Wall clock time and date at job start Wed Apr 1 2020 04:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 110.05732 * 2 1 4 4 C 1.54265 * 110.03193 * 238.57996 * 2 1 3 5 5 C 1.54885 * 104.19733 * 264.32598 * 4 2 1 6 6 C 1.54890 * 102.75182 * 322.05705 * 5 4 2 7 7 C 1.53882 * 110.03009 * 121.41525 * 2 1 3 8 8 H 1.08998 * 110.02999 * 238.61537 * 7 2 1 9 9 C 1.50699 * 110.03530 * 0.02562 * 7 2 1 10 10 O 1.21282 * 119.99711 * 86.15772 * 9 7 2 11 11 N 1.34777 * 119.99971 * 266.16019 * 9 7 2 12 12 C 1.47574 * 134.49328 * 179.97438 * 11 9 7 13 13 C 1.53943 * 86.11732 * 155.35910 * 12 11 9 14 14 N 1.46500 * 113.74008 * 137.95208 * 13 12 11 15 15 C 1.35309 * 125.87347 * 276.92977 * 14 13 12 16 16 C 1.35347 * 106.17853 * 179.97438 * 15 14 13 17 17 C 1.50705 * 126.75009 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47019 * 94.99523 * 17 16 15 19 19 C 1.36937 * 119.99707 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99888 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00064 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99552 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46771 * 60.00402 * 23 21 19 25 25 H 1.48500 * 109.46724 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47104 * 300.00416 * 23 21 19 27 27 N 1.33763 * 106.49713 * 359.97438 * 16 15 14 28 28 N 1.28637 * 108.89005 * 359.97438 * 27 16 15 29 29 C 1.47814 * 134.45487 * 359.86498 * 11 9 7 30 30 H 1.09003 * 109.47120 * 296.36929 * 1 2 3 31 31 H 1.08997 * 109.47199 * 56.36651 * 1 2 3 32 32 H 1.09000 * 109.47680 * 176.36842 * 1 2 3 33 33 H 1.08999 * 109.46981 * 181.41617 * 3 2 1 34 34 H 1.08993 * 109.46700 * 301.41562 * 3 2 1 35 35 H 1.09005 * 109.46652 * 61.41572 * 3 2 1 36 36 H 1.09001 * 110.48456 * 23.00969 * 4 2 1 37 37 H 1.09005 * 110.48444 * 145.51470 * 4 2 1 38 38 H 1.08998 * 110.75457 * 80.37398 * 5 4 2 39 39 H 1.08997 * 110.75523 * 203.55759 * 5 4 2 40 40 H 1.08994 * 110.48486 * 279.26318 * 6 5 4 41 41 H 1.08998 * 110.48796 * 156.61786 * 6 5 4 42 42 H 1.09004 * 113.76978 * 41.06075 * 12 11 9 43 43 H 1.08997 * 113.88018 * 269.67781 * 12 11 9 44 44 H 1.09001 * 113.74699 * 269.16017 * 13 12 11 45 45 H 1.08006 * 126.91091 * 359.70852 * 15 14 13 46 46 H 1.09002 * 109.46739 * 214.99549 * 17 16 15 47 47 H 1.09000 * 109.47073 * 334.99500 * 17 16 15 48 48 H 0.96992 * 120.00337 * 0.02562 * 18 17 16 49 49 H 0.97007 * 119.99566 * 179.97438 * 22 21 19 50 50 H 1.09006 * 113.76577 * 90.38145 * 29 11 9 51 51 H 1.08994 * 113.83616 * 318.91995 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 2.3280 -2.1902 -0.7190 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7536 1.2338 8 1 2.6859 -0.0951 1.8329 9 6 0.9037 -1.2597 2.0613 10 8 0.3948 -2.3296 1.8019 11 7 0.4378 -0.5234 3.0895 12 6 -0.6402 -0.6985 4.0821 13 6 0.1724 0.2541 4.9776 14 7 -0.6465 1.2447 5.6808 15 6 -1.0840 2.4186 5.1696 16 6 -1.7991 3.0146 6.1521 17 6 -2.4974 4.3480 6.0771 18 7 -3.9020 4.1439 5.7137 19 6 -4.7393 5.2199 5.5859 20 1 -4.3642 6.2189 5.7525 21 6 -6.0700 5.0267 5.2411 22 7 -6.5269 3.8093 5.0376 23 14 -7.2124 6.4943 5.0673 24 1 -6.6961 7.4011 4.0107 25 1 -8.5707 6.0230 4.6955 26 1 -7.2788 7.2255 6.3581 27 7 -1.7652 2.1868 7.2022 28 7 -1.0752 1.1468 6.8906 29 6 0.8034 0.7829 3.6766 30 1 -0.3633 0.4565 0.9208 31 1 -0.3633 0.5692 -0.8556 32 1 -0.3634 -1.0256 -0.0651 33 1 3.1443 1.4262 -0.0254 34 1 1.6761 1.9621 -0.8770 35 1 1.7174 1.9471 0.9025 36 1 1.3061 -0.7696 -2.0254 37 1 2.9798 -0.2987 -1.5980 38 1 1.4030 -2.7651 -0.6751 39 1 3.0650 -2.6943 -1.3441 40 1 3.9439 -1.6768 0.6571 41 1 2.7400 -2.8197 1.3310 42 1 -0.7158 -1.7127 4.4743 43 1 -1.6010 -0.2921 3.7663 44 1 0.8791 -0.2553 5.6328 45 1 -0.8962 2.8046 4.1785 46 1 -2.4411 4.8426 7.0468 47 1 -2.0138 4.9696 5.3235 48 1 -4.2389 3.2468 5.5645 49 1 -7.4569 3.6742 4.7970 50 1 0.2681 1.6261 3.2398 51 1 1.8783 0.9495 3.7456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105303180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:00 Heat of formation + Delta-G solvation = 109.111084 kcal Electronic energy + Delta-G solvation = -30950.408589 eV Core-core repulsion = 26888.585972 eV Total energy + Delta-G solvation = -4061.822617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.14708 -41.28659 -39.49218 -37.47023 -35.01588 -33.54742 -32.62751 -31.86927 -30.56160 -29.96593 -28.75032 -27.71286 -26.98471 -25.89777 -25.13177 -23.93706 -22.84079 -21.69250 -21.00996 -20.69612 -19.95335 -18.69759 -17.99364 -17.62705 -17.04641 -16.51871 -16.12013 -15.57099 -15.50031 -14.92881 -14.75393 -14.50425 -14.20605 -13.89723 -13.78552 -13.74417 -13.54850 -13.34673 -13.26595 -13.16243 -12.74855 -12.64637 -12.39476 -12.18185 -12.02795 -11.79035 -11.73438 -11.50386 -11.32886 -11.30008 -11.07244 -10.92126 -10.91269 -10.87176 -10.80338 -10.53308 -10.14451 -10.05175 -9.91458 -9.74209 -9.27602 -8.92757 -8.87373 -6.93181 -5.74598 -3.04531 1.68685 1.90868 2.16271 2.62777 2.84945 3.45674 3.45893 3.50252 3.51449 3.68786 3.96666 4.08062 4.16740 4.27354 4.46319 4.60903 4.64016 4.70551 4.77454 4.80565 4.83760 4.91279 4.93339 5.04843 5.10001 5.14473 5.20780 5.22932 5.27944 5.32519 5.38296 5.43943 5.48249 5.53496 5.57627 5.60429 5.67701 5.71153 5.75817 5.84321 5.85952 5.94442 6.05488 6.15409 6.34797 6.61104 6.66073 6.74689 7.10629 7.69805 7.73484 8.42494 8.76728 9.54272 10.09543 10.45292 11.48000 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.002347 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.562383 B =11928.551435 C =13091.701290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.106 4.106 7 C -0.101 4.101 8 H 0.091 0.909 9 C 0.558 3.442 10 O -0.528 6.528 11 N -0.645 5.645 12 C 0.103 3.897 13 C 0.113 3.887 14 N -0.294 5.294 15 C -0.046 4.046 16 C 0.000 4.000 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 N -0.250 5.250 28 N -0.090 5.090 29 C 0.099 3.901 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.145 0.855 45 H 0.188 0.812 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.103 0.897 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.143 -9.931 -11.806 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.053 4.053 3 C -0.198 4.198 4 C -0.152 4.152 5 C -0.161 4.161 6 C -0.144 4.144 7 C -0.122 4.122 8 H 0.109 0.891 9 C 0.349 3.651 10 O -0.403 6.403 11 N -0.382 5.382 12 C -0.020 4.020 13 C 0.009 3.991 14 N -0.089 5.089 15 C -0.196 4.196 16 C -0.137 4.137 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 N -0.118 5.118 28 N -0.069 5.069 29 C -0.025 4.025 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.163 0.837 45 H 0.205 0.795 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.121 0.879 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 24.850 -11.364 -10.855 29.402 hybrid contribution -0.833 1.122 -1.113 1.787 sum 24.017 -10.241 -11.969 28.722 Atomic orbital electron populations 1.22125 0.93807 1.02949 1.02270 1.21079 0.96015 0.95120 0.93135 1.21959 1.00891 0.94603 1.02374 1.22501 1.00944 0.95276 0.96490 1.22487 1.01483 0.96759 0.95327 1.22258 0.98239 0.96698 0.97227 1.22093 0.94901 0.98959 0.96284 0.89099 1.20176 0.84075 0.83499 0.77390 1.90728 1.59978 1.22111 1.67448 1.49809 1.35535 1.20874 1.32004 1.23588 0.92559 1.01204 0.84687 1.23689 0.93546 0.89240 0.92596 1.47118 1.35986 1.14915 1.10893 1.23298 1.05013 0.88797 1.02511 1.22489 1.01013 1.00220 0.90020 1.18963 0.85646 0.86433 0.98671 1.42292 1.03583 1.07392 1.83784 1.19175 0.90674 0.87582 1.39791 0.90929 1.24761 0.97140 0.96494 1.02458 1.69670 1.15163 1.19254 1.53910 0.86238 0.80149 0.81723 0.77876 1.21236 1.21733 1.21160 1.75126 1.13189 0.98572 1.24911 1.78311 1.12633 1.19604 0.96306 1.23682 1.02582 0.87954 0.88270 0.92487 0.91928 0.91521 0.92248 0.91940 0.92501 0.91235 0.91229 0.90698 0.91446 0.90844 0.90738 0.88141 0.88310 0.83746 0.79532 0.94264 0.94457 0.78108 0.93436 0.87916 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 7.19 37.16 0.27 -1.09 16 2 C -0.05 -0.36 0.94 -153.39 -0.14 -0.51 16 3 C -0.14 -0.76 8.16 37.16 0.30 -0.46 16 4 C -0.11 -0.73 5.90 -25.07 -0.15 -0.88 16 5 C -0.12 -0.87 6.85 -24.74 -0.17 -1.04 16 6 C -0.11 -0.73 6.04 -25.07 -0.15 -0.88 16 7 C -0.10 -0.71 2.80 -90.65 -0.25 -0.97 16 8 H 0.09 0.47 7.14 -51.93 -0.37 0.10 16 9 C 0.56 5.47 4.84 -10.99 -0.05 5.42 16 10 O -0.53 -7.15 15.95 5.56 0.09 -7.06 16 11 N -0.64 -5.36 3.13 -178.35 -0.56 -5.92 16 12 C 0.10 0.95 8.64 -2.97 -0.03 0.93 16 13 C 0.11 0.92 5.14 -70.15 -0.36 0.56 16 14 N -0.29 -3.72 3.54 -56.30 -0.20 -3.92 16 15 C -0.05 -0.63 10.72 -17.05 -0.18 -0.81 16 16 C 0.00 0.00 6.62 -82.78 -0.55 -0.54 16 17 C 0.23 4.71 6.82 -5.19 -0.04 4.68 16 18 N -0.73 -18.65 5.59 -61.08 -0.34 -18.99 16 19 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 N -0.25 -4.91 12.41 33.29 0.41 -4.50 16 28 N -0.09 -1.50 13.17 60.35 0.79 -0.71 16 29 C 0.10 0.58 7.80 -2.83 -0.02 0.56 16 30 H 0.06 0.53 7.02 -51.93 -0.36 0.17 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.72 7.05 -51.93 -0.37 0.35 16 33 H 0.06 0.27 8.12 -51.93 -0.42 -0.16 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.46 7.84 -51.93 -0.41 0.05 16 37 H 0.07 0.37 7.83 -51.93 -0.41 -0.04 16 38 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.62 7.47 -51.93 -0.39 0.23 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.19 1.89 6.73 -52.48 -0.35 1.53 16 46 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.39 10.72 7.66 -40.82 -0.31 10.41 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.10 0.56 6.31 -51.93 -0.33 0.24 16 51 H 0.10 0.34 7.91 -51.93 -0.41 -0.07 16 LS Contribution 408.41 15.07 6.15 6.15 Total: -1.00 -35.62 408.41 -8.04 -43.66 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.32 Total: 4.14 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.77 Total: -2.37 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.83 Total: -61.87 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.09 Total: -7.06 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.62 -8.04 -43.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105303180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.769 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds