 2 26 26 N 1.34812 * 126.58094 * 180.02562 * 2 1 3 27 27 C 1.46503 * 126.59630 * 0.03224 * 26 2 1 28 28 C 1.52999 * 109.47015 * 119.99924 * 27 26 2 29 29 C 1.52992 * 109.47326 * 240.00469 * 27 26 2 30 30 H 1.09005 * 109.46885 * 90.02526 * 1 2 3 31 31 H 1.09000 * 109.46854 * 210.01865 * 1 2 3 32 32 H 1.08994 * 109.47375 * 330.02380 * 1 2 3 33 33 H 0.97003 * 120.00038 * 0.27363 * 6 4 3 34 34 H 1.09007 * 110.53595 * 21.40393 * 8 7 6 35 35 H 1.09004 * 110.53730 * 144.17290 * 8 7 6 36 36 H 1.09000 * 110.90393 * 78.14383 * 9 8 7 37 37 H 1.08998 * 110.90856 * 201.71014 * 9 8 7 38 38 H 1.09001 * 110.53611 * 158.66790 * 10 9 8 39 39 H 1.08999 * 110.53484 * 281.30104 * 10 9 8 40 40 H 1.08999 * 110.07702 * 214.44164 * 13 11 10 41 41 H 1.08991 * 110.07673 * 335.99242 * 13 11 10 42 42 H 0.96995 * 120.00713 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.90813 * 210.52782 * 23 14 13 44 44 H 1.09004 * 109.94877 * 88.52331 * 23 14 13 45 45 H 1.09000 * 109.46737 * 0.02562 * 27 26 2 46 46 H 1.08997 * 109.47329 * 300.00496 * 28 27 26 47 47 H 1.09000 * 109.46929 * 60.00655 * 28 27 26 48 48 H 1.09006 * 109.46850 * 180.02562 * 28 27 26 49 49 H 1.08997 * 109.47606 * 59.99702 * 29 27 26 50 50 H 1.09006 * 109.47527 * 180.02562 * 29 27 26 51 51 H 1.09000 * 109.47206 * 299.99705 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6859 2.7627 0.0006 6 7 2.7816 3.4988 0.0061 7 6 2.3374 4.8948 0.0127 8 6 1.5033 5.2338 -1.2405 9 6 2.5253 5.8927 -2.2026 10 6 3.3661 6.7658 -1.2355 11 6 3.5337 5.8785 0.0159 12 1 4.4890 5.3537 -0.0020 13 6 3.3565 6.7290 1.2847 14 7 1.9491 6.5809 1.6906 15 6 1.1777 7.5169 2.3260 16 1 1.5107 8.5428 2.3826 17 6 -0.0322 7.1474 2.8973 18 7 -0.3571 5.8750 2.9852 19 14 -1.1993 8.4559 3.5416 20 1 -2.1992 8.7861 2.4946 21 1 -1.8969 7.9458 4.7492 22 1 -0.4294 9.6762 3.8932 23 6 1.5133 5.2235 1.2687 24 7 3.5984 0.6789 -0.0059 25 7 3.6299 -0.6083 -0.0001 26 7 2.3105 -1.0826 -0.0005 27 6 1.8865 -2.4849 -0.0018 28 6 2.4298 -3.1808 -1.2513 29 6 2.4285 -3.1828 1.2471 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8901 0.5134 33 1 3.7292 3.2913 0.0058 34 1 1.0917 4.3266 -1.6829 35 1 0.7062 5.9344 -0.9913 36 1 3.1468 5.1386 -2.6856 37 1 2.0191 6.5102 -2.9444 38 1 4.3371 6.9956 -1.6742 39 1 2.8329 7.6835 -0.9875 40 1 4.0138 6.3647 2.0742 41 1 3.5752 7.7745 1.0679 42 1 -1.2023 5.6167 3.3847 43 1 0.4495 5.2127 1.0315 44 1 1.7286 4.5020 2.0569 45 1 0.7976 -2.5352 -0.0028 46 1 2.0436 -2.6836 -2.1411 47 1 3.5187 -3.1305 -1.2507 48 1 2.1139 -4.2241 -1.2525 49 1 2.0415 -2.6870 2.1373 50 1 2.1135 -4.2263 1.2460 51 1 3.5174 -3.1325 1.2478 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099098302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:16 Heat of formation + Delta-G solvation = 77.858888 kcal Electronic energy + Delta-G solvation = -32110.349291 eV Core-core repulsion = 28047.171477 eV Total energy + Delta-G solvation = -4063.177814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.25394 -39.87940 -37.84404 -36.58573 -34.23726 -33.43952 -32.83724 -31.43535 -31.02419 -29.13557 -28.17025 -27.80098 -27.31314 -24.61174 -24.38454 -24.06253 -22.90649 -20.83511 -20.49935 -20.38566 -19.29868 -18.57349 -17.51554 -16.83351 -16.32200 -16.15098 -15.58742 -14.91603 -14.66010 -14.44526 -14.23575 -14.10175 -13.84084 -13.51188 -13.48852 -13.30778 -13.25217 -13.12335 -13.05531 -12.72617 -12.57599 -12.30802 -11.99963 -11.96725 -11.82766 -11.60160 -11.16414 -11.07357 -10.88620 -10.86120 -10.63525 -10.49363 -10.46615 -10.24906 -10.21296 -10.05799 -9.89252 -9.82984 -9.63755 -9.36486 -9.04133 -8.49701 -8.34816 -6.70442 -5.64146 -2.99210 1.16119 1.90485 1.92475 3.45459 3.50326 3.52778 3.54653 3.70983 4.00416 4.19840 4.34556 4.46561 4.56783 4.61216 4.82953 4.94632 4.98767 5.04365 5.14391 5.16655 5.22634 5.30413 5.37322 5.41313 5.55125 5.58442 5.65185 5.68583 5.71392 5.84902 5.89716 5.97913 6.01584 6.08864 6.13225 6.17968 6.23735 6.38148 6.43195 6.44218 6.61963 6.75316 6.79057 6.89166 6.94975 7.19209 7.54831 7.74089 7.88008 7.96798 8.15794 8.35210 8.72013 9.25258 9.88816 10.60773 11.48313 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.003106 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.914121 B = 9013.198179 C =10184.402733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.121 3.879 3 C -0.098 4.098 4 C 0.600 3.400 5 O -0.520 6.520 6 N -0.696 5.696 7 C 0.148 3.852 8 C -0.111 4.111 9 C -0.125 4.125 10 C -0.111 4.111 11 C -0.107 4.107 12 H 0.075 0.925 13 C 0.140 3.860 14 N -0.596 5.596 15 C -0.230 4.230 16 H 0.075 0.925 17 C -0.004 4.004 18 N -0.908 5.908 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.181 3.819 24 N -0.206 5.206 25 N -0.072 5.072 26 N -0.360 5.360 27 C 0.144 3.856 28 C -0.161 4.161 29 C -0.163 4.163 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.399 0.601 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.015 0.985 41 H 0.045 0.955 42 H 0.252 0.748 43 H 0.088 0.912 44 H 0.021 0.979 45 H 0.109 0.891 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.081 0.919 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 -17.619 -10.147 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.016 4.016 3 C -0.237 4.237 4 C 0.383 3.617 5 O -0.394 6.394 6 N -0.346 5.346 7 C 0.061 3.939 8 C -0.149 4.149 9 C -0.163 4.163 10 C -0.148 4.148 11 C -0.127 4.127 12 H 0.093 0.907 13 C 0.013 3.987 14 N -0.321 5.321 15 C -0.359 4.359 16 H 0.093 0.907 17 C -0.202 4.202 18 N -0.554 5.554 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.055 3.945 24 N -0.080 5.080 25 N -0.051 5.051 26 N -0.147 5.147 27 C 0.043 3.957 28 C -0.219 4.219 29 C -0.221 4.221 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.032 0.968 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.039 0.961 45 H 0.127 0.873 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.084 0.916 50 H 0.100 0.900 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.414 -17.817 -9.997 21.135 hybrid contribution -1.040 0.451 0.472 1.228 sum 4.374 -17.366 -9.525 20.284 Atomic orbital electron populations 1.20745 0.84764 1.05597 1.04454 1.21936 0.96255 0.86314 0.97120 1.21426 0.88807 0.95829 1.17672 1.16655 0.85955 0.82105 0.76943 1.90817 1.15593 1.83119 1.49898 1.45785 1.09287 1.05542 1.74005 1.22098 0.94869 0.78089 0.98840 1.22666 0.97551 1.00564 0.94159 1.22600 0.97809 0.98488 0.97391 1.22438 0.99142 0.98644 0.94602 1.22809 0.96679 0.96172 0.97019 0.90672 1.21316 0.88294 0.96768 0.92313 1.44754 1.05699 1.14046 1.67645 1.18973 1.00000 0.88819 1.28078 0.90721 1.24871 0.99258 0.96054 0.99995 1.69965 1.23188 1.13644 1.48599 0.86171 0.81214 0.80690 0.78095 1.21631 1.21843 1.20644 1.21638 0.98215 0.85678 0.88998 1.74592 1.19296 1.04096 1.09976 1.81858 0.96388 1.03398 1.23482 1.50568 1.06350 1.07077 1.50754 1.21601 1.00481 0.75490 0.98152 1.22147 1.03149 1.00764 0.95870 1.22159 1.03193 1.00763 0.95987 0.89236 0.91044 0.86370 0.76610 0.91653 0.90073 0.92383 0.92144 0.92465 0.90775 0.96782 0.93625 0.93725 0.89402 0.96111 0.87335 0.91764 0.90748 0.90037 0.91609 0.90036 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.41 36.01 0.34 -0.70 16 2 C 0.12 1.61 7.02 -81.87 -0.57 1.04 16 3 C -0.10 -1.58 6.99 -83.55 -0.58 -2.17 16 4 C 0.60 11.11 7.10 -12.48 -0.09 11.03 16 5 O -0.52 -10.84 12.63 5.28 0.07 -10.77 16 6 N -0.70 -12.49 5.19 -46.71 -0.24 -12.74 16 7 C 0.15 2.92 0.93 -129.73 -0.12 2.79 16 8 C -0.11 -2.09 5.50 -24.96 -0.14 -2.23 16 9 C -0.13 -1.93 6.92 -24.56 -0.17 -2.10 16 10 C -0.11 -1.74 6.25 -24.95 -0.16 -1.90 16 11 C -0.11 -1.90 3.63 -88.53 -0.32 -2.22 16 12 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 13 C 0.14 2.97 6.63 -3.24 -0.02 2.95 16 14 N -0.60 -15.54 3.42 -169.93 -0.58 -16.12 16 15 C -0.23 -6.51 10.28 -15.06 -0.15 -6.67 16 16 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 17 C 0.00 -0.12 5.39 -17.43 -0.09 -0.22 16 18 N -0.91 -27.54 10.82 55.49 0.60 -26.94 16 19 Si 0.91 22.47 29.56 -169.99 -5.03 17.45 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.18 4.58 3.67 -2.44 -0.01 4.57 16 24 N -0.21 -3.30 12.04 32.85 0.40 -2.91 16 25 N -0.07 -1.03 13.67 60.35 0.82 -0.21 16 26 N -0.36 -4.17 3.28 -50.41 -0.17 -4.34 16 27 C 0.14 1.04 3.68 -67.93 -0.25 0.79 16 28 C -0.16 -0.95 9.47 37.16 0.35 -0.60 16 29 C -0.16 -1.04 9.47 37.15 0.35 -0.69 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.54 7.19 -51.93 -0.37 0.17 16 32 H 0.12 1.62 6.43 -51.93 -0.33 1.28 16 33 H 0.40 6.41 7.98 -40.82 -0.33 6.09 16 34 H 0.06 1.24 6.64 -51.93 -0.34 0.90 16 35 H 0.08 1.74 7.57 -51.93 -0.39 1.34 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.28 7.62 -51.93 -0.40 0.88 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 0.92 7.63 -51.93 -0.40 0.52 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.09 2.54 6.22 -51.93 -0.32 2.22 16 44 H 0.02 0.60 8.05 -51.93 -0.42 0.18 16 45 H 0.11 0.55 6.79 -51.93 -0.35 0.20 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 399.82 15.07 6.03 6.03 Total: -1.00 -34.05 399.82 -7.99 -42.05 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.25 Total: 4.83 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.64 Total: 3.67 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 0.83 Total: -63.25 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.05 -7.99 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099098302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.906 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds