Wall clock time and date at job start Wed Apr 1 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33326 * 126.81688 * 2 1 4 4 N 1.28513 * 109.44148 * 180.28173 * 3 2 1 5 5 N 1.28718 * 110.63633 * 359.73135 * 4 3 2 6 6 H 0.97001 * 126.03413 * 179.97438 * 5 4 3 7 7 C 1.37008 * 126.81579 * 179.82694 * 2 1 3 8 8 C 1.47235 * 127.18538 * 359.97438 * 7 2 1 9 9 O 1.21621 * 120.00202 * 26.83863 * 8 7 2 10 10 N 1.34776 * 119.99897 * 206.84032 * 8 7 2 11 11 C 1.46962 * 120.65532 * 6.52752 * 10 8 7 12 12 C 1.53192 * 108.88891 * 126.46052 * 11 10 8 13 13 C 1.53042 * 109.31094 * 54.55965 * 12 11 10 14 14 C 1.53040 * 109.53694 * 298.63227 * 13 12 11 15 15 C 1.46931 * 120.63068 * 186.33985 * 10 8 7 16 16 H 1.09007 * 109.58172 * 113.68325 * 15 10 8 17 17 C 1.52994 * 109.58724 * 353.40194 * 15 10 8 18 18 C 1.53012 * 112.84897 * 294.29688 * 17 15 10 19 19 N 1.46497 * 109.46899 * 170.37630 * 18 17 15 20 20 C 1.36937 * 119.99514 * 180.27580 * 19 18 17 21 21 H 1.08002 * 120.00107 * 359.72426 * 20 19 18 22 22 C 1.38814 * 119.99867 * 179.72597 * 20 19 18 23 23 N 1.31620 * 120.00092 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99865 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47260 * 90.00607 * 24 22 20 26 26 H 1.48501 * 109.46931 * 210.00151 * 24 22 20 27 27 H 1.48501 * 109.47218 * 330.00166 * 24 22 20 28 28 C 1.53782 * 113.61537 * 65.49172 * 17 15 10 29 29 C 1.53951 * 87.01809 * 89.23264 * 28 17 15 30 30 C 1.53778 * 113.61674 * 163.10384 * 17 15 10 31 31 H 1.09004 * 109.47126 * 270.17806 * 1 2 3 32 32 H 1.09001 * 109.47317 * 30.17049 * 1 2 3 33 33 H 1.08994 * 109.47796 * 150.17779 * 1 2 3 34 34 H 1.09008 * 109.59362 * 6.60496 * 11 10 8 35 35 H 1.09001 * 109.58407 * 246.31735 * 11 10 8 36 36 H 1.08997 * 109.50137 * 294.60542 * 12 11 10 37 37 H 1.09006 * 109.49706 * 174.51123 * 12 11 10 38 38 H 1.08998 * 109.45678 * 178.61126 * 13 12 11 39 39 H 1.08996 * 109.45238 * 58.65088 * 13 12 11 40 40 H 1.09002 * 109.49912 * 301.41217 * 14 13 12 41 41 H 1.09003 * 109.52046 * 181.33531 * 14 13 12 42 42 H 1.09003 * 109.46698 * 50.37613 * 18 17 15 43 43 H 1.09000 * 109.46651 * 290.37912 * 18 17 15 44 44 H 0.97002 * 120.00509 * 0.02562 * 19 18 17 45 45 H 0.96999 * 120.00270 * 179.97438 * 23 22 20 46 46 H 1.09007 * 113.61083 * 203.74790 * 28 17 15 47 47 H 1.08990 * 113.61256 * 334.65068 * 28 17 15 48 48 H 1.08996 * 113.53540 * 270.81161 * 29 28 17 49 49 H 1.08998 * 113.74223 * 139.94244 * 29 28 17 50 50 H 1.08998 * 113.61261 * 25.34094 * 30 17 15 51 51 H 1.09001 * 113.61760 * 156.24922 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6836 -0.0060 5 7 3.6056 -0.6015 -0.0044 6 1 4.4212 -1.1266 -0.0083 7 6 2.3279 -1.0968 0.0033 8 6 1.9221 -2.5121 0.0081 9 8 0.8509 -2.8393 -0.4659 10 7 2.7377 -3.4452 0.5379 11 6 3.9674 -3.0535 1.2409 12 6 3.9703 -3.6972 2.6311 13 6 3.7820 -5.2093 2.4890 14 6 2.4328 -5.4970 1.8264 15 6 2.4124 -4.8738 0.4272 16 1 3.1504 -5.3687 -0.2041 17 6 1.0205 -5.0367 -0.1867 18 6 -0.0927 -4.4956 0.7129 19 7 -1.3550 -4.4761 -0.0304 20 6 -2.4976 -4.0224 0.5728 21 1 -2.4691 -3.6832 1.5977 22 6 -3.6925 -3.9986 -0.1333 23 7 -4.7909 -3.5630 0.4466 24 14 -3.7417 -4.5847 -1.9062 25 1 -4.0392 -6.0393 -1.9386 26 1 -4.7993 -3.8467 -2.6424 27 1 -2.4257 -4.3342 -2.5471 28 6 0.9282 -4.5490 -1.6422 29 6 1.3356 -5.9734 -2.0608 30 6 0.7457 -6.4514 -0.7234 31 1 -0.3633 0.0032 1.0277 32 1 -0.3634 0.8884 -0.5165 33 1 -0.3634 -0.8915 -0.5110 34 1 4.0017 -1.9686 1.3406 35 1 4.8353 -3.3964 0.6776 36 1 3.1557 -3.2834 3.2254 37 1 4.9209 -3.4937 3.1242 38 1 3.8084 -5.6727 3.4752 39 1 4.5833 -5.6187 1.8740 40 1 1.6326 -5.0663 2.4283 41 1 2.2885 -6.5745 1.7469 42 1 0.1572 -3.4835 1.0312 43 1 -0.1962 -5.1367 1.5883 44 1 -1.3807 -4.7812 -0.9508 45 1 -5.6259 -3.5460 -0.0469 46 1 -0.0820 -4.2761 -1.9479 47 1 1.6679 -3.7898 -1.8959 48 1 2.4139 -6.1129 -2.1371 49 1 0.7978 -6.3452 -2.9329 50 1 1.3385 -7.2258 -0.2367 51 1 -0.3143 -6.6996 -0.7776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105551579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:03 Heat of formation + Delta-G solvation = 137.996614 kcal Electronic energy + Delta-G solvation = -34110.930212 eV Core-core repulsion = 30050.360165 eV Total energy + Delta-G solvation = -4060.570047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -44.54806 -42.54039 -39.23273 -38.52624 -35.95724 -35.32221 -34.06757 -33.27210 -33.17782 -32.14844 -29.19621 -28.72086 -26.78697 -26.68017 -25.23300 -24.56837 -24.18962 -23.35978 -22.93156 -21.74948 -20.92290 -19.81295 -19.42618 -18.41284 -17.88343 -17.51909 -17.32429 -16.61230 -16.56368 -16.35847 -15.63758 -15.39628 -15.27838 -15.10557 -14.84677 -14.76707 -14.57698 -14.34375 -14.17716 -14.04940 -13.68887 -13.49398 -13.33442 -13.12888 -12.98101 -12.92515 -12.84381 -12.45476 -12.24152 -12.17167 -12.00779 -11.96779 -11.85710 -11.69174 -11.63167 -11.42289 -11.12992 -11.00336 -10.80785 -10.74917 -10.24983 -10.24812 -9.49311 -8.99849 -7.96760 -5.23010 -0.13930 1.11399 1.34196 1.35706 1.37400 1.44777 1.69451 2.09144 2.50701 3.11752 3.32724 3.34906 3.57190 3.63668 3.73427 3.78349 3.85771 3.97930 3.98779 4.02644 4.09732 4.14215 4.26426 4.32035 4.41330 4.53065 4.57734 4.61945 4.67072 4.83083 4.85261 4.87440 4.89110 4.99997 5.03829 5.07653 5.09010 5.14369 5.23510 5.24447 5.26963 5.29128 5.37871 5.50394 5.56015 5.63399 5.70545 5.75102 5.82872 6.25940 6.29195 7.06959 7.16320 7.17678 8.00062 8.18180 9.26148 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009830 B = 0.005284 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.768398 B = 5298.230108 C = 6888.646977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.039 3.961 3 N -0.293 5.293 4 N -0.059 5.059 5 N -0.352 5.352 6 H 0.468 0.532 7 C -0.052 4.052 8 C 0.553 3.447 9 O -0.468 6.468 10 N -0.597 5.597 11 C 0.088 3.912 12 C -0.132 4.132 13 C -0.111 4.111 14 C -0.136 4.136 15 C 0.187 3.813 16 H 0.110 0.890 17 C -0.072 4.072 18 C 0.193 3.807 19 N -0.742 5.742 20 C -0.209 4.209 21 H 0.049 0.951 22 C -0.064 4.064 23 N -0.988 5.988 24 Si 0.945 3.055 25 H -0.279 1.279 26 H -0.298 1.298 27 H -0.260 1.260 28 C -0.084 4.084 29 C -0.149 4.149 30 C -0.133 4.133 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.044 0.956 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.029 0.971 43 H -0.008 1.008 44 H 0.363 0.637 45 H 0.254 0.746 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.104 0.896 49 H 0.056 0.944 50 H 0.089 0.911 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.836 -3.713 -0.017 29.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 N -0.160 5.160 4 N -0.040 5.040 5 N -0.086 5.086 6 H 0.322 0.678 7 C -0.186 4.186 8 C 0.338 3.662 9 O -0.340 6.340 10 N -0.332 5.332 11 C -0.034 4.034 12 C -0.170 4.170 13 C -0.148 4.148 14 C -0.174 4.174 15 C 0.085 3.915 16 H 0.127 0.873 17 C -0.073 4.073 18 C 0.067 3.933 19 N -0.388 5.388 20 C -0.341 4.341 21 H 0.067 0.933 22 C -0.255 4.255 23 N -0.640 5.640 24 Si 0.773 3.227 25 H -0.206 1.206 26 H -0.224 1.224 27 H -0.185 1.185 28 C -0.122 4.122 29 C -0.187 4.187 30 C -0.171 4.171 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.047 0.953 43 H 0.010 0.990 44 H 0.198 0.802 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.122 0.878 49 H 0.075 0.925 50 H 0.107 0.893 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 28.856 -2.450 -0.119 28.960 hybrid contribution -1.405 -1.020 -0.676 1.863 sum 27.451 -3.470 -0.796 27.681 Atomic orbital electron populations 1.20204 0.85365 1.04311 1.03454 1.22349 0.98557 0.87753 1.01423 1.74904 0.95753 1.26716 1.18597 1.78049 1.15415 0.93465 1.17089 1.45898 1.08792 1.06236 1.47625 0.67795 1.22115 0.85181 0.96449 1.14893 1.16944 0.85146 0.82331 0.81765 1.91253 1.21420 1.77766 1.43564 1.47883 1.23951 1.05841 1.55515 1.22348 0.86658 0.99976 0.94422 1.21900 1.03331 0.96300 0.95507 1.21492 0.96270 0.95423 1.01652 1.22032 0.98868 1.01575 0.94918 1.21055 0.94257 0.79086 0.97151 0.87276 1.22130 0.93951 0.95824 0.95351 1.20701 0.84304 0.96376 0.91904 1.42713 1.05138 1.78013 1.12919 1.18989 0.86934 1.32003 0.96171 0.93314 1.25302 0.95239 1.03175 1.01801 1.69872 0.99840 1.56054 1.38246 0.85556 0.77374 0.77947 0.81775 1.20558 1.22449 1.18488 1.22799 1.00256 0.94579 0.94586 1.23180 1.01592 0.97248 0.96648 1.22953 1.00570 0.96177 0.97391 0.90650 0.89588 0.90334 0.90694 0.86577 0.93662 0.87726 0.90911 0.89200 0.93685 0.89556 0.95299 0.98998 0.80176 0.93707 0.93301 0.92140 0.87797 0.92485 0.89275 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.46 10.20 71.23 0.73 -1.74 16 2 C 0.04 1.18 7.29 42.04 0.31 1.48 16 3 N -0.29 -8.82 12.35 -47.88 -0.59 -9.41 16 4 N -0.06 -1.43 13.35 37.02 0.49 -0.94 16 5 N -0.35 -6.32 5.72 -48.52 -0.28 -6.59 16 6 H 0.47 3.95 6.81 -219.90 -1.50 2.46 16 7 C -0.05 -1.30 6.37 40.41 0.26 -1.04 16 8 C 0.55 14.57 5.71 86.61 0.49 15.06 16 9 O -0.47 -16.31 6.20 -4.10 -0.03 -16.34 16 10 N -0.60 -10.91 2.97 -798.99 -2.37 -13.28 16 11 C 0.09 0.83 5.41 86.36 0.47 1.29 16 12 C -0.13 -1.29 6.08 30.67 0.19 -1.10 16 13 C -0.11 -1.10 5.88 30.62 0.18 -0.92 16 14 C -0.14 -2.34 5.04 30.67 0.15 -2.18 16 15 C 0.19 3.53 2.29 44.97 0.10 3.63 16 16 H 0.11 1.45 7.33 -2.38 -0.02 1.43 16 17 C -0.07 -2.05 0.26 -51.65 -0.01 -2.07 16 18 C 0.19 7.75 3.95 86.38 0.34 8.10 16 19 N -0.74 -36.77 4.46 -343.43 -1.53 -38.30 16 20 C -0.21 -12.58 10.47 84.03 0.88 -11.70 16 21 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 22 C -0.06 -3.99 5.50 84.86 0.47 -3.53 16 23 N -0.99 -65.93 13.97 21.65 0.30 -65.63 16 24 Si 0.94 48.64 27.73 68.60 1.90 50.54 16 25 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 27 H -0.26 -12.52 6.52 99.48 0.65 -11.87 16 28 C -0.08 -2.60 4.49 31.18 0.14 -2.46 16 29 C -0.15 -3.53 7.74 31.18 0.24 -3.29 16 30 C -0.13 -3.56 6.92 31.12 0.22 -3.34 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.08 3.01 6.53 -2.39 -0.02 3.00 16 34 H 0.08 0.71 4.42 -2.38 -0.01 0.70 16 35 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 0.48 8.14 -2.38 -0.02 0.47 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.04 1.09 6.55 -2.39 -0.02 1.08 16 41 H 0.09 1.35 7.74 -2.39 -0.02 1.34 16 42 H 0.03 1.27 5.26 -7.75 -0.04 1.23 16 43 H -0.01 -0.32 7.13 -2.39 -0.02 -0.34 16 44 H 0.36 17.64 2.84 -92.71 -0.26 17.37 16 45 H 0.25 16.22 8.31 -92.71 -0.77 15.45 16 46 H 0.05 1.96 5.86 -2.38 -0.01 1.95 16 47 H 0.06 1.77 6.16 -2.39 -0.01 1.76 16 48 H 0.10 1.75 7.62 -2.39 -0.02 1.74 16 49 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.09 1.83 7.70 -2.39 -0.02 1.81 16 51 H 0.06 1.89 7.33 -2.39 -0.02 1.87 16 Total: -1.00 -80.77 371.87 2.18 -78.59 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.87 Total: 25.18 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.15 Total: -3.82 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -3.97 Total: -134.15 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.03 Total: -16.34 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.90 Total: 50.54 kcal Total: -80.77 2.18 -78.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105551579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.582 kcal (2) G-P(sol) polarization free energy of solvation -80.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds