Wall clock time and date at job start Wed Apr 1 2020 04:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 110.05475 * 2 1 4 4 C 1.54266 * 110.03482 * 121.41930 * 2 1 3 5 5 C 1.54891 * 104.31343 * 142.96208 * 4 2 1 6 6 C 1.54892 * 102.74959 * 321.99283 * 5 4 2 7 7 H 1.09006 * 110.48300 * 279.26869 * 6 5 4 8 8 C 1.50695 * 110.48902 * 156.75634 * 6 5 4 9 9 O 1.21286 * 119.99601 * 241.45721 * 8 6 5 10 10 N 1.34774 * 120.00251 * 61.44946 * 8 6 5 11 11 C 1.47065 * 136.05633 * 359.63209 * 10 8 6 12 12 C 1.53755 * 87.88834 * 152.96174 * 11 10 8 13 13 N 1.46495 * 114.08783 * 139.78157 * 12 11 10 14 14 C 1.35322 * 125.86737 * 351.27313 * 13 12 11 15 15 C 1.35351 * 106.17478 * 179.90643 * 14 13 12 16 16 C 1.50694 * 126.75166 * 180.12671 * 15 14 13 17 17 N 1.46510 * 109.47160 * 95.24759 * 16 15 14 18 18 C 1.36939 * 119.99823 * 179.97438 * 17 16 15 19 19 H 1.07987 * 120.00211 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99313 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99632 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00183 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47029 * 90.00609 * 22 20 18 24 24 H 1.48498 * 109.46941 * 209.99956 * 22 20 18 25 25 H 1.48494 * 109.47527 * 329.99990 * 22 20 18 26 26 N 1.33778 * 106.49751 * 0.35299 * 15 14 13 27 27 N 1.28636 * 108.88230 * 359.77663 * 26 15 14 28 28 C 1.47069 * 136.05763 * 180.02562 * 10 8 6 29 29 C 1.54224 * 110.14449 * 238.44444 * 2 1 3 30 30 H 1.09000 * 109.47475 * 300.03372 * 1 2 3 31 31 H 1.09005 * 109.47721 * 60.03717 * 1 2 3 32 32 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47243 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47243 * 299.96544 * 3 2 1 35 35 H 1.09005 * 109.46625 * 59.96800 * 3 2 1 36 36 H 1.09002 * 110.48609 * 24.21622 * 4 2 1 37 37 H 1.08998 * 110.48769 * 261.70715 * 4 2 1 38 38 H 1.09000 * 110.75322 * 80.30558 * 5 4 2 39 39 H 1.09002 * 110.75336 * 203.49108 * 5 4 2 40 40 H 1.08996 * 113.47151 * 267.69549 * 11 10 8 41 41 H 1.09005 * 113.46895 * 38.13578 * 11 10 8 42 42 H 1.08998 * 114.57469 * 272.66378 * 12 11 10 43 43 H 1.08000 * 126.91243 * 0.02562 * 14 13 12 44 44 H 1.08998 * 109.47541 * 215.24440 * 16 15 14 45 45 H 1.09001 * 109.47608 * 335.24989 * 16 15 14 46 46 H 0.96996 * 119.99483 * 0.02562 * 17 16 15 47 47 H 0.97000 * 120.00088 * 180.02562 * 21 20 18 48 48 H 1.08995 * 113.46671 * 321.86709 * 28 10 8 49 49 H 1.09001 * 113.46789 * 92.30712 * 28 10 8 50 50 H 1.09009 * 110.00234 * 121.44260 * 29 2 1 51 51 H 1.08998 * 110.06034 * 0.06042 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0584 -0.7555 1.2368 5 6 3.3151 -1.5006 0.7223 6 6 2.8916 -1.9432 -0.7003 7 1 2.2819 -2.8456 -0.6534 8 6 4.1047 -2.1722 -1.5645 9 8 4.2714 -1.5062 -2.5643 10 7 5.0044 -3.1170 -1.2263 11 6 5.1594 -4.0888 -0.1335 12 6 5.9629 -4.9682 -1.1056 13 7 7.1310 -5.6138 -0.5017 14 6 7.6229 -5.3666 0.7345 15 6 8.6962 -6.1779 0.8824 16 6 9.5889 -6.2806 2.0921 17 7 9.1340 -7.3837 2.9424 18 6 9.7971 -7.6696 4.1059 19 1 10.6550 -7.0818 4.3970 20 6 9.3664 -8.7150 4.9112 21 7 10.0034 -8.9896 6.0298 22 14 7.8820 -9.7313 4.4080 23 1 8.3269 -10.8810 3.5802 24 1 7.1915 -10.2340 5.6228 25 1 6.9476 -8.8869 3.6212 26 7 8.8117 -6.8669 -0.2584 27 7 7.8693 -6.5096 -1.0578 28 6 6.2669 -3.6250 -1.7841 29 6 2.0610 -0.7577 -1.2338 30 1 -0.3634 0.5143 0.8897 31 1 -0.3635 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 3.1446 1.4262 0.0005 34 1 1.6970 1.9546 -0.8903 35 1 1.6960 1.9549 0.8898 36 1 1.3142 -1.4661 1.5966 37 1 2.3275 -0.0538 2.0263 38 1 4.1719 -0.8282 0.6786 39 1 3.5356 -2.3646 1.3492 40 1 5.7506 -3.7126 0.7014 41 1 4.2185 -4.5383 0.1843 42 1 5.3589 -5.6468 -1.7079 43 1 7.2357 -4.6647 1.4582 44 1 10.6140 -6.4673 1.7725 45 1 9.5478 -5.3477 2.6544 46 1 8.3637 -7.9118 2.6807 47 1 9.7027 -9.7203 6.5923 48 1 6.2697 -3.6792 -2.8727 49 1 7.1499 -3.1266 -1.3840 50 1 2.6911 -0.0999 -1.8326 51 1 1.2286 -1.1250 -1.8339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105324151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:34 Heat of formation + Delta-G solvation = 111.873777 kcal Electronic energy + Delta-G solvation = -30195.738617 eV Core-core repulsion = 26134.035799 eV Total energy + Delta-G solvation = -4061.702818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.31320 -41.20088 -39.63973 -38.02309 -35.25412 -33.76754 -32.96577 -31.95408 -30.40764 -29.84186 -29.25281 -27.76192 -27.03516 -26.28960 -25.32655 -24.08674 -22.48484 -22.16634 -21.13570 -20.75519 -19.50881 -19.14437 -18.20370 -17.81863 -17.44559 -16.63249 -16.28435 -15.88109 -15.41665 -14.91999 -14.74144 -14.60011 -14.38538 -14.29222 -14.09171 -13.77926 -13.65793 -13.46710 -13.36961 -13.24070 -12.92888 -12.73507 -12.59487 -12.20151 -12.13958 -11.99522 -11.88682 -11.68000 -11.53195 -11.24539 -11.17121 -11.04807 -11.02213 -10.93349 -10.90151 -10.67377 -10.28459 -10.19859 -10.03868 -9.61396 -9.45358 -9.10423 -8.92367 -7.26165 -5.77813 -3.13843 1.53885 1.74622 2.01703 2.52248 2.67796 3.26350 3.36952 3.42456 3.45936 3.58278 3.89955 3.95574 4.08574 4.20629 4.33308 4.49616 4.59170 4.60407 4.65269 4.67389 4.70204 4.77855 4.90788 4.94372 4.98366 5.01725 5.04452 5.07768 5.16604 5.21118 5.28930 5.31786 5.32461 5.43389 5.50718 5.52328 5.52524 5.61000 5.62489 5.69436 5.72732 5.79111 5.89223 5.97414 6.18111 6.50284 6.51393 6.62624 6.99029 7.55935 7.96403 8.40698 8.60963 9.18565 9.91012 10.10782 11.40218 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.002145 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.821739 B =13049.374873 C =14336.959164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.107 4.107 7 H 0.103 0.897 8 C 0.558 3.442 9 O -0.528 6.528 10 N -0.643 5.643 11 C 0.097 3.903 12 C 0.110 3.890 13 N -0.292 5.292 14 C -0.046 4.046 15 C -0.006 4.006 16 C 0.237 3.763 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.094 0.906 20 C 0.007 3.993 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.280 1.280 26 N -0.251 5.251 27 N -0.088 5.088 28 C 0.099 3.901 29 C -0.103 4.103 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.149 0.851 43 H 0.191 0.809 44 H 0.049 0.951 45 H 0.047 0.953 46 H 0.362 0.638 47 H 0.260 0.740 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.085 0.915 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.895 20.306 -14.182 32.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.128 4.128 7 H 0.121 0.879 8 C 0.349 3.651 9 O -0.403 6.403 10 N -0.380 5.380 11 C -0.027 4.027 12 C 0.006 3.994 13 N -0.087 5.087 14 C -0.195 4.195 15 C -0.144 4.144 16 C 0.108 3.892 17 N -0.396 5.396 18 C -0.374 4.374 19 H 0.111 0.889 20 C -0.189 4.189 21 N -0.580 5.580 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.206 1.206 26 N -0.118 5.118 27 N -0.066 5.066 28 C -0.025 4.025 29 C -0.141 4.141 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.167 0.833 43 H 0.208 0.792 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.195 0.805 47 H 0.070 0.930 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.103 0.897 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.591 20.029 -15.886 32.826 hybrid contribution -1.309 -0.250 0.684 1.498 sum -21.900 19.779 -15.203 33.196 Atomic orbital electron populations 1.21916 0.94163 1.01789 1.01825 1.21253 0.95570 0.95611 0.94647 1.21910 1.01048 0.94932 1.01730 1.22492 0.96642 0.98985 0.97084 1.22504 0.98779 1.00579 0.93332 1.22131 0.93962 1.01216 0.95525 0.87901 1.20221 0.82890 0.76582 0.85439 1.90735 1.76578 1.45751 1.27263 1.49258 1.23415 1.37411 1.27940 1.23485 1.01110 0.86405 0.91740 1.23461 0.85052 0.93656 0.97221 1.47044 1.21735 1.28127 1.11761 1.23378 0.99559 1.06985 0.89624 1.22553 0.98338 0.96508 0.97000 1.18935 0.93735 0.92518 0.83999 1.42646 1.35843 1.36686 1.24378 1.19033 1.10020 1.12831 0.95482 0.88871 1.24640 0.98856 0.98654 0.96767 1.69695 1.42013 1.32441 1.13843 0.86545 0.83657 0.80930 0.77344 1.20961 1.21738 1.20601 1.75152 1.14741 1.20539 1.01381 1.78329 1.01407 1.05001 1.21880 1.23380 0.87997 0.89267 1.01815 1.22306 0.99058 0.95529 0.97163 0.92556 0.92593 0.92528 0.92554 0.92566 0.92590 0.91020 0.90994 0.90942 0.90666 0.87814 0.88025 0.83321 0.79248 0.93353 0.93550 0.80491 0.93010 0.88457 0.88560 0.89679 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.17 37.15 0.30 -0.35 16 2 C -0.07 -0.38 0.95 -153.21 -0.14 -0.53 16 3 C -0.14 -0.78 8.16 37.16 0.30 -0.47 16 4 C -0.11 -0.56 5.89 -25.07 -0.15 -0.71 16 5 C -0.11 -0.59 5.89 -24.74 -0.15 -0.74 16 6 C -0.11 -0.66 3.11 -90.12 -0.28 -0.94 16 7 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 8 C 0.56 4.94 7.40 -10.99 -0.08 4.86 16 9 O -0.53 -6.75 16.24 5.55 0.09 -6.66 16 10 N -0.64 -4.58 3.66 -185.05 -0.68 -5.26 16 11 C 0.10 0.50 6.97 -8.37 -0.06 0.44 16 12 C 0.11 0.80 5.35 -67.67 -0.36 0.43 16 13 N -0.29 -3.38 3.56 -54.43 -0.19 -3.58 16 14 C -0.05 -0.56 10.71 -17.04 -0.18 -0.75 16 15 C -0.01 -0.11 6.61 -82.78 -0.55 -0.66 16 16 C 0.24 4.53 6.82 -5.19 -0.04 4.49 16 17 N -0.75 -17.80 5.40 -61.08 -0.33 -18.13 16 18 C -0.24 -6.82 10.48 -15.06 -0.16 -6.97 16 19 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -29.01 13.97 55.49 0.78 -28.23 16 22 Si 0.88 22.24 27.73 -169.99 -4.71 17.53 16 23 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 26 N -0.25 -4.59 12.41 33.29 0.41 -4.18 16 27 N -0.09 -1.37 13.16 60.35 0.79 -0.57 16 28 C 0.10 0.73 8.42 -8.49 -0.07 0.66 16 29 C -0.10 -0.68 5.48 -25.43 -0.14 -0.82 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.32 7.85 -51.93 -0.41 -0.09 16 37 H 0.07 0.34 7.84 -51.93 -0.41 -0.06 16 38 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 39 H 0.07 0.31 7.73 -51.93 -0.40 -0.09 16 40 H 0.10 0.45 6.38 -51.93 -0.33 0.12 16 41 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.15 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.19 1.64 6.77 -52.49 -0.36 1.28 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.36 8.68 5.52 -40.82 -0.23 8.45 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.74 6.45 -51.92 -0.33 0.40 16 51 H 0.07 0.44 7.69 -51.93 -0.40 0.04 16 LS Contribution 409.26 15.07 6.17 6.17 Total: -1.00 -36.03 409.26 -7.89 -43.91 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.37 Total: 0.94 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.84 Total: -1.94 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.78 Total: -59.95 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: 0.09 Total: -6.66 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.03 -7.89 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105324151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.788 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds