Wall clock time and date at job start Wed Apr 1 2020 05:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33326 * 126.81688 * 2 1 4 4 N 1.28513 * 109.44148 * 180.28173 * 3 2 1 5 5 N 1.28718 * 110.63633 * 359.73135 * 4 3 2 6 6 H 0.97001 * 126.03413 * 179.97438 * 5 4 3 7 7 C 1.37008 * 126.81579 * 179.82694 * 2 1 3 8 8 C 1.47235 * 127.18538 * 359.97438 * 7 2 1 9 9 O 1.21621 * 120.00202 * 26.83863 * 8 7 2 10 10 N 1.34776 * 119.99897 * 206.84032 * 8 7 2 11 11 C 1.46962 * 120.65532 * 6.52752 * 10 8 7 12 12 C 1.53192 * 108.88891 * 126.46052 * 11 10 8 13 13 C 1.53042 * 109.31094 * 54.55965 * 12 11 10 14 14 C 1.53040 * 109.53694 * 298.63227 * 13 12 11 15 15 C 1.46931 * 120.63068 * 186.33985 * 10 8 7 16 16 H 1.09007 * 109.58172 * 113.68325 * 15 10 8 17 17 C 1.52994 * 109.58724 * 353.40194 * 15 10 8 18 18 C 1.53012 * 112.84897 * 294.29688 * 17 15 10 19 19 N 1.46497 * 109.46899 * 170.37630 * 18 17 15 20 20 C 1.36937 * 119.99514 * 180.27580 * 19 18 17 21 21 H 1.08002 * 120.00107 * 359.72426 * 20 19 18 22 22 C 1.38814 * 119.99867 * 179.72597 * 20 19 18 23 23 N 1.31620 * 120.00092 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99865 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47260 * 90.00607 * 24 22 20 26 26 H 1.48501 * 109.46931 * 210.00151 * 24 22 20 27 27 H 1.48501 * 109.47218 * 330.00166 * 24 22 20 28 28 C 1.53782 * 113.61537 * 65.49172 * 17 15 10 29 29 C 1.53951 * 87.01809 * 89.23264 * 28 17 15 30 30 C 1.53778 * 113.61674 * 163.10384 * 17 15 10 31 31 H 1.09004 * 109.47126 * 270.17806 * 1 2 3 32 32 H 1.09001 * 109.47317 * 30.17049 * 1 2 3 33 33 H 1.08994 * 109.47796 * 150.17779 * 1 2 3 34 34 H 1.09008 * 109.59362 * 6.60496 * 11 10 8 35 35 H 1.09001 * 109.58407 * 246.31735 * 11 10 8 36 36 H 1.08997 * 109.50137 * 294.60542 * 12 11 10 37 37 H 1.09006 * 109.49706 * 174.51123 * 12 11 10 38 38 H 1.08998 * 109.45678 * 178.61126 * 13 12 11 39 39 H 1.08996 * 109.45238 * 58.65088 * 13 12 11 40 40 H 1.09002 * 109.49912 * 301.41217 * 14 13 12 41 41 H 1.09003 * 109.52046 * 181.33531 * 14 13 12 42 42 H 1.09003 * 109.46698 * 50.37613 * 18 17 15 43 43 H 1.09000 * 109.46651 * 290.37912 * 18 17 15 44 44 H 0.97002 * 120.00509 * 0.02562 * 19 18 17 45 45 H 0.96999 * 120.00270 * 179.97438 * 23 22 20 46 46 H 1.09007 * 113.61083 * 203.74790 * 28 17 15 47 47 H 1.08990 * 113.61256 * 334.65068 * 28 17 15 48 48 H 1.08996 * 113.53540 * 270.81161 * 29 28 17 49 49 H 1.08998 * 113.74223 * 139.94244 * 29 28 17 50 50 H 1.08998 * 113.61261 * 25.34094 * 30 17 15 51 51 H 1.09001 * 113.61760 * 156.24922 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6836 -0.0060 5 7 3.6056 -0.6015 -0.0044 6 1 4.4212 -1.1266 -0.0083 7 6 2.3279 -1.0968 0.0033 8 6 1.9221 -2.5121 0.0081 9 8 0.8509 -2.8393 -0.4659 10 7 2.7377 -3.4452 0.5379 11 6 3.9674 -3.0535 1.2409 12 6 3.9703 -3.6972 2.6311 13 6 3.7820 -5.2093 2.4890 14 6 2.4328 -5.4970 1.8264 15 6 2.4124 -4.8738 0.4272 16 1 3.1504 -5.3687 -0.2041 17 6 1.0205 -5.0367 -0.1867 18 6 -0.0927 -4.4956 0.7129 19 7 -1.3550 -4.4761 -0.0304 20 6 -2.4976 -4.0224 0.5728 21 1 -2.4691 -3.6832 1.5977 22 6 -3.6925 -3.9986 -0.1333 23 7 -4.7909 -3.5630 0.4466 24 14 -3.7417 -4.5847 -1.9062 25 1 -4.0392 -6.0393 -1.9386 26 1 -4.7993 -3.8467 -2.6424 27 1 -2.4257 -4.3342 -2.5471 28 6 0.9282 -4.5490 -1.6422 29 6 1.3356 -5.9734 -2.0608 30 6 0.7457 -6.4514 -0.7234 31 1 -0.3633 0.0032 1.0277 32 1 -0.3634 0.8884 -0.5165 33 1 -0.3634 -0.8915 -0.5110 34 1 4.0017 -1.9686 1.3406 35 1 4.8353 -3.3964 0.6776 36 1 3.1557 -3.2834 3.2254 37 1 4.9209 -3.4937 3.1242 38 1 3.8084 -5.6727 3.4752 39 1 4.5833 -5.6187 1.8740 40 1 1.6326 -5.0663 2.4283 41 1 2.2885 -6.5745 1.7469 42 1 0.1572 -3.4835 1.0312 43 1 -0.1962 -5.1367 1.5883 44 1 -1.3807 -4.7812 -0.9508 45 1 -5.6259 -3.5460 -0.0469 46 1 -0.0820 -4.2761 -1.9479 47 1 1.6679 -3.7898 -1.8959 48 1 2.4139 -6.1129 -2.1371 49 1 0.7978 -6.3452 -2.9329 50 1 1.3385 -7.2258 -0.2367 51 1 -0.3143 -6.6996 -0.7776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105551579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:04 Heat of formation + Delta-G solvation = 161.706045 kcal Electronic energy + Delta-G solvation = -34109.902094 eV Core-core repulsion = 30050.360165 eV Total energy + Delta-G solvation = -4059.541929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.49538 -41.46891 -38.09109 -37.65541 -34.30300 -33.98570 -33.07297 -32.32608 -31.37619 -30.95274 -28.02808 -27.24834 -25.68012 -25.54702 -24.11846 -23.61583 -22.85930 -21.92611 -21.71621 -20.79348 -20.05730 -18.40518 -17.78175 -17.25703 -16.87545 -16.49058 -16.28736 -15.45211 -15.04442 -14.85346 -14.51832 -14.41728 -14.31370 -13.95973 -13.66609 -13.56147 -13.46157 -12.94219 -12.84090 -12.63000 -12.55198 -12.29821 -12.15342 -11.87836 -11.82801 -11.59174 -11.36622 -11.15233 -11.09651 -10.97447 -10.90593 -10.78148 -10.65806 -10.42881 -10.15668 -10.09230 -9.75769 -9.51745 -9.41288 -9.16938 -9.14158 -8.72428 -8.44692 -6.94437 -5.63088 -2.93424 0.90394 2.21443 2.31755 2.63289 3.06518 3.45701 3.49266 3.53626 4.06801 4.27515 4.37648 4.51975 4.59596 4.71528 4.71799 4.77678 4.91157 4.95891 4.97597 5.07404 5.09436 5.12267 5.27571 5.31367 5.42094 5.51403 5.60197 5.65328 5.69544 5.81139 5.81554 5.84889 5.89106 5.95281 6.01218 6.10902 6.17404 6.17606 6.22478 6.30030 6.38820 6.46030 6.50238 6.59478 6.63057 6.90743 6.96921 7.07005 7.19174 8.08764 8.16034 8.23350 8.57398 9.39128 10.12701 10.34827 11.56319 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009830 B = 0.005284 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.768398 B = 5298.230108 C = 6888.646977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.060 3.940 3 N -0.269 5.269 4 N -0.061 5.061 5 N -0.385 5.385 6 H 0.448 0.552 7 C -0.060 4.060 8 C 0.554 3.446 9 O -0.424 6.424 10 N -0.605 5.605 11 C 0.095 3.905 12 C -0.133 4.133 13 C -0.118 4.118 14 C -0.136 4.136 15 C 0.183 3.817 16 H 0.074 0.926 17 C -0.080 4.080 18 C 0.190 3.810 19 N -0.743 5.743 20 C -0.225 4.225 21 H 0.085 0.915 22 C 0.001 3.999 23 N -0.940 5.940 24 Si 0.878 3.122 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.276 1.276 28 C -0.083 4.083 29 C -0.167 4.167 30 C -0.130 4.130 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.007 0.993 44 H 0.360 0.640 45 H 0.256 0.744 46 H 0.094 0.906 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.800 -1.945 1.020 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 N -0.136 5.136 4 N -0.042 5.042 5 N -0.115 5.115 6 H 0.297 0.703 7 C -0.193 4.193 8 C 0.338 3.662 9 O -0.293 6.293 10 N -0.342 5.342 11 C -0.029 4.029 12 C -0.172 4.172 13 C -0.155 4.155 14 C -0.174 4.174 15 C 0.080 3.920 16 H 0.092 0.908 17 C -0.081 4.081 18 C 0.063 3.937 19 N -0.390 5.390 20 C -0.355 4.355 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.589 5.589 24 Si 0.709 3.291 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.202 1.202 28 C -0.120 4.120 29 C -0.204 4.204 30 C -0.168 4.168 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.195 0.805 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 23.702 -0.654 0.895 23.728 hybrid contribution 0.073 -1.605 -1.152 1.977 sum 23.776 -2.259 -0.258 23.884 Atomic orbital electron populations 1.20409 0.84167 1.05312 1.04206 1.22436 0.98785 0.86752 0.99884 1.74927 0.95123 1.26214 1.17367 1.78130 1.16301 0.92523 1.17284 1.45975 1.08820 1.06974 1.49756 0.70295 1.22280 0.84548 0.96972 1.15494 1.16793 0.85348 0.81899 0.82110 1.91248 1.19608 1.77239 1.41167 1.47786 1.23419 1.06458 1.56508 1.21979 0.87196 0.99679 0.94029 1.21886 1.02806 0.96582 0.95879 1.21510 0.97619 0.95230 1.01172 1.22042 0.97930 1.01476 0.95962 1.20980 0.96183 0.78629 0.96194 0.90829 1.22185 0.93320 0.95871 0.96695 1.20619 0.84354 0.97053 0.91691 1.42706 1.04917 1.78690 1.12649 1.19030 0.85162 1.33731 0.97615 0.89669 1.24585 0.95607 1.01915 0.97295 1.69694 0.99188 1.53683 1.36371 0.86645 0.76965 0.78383 0.87124 1.21474 1.22005 1.20237 1.22982 1.02557 0.92778 0.93714 1.23207 0.99605 1.00008 0.97613 1.23003 1.01886 0.95779 0.96165 0.89892 0.90380 0.87666 0.90701 0.90992 0.90918 0.90675 0.91393 0.91941 0.90199 0.90388 0.94049 0.97542 0.80527 0.93367 0.88800 0.92668 0.91429 0.92212 0.92318 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.20 36.00 0.37 -0.90 16 2 C 0.06 0.91 7.29 -82.39 -0.60 0.30 16 3 N -0.27 -4.10 12.35 33.51 0.41 -3.68 16 4 N -0.06 -0.80 13.35 60.35 0.81 0.00 16 5 N -0.39 -3.96 5.72 33.31 0.19 -3.77 16 6 H 0.45 2.83 6.81 -190.33 -1.30 1.54 16 7 C -0.06 -0.78 6.37 -82.33 -0.52 -1.30 16 8 C 0.55 7.54 5.71 -12.61 -0.07 7.47 16 9 O -0.42 -7.23 6.20 5.26 0.03 -7.20 16 10 N -0.61 -6.40 2.97 -166.52 -0.49 -6.90 16 11 C 0.09 0.67 5.41 -3.69 -0.02 0.65 16 12 C -0.13 -0.91 6.08 -26.61 -0.16 -1.08 16 13 C -0.12 -0.85 5.88 -26.69 -0.16 -1.01 16 14 C -0.14 -1.36 5.04 -26.61 -0.13 -1.49 16 15 C 0.18 2.04 2.29 -67.60 -0.15 1.88 16 16 H 0.07 0.73 7.33 -51.93 -0.38 0.35 16 17 C -0.08 -1.19 0.26 -153.69 -0.04 -1.23 16 18 C 0.19 3.67 3.95 -4.04 -0.02 3.65 16 19 N -0.74 -17.64 4.46 -59.90 -0.27 -17.91 16 20 C -0.23 -6.39 10.47 -15.06 -0.16 -6.55 16 21 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 22 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 23 N -0.94 -29.92 13.97 55.49 0.78 -29.15 16 24 Si 0.88 22.68 27.73 -169.99 -4.71 17.96 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 27 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 28 C -0.08 -1.32 4.49 -25.83 -0.12 -1.44 16 29 C -0.17 -2.25 7.74 -25.83 -0.20 -2.45 16 30 C -0.13 -1.88 6.92 -25.92 -0.18 -2.06 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.85 6.53 -51.93 -0.34 1.51 16 34 H 0.07 0.51 4.42 -51.92 -0.23 0.28 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.98 6.55 -51.93 -0.34 0.64 16 41 H 0.08 0.74 7.74 -51.93 -0.40 0.34 16 42 H 0.04 0.86 5.26 -52.27 -0.28 0.58 16 43 H 0.01 0.14 7.13 -51.93 -0.37 -0.23 16 44 H 0.36 8.51 2.84 -40.82 -0.12 8.39 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 46 H 0.09 1.86 5.86 -51.92 -0.30 1.56 16 47 H 0.05 0.86 6.16 -51.93 -0.32 0.54 16 48 H 0.07 0.77 7.62 -51.93 -0.40 0.38 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.06 0.71 7.70 -51.93 -0.40 0.31 16 51 H 0.09 1.54 7.33 -51.93 -0.38 1.16 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -33.93 371.87 -8.44 -42.37 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.52 Total: 8.29 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.26 Total: -5.63 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 1.42 Total: -61.40 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.03 Total: -7.20 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.93 -8.44 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105551579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.079 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds