Wall clock time and date at job start Wed Apr 1 2020 05:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36596 * 126.57819 * 2 1 4 4 C 1.47523 * 125.77025 * 0.02562 * 3 2 1 5 5 O 1.21597 * 119.99957 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99891 * 179.72231 * 4 3 2 7 7 C 1.46501 * 120.00097 * 180.27357 * 6 4 3 8 8 C 1.54316 * 111.69148 * 298.98445 * 7 6 4 9 9 C 1.55053 * 103.94249 * 262.78914 * 8 7 6 10 10 C 1.55058 * 102.10619 * 319.94695 * 9 8 7 11 11 C 1.54319 * 103.93709 * 40.05564 * 10 9 8 12 12 H 1.09001 * 111.01940 * 96.81171 * 11 10 9 13 13 C 1.53782 * 109.78984 * 221.68733 * 11 10 9 14 14 N 1.47223 * 106.37818 * 95.21716 * 13 11 10 15 15 C 1.36931 * 126.70630 * 211.28408 * 14 13 11 16 16 H 1.07998 * 119.99406 * 13.67518 * 15 14 13 17 17 C 1.38806 * 120.00338 * 193.66925 * 15 14 13 18 18 N 1.31619 * 120.00082 * 8.95379 * 17 15 14 19 19 Si 1.86799 * 120.00408 * 188.94693 * 17 15 14 20 20 H 1.48497 * 109.46875 * 94.98191 * 19 17 15 21 21 H 1.48500 * 109.47528 * 214.98581 * 19 17 15 22 22 H 1.48507 * 109.47046 * 334.98319 * 19 17 15 23 23 C 1.48675 * 107.08778 * 30.74249 * 14 13 11 24 24 N 1.34404 * 108.45839 * 180.26479 * 3 2 1 25 25 N 1.28768 * 109.51887 * 359.55202 * 24 3 2 26 26 N 1.34812 * 126.58094 * 180.02562 * 2 1 3 27 27 C 1.46503 * 126.59630 * 0.03224 * 26 2 1 28 28 C 1.52999 * 109.47015 * 119.99924 * 27 26 2 29 29 C 1.52992 * 109.47326 * 240.00469 * 27 26 2 30 30 H 1.09005 * 109.46885 * 90.02526 * 1 2 3 31 31 H 1.09000 * 109.46854 * 210.01865 * 1 2 3 32 32 H 1.08994 * 109.47375 * 330.02380 * 1 2 3 33 33 H 0.97003 * 120.00038 * 0.27363 * 6 4 3 34 34 H 1.09007 * 110.53595 * 21.40393 * 8 7 6 35 35 H 1.09004 * 110.53730 * 144.17290 * 8 7 6 36 36 H 1.09000 * 110.90393 * 78.14383 * 9 8 7 37 37 H 1.08998 * 110.90856 * 201.71014 * 9 8 7 38 38 H 1.09001 * 110.53611 * 158.66790 * 10 9 8 39 39 H 1.08999 * 110.53484 * 281.30104 * 10 9 8 40 40 H 1.08999 * 110.07702 * 214.44164 * 13 11 10 41 41 H 1.08991 * 110.07673 * 335.99242 * 13 11 10 42 42 H 0.96995 * 120.00713 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.90813 * 210.52782 * 23 14 13 44 44 H 1.09004 * 109.94877 * 88.52331 * 23 14 13 45 45 H 1.09000 * 109.46737 * 0.02562 * 27 26 2 46 46 H 1.08997 * 109.47329 * 300.00496 * 28 27 26 47 47 H 1.09000 * 109.46929 * 60.00655 * 28 27 26 48 48 H 1.09006 * 109.46850 * 180.02562 * 28 27 26 49 49 H 1.08997 * 109.47606 * 59.99702 * 29 27 26 50 50 H 1.09006 * 109.47527 * 180.02562 * 29 27 26 51 51 H 1.09000 * 109.47206 * 299.99705 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6859 2.7627 0.0006 6 7 2.7816 3.4988 0.0061 7 6 2.3374 4.8948 0.0127 8 6 1.5033 5.2338 -1.2405 9 6 2.5253 5.8927 -2.2026 10 6 3.3661 6.7658 -1.2355 11 6 3.5337 5.8785 0.0159 12 1 4.4890 5.3537 -0.0020 13 6 3.3565 6.7290 1.2847 14 7 1.9491 6.5809 1.6906 15 6 1.1777 7.5169 2.3260 16 1 1.5107 8.5428 2.3826 17 6 -0.0322 7.1474 2.8973 18 7 -0.3571 5.8750 2.9852 19 14 -1.1993 8.4559 3.5416 20 1 -2.1992 8.7861 2.4946 21 1 -1.8969 7.9458 4.7492 22 1 -0.4294 9.6762 3.8932 23 6 1.5133 5.2235 1.2687 24 7 3.5984 0.6789 -0.0059 25 7 3.6299 -0.6083 -0.0001 26 7 2.3105 -1.0826 -0.0005 27 6 1.8865 -2.4849 -0.0018 28 6 2.4298 -3.1808 -1.2513 29 6 2.4285 -3.1828 1.2471 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8901 0.5134 33 1 3.7292 3.2913 0.0058 34 1 1.0917 4.3266 -1.6829 35 1 0.7062 5.9344 -0.9913 36 1 3.1468 5.1386 -2.6856 37 1 2.0191 6.5102 -2.9444 38 1 4.3371 6.9956 -1.6742 39 1 2.8329 7.6835 -0.9875 40 1 4.0138 6.3647 2.0742 41 1 3.5752 7.7745 1.0679 42 1 -1.2023 5.6167 3.3847 43 1 0.4495 5.2127 1.0315 44 1 1.7286 4.5020 2.0569 45 1 0.7976 -2.5352 -0.0028 46 1 2.0436 -2.6836 -2.1411 47 1 3.5187 -3.1305 -1.2507 48 1 2.1139 -4.2241 -1.2525 49 1 2.0415 -2.6870 2.1373 50 1 2.1135 -4.2263 1.2460 51 1 3.5174 -3.1325 1.2478 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099098302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:15 Heat of formation + Delta-G solvation = 54.132329 kcal Electronic energy + Delta-G solvation = -32111.378152 eV Core-core repulsion = 28047.171477 eV Total energy + Delta-G solvation = -4064.206675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.33936 -41.43647 -39.36455 -37.36331 -36.12329 -34.77727 -33.94190 -33.43489 -32.05709 -30.72021 -29.73323 -28.63264 -28.27718 -26.30258 -26.24312 -24.99769 -24.18444 -22.39248 -22.11980 -21.34213 -20.59742 -20.14432 -18.87384 -18.52752 -17.64962 -17.21934 -17.01808 -16.45376 -16.14296 -15.63574 -15.49329 -15.40173 -15.25282 -15.09326 -14.91510 -14.65341 -14.38100 -14.14449 -14.02451 -13.99131 -13.63970 -13.24372 -13.19186 -13.00539 -12.94823 -12.82534 -12.68781 -12.53161 -12.42591 -12.35486 -12.09076 -12.00421 -11.97627 -11.92488 -11.64420 -11.61127 -11.54804 -11.42090 -11.14304 -10.88371 -10.65696 -10.24375 -9.89380 -8.84379 -7.84494 -5.22488 0.11657 0.64711 1.03973 1.44801 1.47739 1.56546 2.13347 2.32217 2.51057 3.15632 3.29218 3.34180 3.46571 3.56851 3.69410 3.77238 3.81188 3.85669 3.93887 3.97758 4.11296 4.42047 4.44849 4.48979 4.56276 4.58101 4.62880 4.63516 4.64948 4.68784 4.70859 4.75191 4.81289 4.85706 4.99302 5.00663 5.07715 5.14210 5.15792 5.17911 5.22355 5.28151 5.31853 5.42568 5.49499 5.56217 5.57558 5.70771 5.85390 6.21590 6.54759 6.92885 7.04390 7.29053 7.75305 8.47670 9.27155 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.003106 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.914121 B = 9013.198179 C =10184.402733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.128 3.872 3 C -0.127 4.127 4 C 0.597 3.403 5 O -0.552 6.552 6 N -0.691 5.691 7 C 0.156 3.844 8 C -0.108 4.108 9 C -0.111 4.111 10 C -0.104 4.104 11 C -0.097 4.097 12 H 0.108 0.892 13 C 0.133 3.867 14 N -0.618 5.618 15 C -0.240 4.240 16 H 0.084 0.916 17 C -0.066 4.066 18 N -0.945 5.945 19 Si 0.978 3.022 20 H -0.287 1.287 21 H -0.297 1.297 22 H -0.263 1.263 23 C 0.200 3.800 24 N -0.223 5.223 25 N -0.081 5.081 26 N -0.344 5.344 27 C 0.130 3.870 28 C -0.157 4.157 29 C -0.160 4.160 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.410 0.590 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.011 0.989 41 H 0.060 0.940 42 H 0.245 0.755 43 H 0.041 0.959 44 H -0.027 1.027 45 H 0.139 0.861 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.114 0.886 49 H 0.053 0.947 50 H 0.115 0.885 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -18.683 -11.918 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.011 4.011 3 C -0.267 4.267 4 C 0.382 3.618 5 O -0.429 6.429 6 N -0.342 5.342 7 C 0.069 3.931 8 C -0.146 4.146 9 C -0.149 4.149 10 C -0.141 4.141 11 C -0.117 4.117 12 H 0.126 0.874 13 C 0.008 3.992 14 N -0.343 5.343 15 C -0.369 4.369 16 H 0.102 0.898 17 C -0.260 4.260 18 N -0.593 5.593 19 Si 0.806 3.194 20 H -0.214 1.214 21 H -0.224 1.224 22 H -0.187 1.187 23 C 0.074 3.926 24 N -0.096 5.096 25 N -0.061 5.061 26 N -0.131 5.131 27 C 0.031 3.969 28 C -0.214 4.214 29 C -0.218 4.218 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.247 0.753 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.060 0.940 44 H -0.009 1.009 45 H 0.156 0.844 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.132 0.868 49 H 0.072 0.928 50 H 0.133 0.867 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.591 -18.895 -11.785 23.223 hybrid contribution -1.388 0.644 1.084 1.876 sum 5.203 -18.250 -10.700 21.786 Atomic orbital electron populations 1.20789 0.82975 1.05769 1.05652 1.22240 0.97259 0.86038 0.95517 1.21216 0.89812 0.95186 1.20497 1.17019 0.85554 0.83235 0.76000 1.90804 1.16927 1.83888 1.51279 1.45664 1.09852 1.04745 1.73918 1.21810 0.95410 0.79692 0.96233 1.22525 0.97599 0.99749 0.94769 1.22558 0.96742 0.98828 0.96739 1.22414 1.01042 0.97260 0.93391 1.22823 0.97001 0.95505 0.96368 0.87354 1.21553 0.85468 0.98473 0.93745 1.45048 1.07897 1.13748 1.67634 1.19415 1.00404 0.89725 1.27383 0.89818 1.25769 1.01122 0.98084 1.00994 1.70215 1.23205 1.15865 1.49979 0.85077 0.78854 0.78527 0.76986 1.21434 1.22351 1.18741 1.21203 0.96645 0.84710 0.90057 1.74548 1.19353 1.04905 1.10761 1.81752 0.98021 1.02779 1.23502 1.50920 1.05070 1.08359 1.48793 1.22220 1.02385 0.73056 0.99270 1.22150 1.02112 1.02425 0.94740 1.22174 1.02161 1.02511 0.94933 0.87397 0.87244 0.89719 0.75319 0.92353 0.93675 0.90085 0.90436 0.88456 0.92457 0.97114 0.92138 0.94602 0.94038 1.00942 0.84370 0.92239 0.92235 0.86794 0.92789 0.86687 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 9.41 71.24 0.67 -1.27 16 2 C 0.13 3.37 7.02 41.72 0.29 3.66 16 3 C -0.13 -4.23 6.99 40.82 0.29 -3.94 16 4 C 0.60 23.22 7.10 86.69 0.62 23.84 16 5 O -0.55 -24.73 12.63 -4.02 -0.05 -24.78 16 6 N -0.69 -25.48 5.19 -419.96 -2.18 -27.66 16 7 C 0.16 6.32 0.93 4.95 0.00 6.33 16 8 C -0.11 -4.16 5.50 31.74 0.17 -3.99 16 9 C -0.11 -3.16 6.92 32.00 0.22 -2.94 16 10 C -0.10 -2.96 6.25 31.75 0.20 -2.76 16 11 C -0.10 -3.32 3.63 -9.44 -0.03 -3.35 16 12 H 0.11 3.03 7.71 -2.39 -0.02 3.01 16 13 C 0.13 5.63 6.63 86.50 0.57 6.21 16 14 N -0.62 -33.45 3.42 -691.54 -2.36 -35.81 16 15 C -0.24 -14.00 10.28 84.03 0.86 -13.13 16 16 H 0.08 4.60 7.84 -2.91 -0.02 4.58 16 17 C -0.07 -3.95 5.39 84.86 0.46 -3.49 16 18 N -0.94 -60.86 10.82 21.65 0.23 -60.63 16 19 Si 0.98 47.66 29.56 68.60 2.03 49.69 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 21 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.20 10.84 3.67 86.22 0.32 11.15 16 24 N -0.22 -7.17 12.04 -49.99 -0.60 -7.78 16 25 N -0.08 -2.29 13.67 37.02 0.51 -1.78 16 26 N -0.34 -7.57 3.28 -313.39 -1.03 -8.60 16 27 C 0.13 1.52 3.68 44.99 0.17 1.69 16 28 C -0.16 -1.41 9.47 71.98 0.68 -0.73 16 29 C -0.16 -1.67 9.47 71.98 0.68 -0.99 16 30 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.11 1.38 7.19 -2.39 -0.02 1.37 16 32 H 0.08 2.44 6.43 -2.39 -0.02 2.42 16 33 H 0.41 13.14 7.98 -92.71 -0.74 12.40 16 34 H 0.06 2.30 6.64 -2.38 -0.02 2.28 16 35 H 0.04 2.04 7.57 -2.38 -0.02 2.02 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 1.86 7.62 -2.39 -0.02 1.84 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.06 2.37 7.63 -2.39 -0.02 2.35 16 42 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.04 2.60 6.22 -2.39 -0.01 2.59 16 44 H -0.03 -1.70 8.05 -2.38 -0.02 -1.72 16 45 H 0.14 0.85 6.79 -2.39 -0.02 0.83 16 46 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 49 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 51 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -81.75 399.82 2.92 -78.84 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.20 Total: 22.24 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.17 Total: 16.28 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -5.43 Total: -142.26 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -81.75 2.92 -78.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099098302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.971 kcal (2) G-P(sol) polarization free energy of solvation -81.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds