Wall clock time and date at job start Wed Apr 1 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33471 * 125.49566 * 2 1 4 4 C 1.30332 * 109.72215 * 180.02562 * 3 2 1 5 5 N 1.34674 * 108.04501 * 359.94363 * 4 3 2 6 6 N 1.30966 * 125.49430 * 180.02562 * 2 1 3 7 7 C 1.46297 * 125.04569 * 180.12808 * 5 4 3 8 8 C 1.53304 * 108.77391 * 17.00241 * 7 5 4 9 9 H 1.09001 * 109.46940 * 69.87516 * 8 7 5 10 10 C 1.50700 * 109.46882 * 189.86260 * 8 7 5 11 11 O 1.21288 * 119.99821 * 87.97579 * 10 8 7 12 12 N 1.34772 * 120.00172 * 267.97117 * 10 8 7 13 13 C 1.48314 * 127.77030 * 354.88413 * 12 10 8 14 14 C 1.54390 * 104.53881 * 219.52722 * 13 12 10 15 15 H 1.08997 * 110.33734 * 95.18191 * 14 13 12 16 16 C 1.52998 * 110.34390 * 217.33645 * 14 13 12 17 17 N 1.46503 * 109.46920 * 292.12261 * 16 14 13 18 18 C 1.36938 * 119.99449 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00574 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99456 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00209 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46944 * 270.00038 * 22 20 18 24 24 H 1.48503 * 109.47087 * 29.99760 * 22 20 18 25 25 H 1.48500 * 109.47347 * 150.00457 * 22 20 18 26 26 C 1.54288 * 105.05107 * 336.26370 * 14 13 12 27 27 H 1.09004 * 110.33529 * 240.96790 * 26 14 13 28 28 C 1.53001 * 110.34446 * 118.81966 * 26 14 13 29 29 C 1.48145 * 127.83833 * 174.96898 * 12 10 8 30 30 C 1.53160 * 109.48846 * 309.87079 * 8 7 5 31 31 C 1.50927 * 127.89970 * 179.89036 * 4 3 2 32 32 H 1.09002 * 109.47194 * 269.97578 * 1 2 3 33 33 H 1.09004 * 109.47609 * 29.97230 * 1 2 3 34 34 H 1.08994 * 109.47645 * 149.97399 * 1 2 3 35 35 H 1.09003 * 109.58105 * 257.21950 * 7 5 4 36 36 H 1.08999 * 109.70978 * 136.86509 * 7 5 4 37 37 H 1.09001 * 110.37856 * 100.80163 * 13 12 10 38 38 H 1.09000 * 110.50845 * 338.31969 * 13 12 10 39 39 H 1.08994 * 109.47143 * 172.12548 * 16 14 13 40 40 H 1.09000 * 109.47083 * 52.12518 * 16 14 13 41 41 H 0.97001 * 120.00139 * 0.02562 * 17 16 14 42 42 H 0.97004 * 120.00133 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.47119 * 59.99381 * 28 26 14 44 44 H 1.08993 * 109.47336 * 179.97438 * 28 26 14 45 45 H 1.09006 * 109.46550 * 299.99517 * 28 26 14 46 46 H 1.08999 * 110.40942 * 21.61885 * 29 12 10 47 47 H 1.09001 * 110.50603 * 259.24180 * 29 12 10 48 48 H 1.08999 * 109.51084 * 189.11879 * 30 8 7 49 49 H 1.09008 * 109.50489 * 309.24839 * 30 8 7 50 50 H 1.08995 * 109.71960 * 315.65681 * 31 4 3 51 51 H 1.08999 * 109.71349 * 76.30568 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7324 -0.0005 5 7 3.5896 -0.6133 0.0003 6 7 2.2674 -1.0663 -0.0005 7 6 4.8197 -1.4053 0.0028 8 6 5.9853 -0.5050 0.4285 9 1 5.8846 -0.2556 1.4849 10 6 7.2874 -1.2301 0.2057 11 8 7.8449 -1.1590 -0.8692 12 7 7.8325 -1.9576 1.2006 13 6 7.3601 -2.0789 2.6013 14 6 8.6517 -2.0821 3.4470 15 1 8.8732 -1.0764 3.8041 16 6 8.5124 -3.0459 4.6271 17 7 7.5175 -2.5252 5.5680 18 6 7.2223 -3.2236 6.7084 19 1 7.7232 -4.1579 6.9143 20 6 6.2793 -2.7305 7.5996 21 7 5.6684 -1.5920 7.3484 22 14 5.8771 -3.6827 9.1556 23 1 4.7630 -4.6264 8.8843 24 1 7.0748 -4.4436 9.5938 25 1 5.4737 -2.7352 10.2255 26 6 9.7581 -2.5661 2.4868 27 1 10.2036 -3.4896 2.8570 28 6 10.8307 -1.4872 2.3242 29 6 9.0392 -2.8152 1.1435 30 6 5.9681 0.7808 -0.4034 31 6 4.7522 1.6265 -0.0030 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5142 35 1 5.0055 -1.7946 -0.9982 36 1 4.7223 -2.2334 0.7047 37 1 6.8138 -3.0121 2.7381 38 1 6.7333 -1.2279 2.8679 39 1 9.4735 -3.1437 5.1318 40 1 8.1922 -4.0222 4.2630 41 1 7.0673 -1.6862 5.3829 42 1 5.0092 -1.2476 7.9711 43 1 11.2741 -1.2664 3.2951 44 1 11.6045 -1.8437 1.6444 45 1 10.3777 -0.5830 1.9175 46 1 9.6769 -2.5190 0.3106 47 1 8.7581 -3.8643 1.0516 48 1 6.8815 1.3462 -0.2187 49 1 5.9032 0.5286 -1.4619 50 1 4.6132 2.4344 -0.7213 51 1 4.9054 2.0415 0.9931 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106464363.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:06 Heat of formation + Delta-G solvation = 56.557882 kcal Electronic energy + Delta-G solvation = -31263.210475 eV Core-core repulsion = 27199.108980 eV Total energy + Delta-G solvation = -4064.101495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.48776 -40.46980 -38.47296 -36.68947 -34.70162 -33.43959 -33.03661 -32.08497 -31.49194 -29.91933 -29.10229 -28.66258 -26.68213 -25.58561 -24.55880 -23.64651 -23.03945 -21.34568 -20.86345 -20.13897 -19.75481 -19.03978 -17.59174 -17.11810 -16.85443 -16.31589 -16.00618 -15.58700 -15.21605 -14.71329 -14.58189 -14.37490 -14.33650 -13.96706 -13.79484 -13.57987 -13.35218 -13.23053 -13.15032 -12.95291 -12.74980 -12.57713 -12.46760 -12.23694 -12.10296 -11.90120 -11.80986 -11.50056 -11.34406 -11.23815 -11.17471 -10.91796 -10.70202 -10.61003 -10.42615 -10.17260 -10.09683 -9.94514 -9.80714 -9.74823 -9.39116 -8.96979 -8.81939 -7.02471 -5.85032 -3.14374 1.49311 1.92739 2.44513 2.74978 2.78461 3.38653 3.44191 3.45736 3.72415 3.97753 4.04479 4.18515 4.46494 4.53123 4.54387 4.64119 4.66987 4.75257 4.87117 4.90769 4.98244 5.10607 5.19450 5.22271 5.31782 5.38386 5.42343 5.47364 5.50009 5.52091 5.57293 5.58950 5.62357 5.68174 5.73392 5.75163 5.82380 5.91130 5.96873 6.06230 6.11023 6.22945 6.24290 6.35773 6.36815 6.60506 6.63285 6.71836 7.38088 7.62658 7.91073 8.02623 8.33402 9.45177 10.00468 10.34721 11.37626 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007481 B = 0.003451 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.116544 B = 8111.255292 C =11116.996879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.216 3.784 3 N -0.538 5.538 4 C 0.280 3.720 5 N -0.374 5.374 6 N -0.312 5.312 7 C 0.145 3.855 8 C -0.124 4.124 9 H 0.110 0.890 10 C 0.548 3.452 11 O -0.539 6.539 12 N -0.617 5.617 13 C 0.105 3.895 14 C -0.102 4.102 15 H 0.084 0.916 16 C 0.162 3.838 17 N -0.733 5.733 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.282 1.282 25 H -0.291 1.291 26 C -0.101 4.101 27 H 0.090 0.910 28 C -0.140 4.140 29 C 0.109 3.891 30 C -0.107 4.107 31 C -0.041 4.041 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.024 0.976 40 H 0.022 0.978 41 H 0.383 0.617 42 H 0.256 0.744 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.109 0.891 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.348 3.950 -17.396 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 N -0.266 5.266 4 C 0.004 3.996 5 N -0.164 5.164 6 N -0.141 5.141 7 C 0.023 3.977 8 C -0.146 4.146 9 H 0.128 0.872 10 C 0.335 3.665 11 O -0.416 6.416 12 N -0.350 5.350 13 C -0.017 4.017 14 C -0.122 4.122 15 H 0.102 0.898 16 C 0.034 3.966 17 N -0.377 5.377 18 C -0.374 4.374 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.207 1.207 25 H -0.217 1.217 26 C -0.121 4.121 27 H 0.108 0.892 28 C -0.198 4.198 29 C -0.013 4.013 30 C -0.146 4.146 31 C -0.081 4.081 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.216 0.784 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.112 0.888 49 H 0.103 0.897 50 H 0.127 0.873 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.259 3.436 -17.924 18.294 hybrid contribution -0.216 -0.359 1.140 1.215 sum 1.044 3.077 -16.784 17.095 Atomic orbital electron populations 1.20076 0.83857 1.03821 1.03830 1.24421 0.98258 0.85505 0.98345 1.70173 0.99794 1.30810 1.25863 1.24293 0.95052 0.83927 0.96352 1.50050 1.05533 1.05813 1.55014 1.77959 0.86357 1.22493 1.27248 1.21559 0.78267 0.93577 1.04331 1.21697 0.92316 0.96645 1.03981 0.87233 1.19529 0.85570 0.78394 0.83038 1.90718 1.63260 1.62620 1.25011 1.49132 1.28799 1.45705 1.11362 1.22701 0.97391 1.03137 0.78498 1.22386 0.93013 1.01556 0.95244 0.89770 1.20738 0.93307 0.94047 0.88496 1.42352 1.46476 1.26527 1.22383 1.19199 1.17891 1.03037 0.97242 0.91161 1.24727 0.99455 0.97400 0.99118 1.69641 1.30163 1.20487 1.37814 0.86210 0.78159 0.78843 0.83089 1.21675 1.20723 1.21724 1.22120 0.95717 1.00020 0.94210 0.89171 1.21820 0.97802 0.98297 1.01847 1.22439 0.86275 0.94150 0.98459 1.21596 0.98587 0.93708 1.00689 1.20440 0.86553 0.95917 1.05194 0.89756 0.89659 0.90105 0.88736 0.87848 0.89839 0.90060 0.95802 0.96017 0.78375 0.93442 0.92097 0.92740 0.92810 0.89903 0.90863 0.88806 0.89727 0.87308 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.22 3.03 8.15 -156.44 -1.27 1.76 16 3 N -0.54 -7.77 11.18 -8.03 -0.09 -7.86 16 4 C 0.28 3.60 7.72 -155.78 -1.20 2.40 16 5 N -0.37 -5.06 4.04 -58.29 -0.24 -5.29 16 6 N -0.31 -4.74 12.74 32.50 0.41 -4.33 16 7 C 0.15 1.64 6.58 -3.99 -0.03 1.61 16 8 C -0.12 -1.28 2.26 -91.53 -0.21 -1.49 16 9 H 0.11 1.13 6.37 -51.93 -0.33 0.80 16 10 C 0.55 6.65 6.91 -10.99 -0.08 6.58 16 11 O -0.54 -7.94 16.64 5.55 0.09 -7.85 16 12 N -0.62 -7.31 3.32 -169.17 -0.56 -7.87 16 13 C 0.10 1.36 6.17 -2.31 -0.01 1.34 16 14 C -0.10 -1.39 2.76 -89.22 -0.25 -1.64 16 15 H 0.08 1.22 7.71 -51.93 -0.40 0.82 16 16 C 0.16 2.86 5.37 -4.04 -0.02 2.84 16 17 N -0.73 -17.03 5.46 -59.91 -0.33 -17.35 16 18 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C -0.10 -1.11 3.31 -89.22 -0.30 -1.40 16 27 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 28 C -0.14 -1.43 8.90 37.16 0.33 -1.10 16 29 C 0.11 1.19 6.62 -2.41 -0.02 1.17 16 30 C -0.11 -0.95 4.75 -26.43 -0.13 -1.08 16 31 C -0.04 -0.37 6.33 -27.56 -0.17 -0.54 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.16 7.78 -51.93 -0.40 0.76 16 38 H 0.08 1.06 6.52 -51.93 -0.34 0.73 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 41 H 0.38 9.31 7.56 -40.82 -0.31 9.00 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.92 7.57 -51.93 -0.39 0.53 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.75 8.12 -51.93 -0.42 0.32 16 49 H 0.08 0.79 8.10 -51.92 -0.42 0.37 16 50 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 408.41 15.07 6.15 6.15 Total: -1.00 -33.83 408.41 -10.52 -44.35 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.45 Total: 6.43 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -3.22 Total: 3.29 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -0.08 Total: -69.17 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.83 -10.52 -44.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106464363.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.906 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds