Wall clock time and date at job start Wed Apr 1 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30837 * 126.46622 * 2 1 4 4 N 1.28902 * 109.74247 * 180.02562 * 3 2 1 5 5 C 1.29841 * 109.48013 * 359.97438 * 4 3 2 6 6 N 1.34690 * 126.46627 * 180.02562 * 2 1 3 7 7 C 1.46261 * 128.84436 * 0.07173 * 6 2 1 8 8 C 1.53314 * 108.73294 * 162.93359 * 7 6 2 9 9 H 1.09006 * 109.44805 * 290.26562 * 8 7 6 10 10 C 1.50696 * 109.45378 * 170.31398 * 8 7 6 11 11 O 1.21280 * 120.00169 * 359.95265 * 10 8 7 12 12 N 1.34786 * 119.99877 * 179.97438 * 10 8 7 13 13 C 1.47485 * 127.03052 * 179.97438 * 12 10 8 14 14 C 1.54005 * 107.24392 * 154.61643 * 13 12 10 15 15 H 1.08998 * 110.32937 * 120.20303 * 14 13 12 16 16 C 1.53001 * 110.32503 * 242.31631 * 14 13 12 17 17 N 1.46501 * 109.46961 * 293.54661 * 16 14 13 18 18 C 1.36939 * 120.00024 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99869 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00395 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99503 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00320 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47227 * 90.00036 * 22 20 18 24 24 H 1.48501 * 109.47371 * 210.00177 * 22 20 18 25 25 H 1.48503 * 109.47175 * 330.00251 * 22 20 18 26 26 C 1.54616 * 105.04550 * 1.20635 * 14 13 12 27 27 H 1.09001 * 110.74249 * 263.33241 * 26 14 13 28 28 C 1.52999 * 110.73839 * 140.18699 * 26 14 13 29 29 C 1.48377 * 127.17223 * 359.79560 * 12 10 8 30 30 C 1.53140 * 109.56784 * 50.28692 * 8 7 6 31 31 C 1.50799 * 128.52496 * 180.14610 * 5 4 3 32 32 H 1.08999 * 109.47050 * 269.95665 * 1 2 3 33 33 H 1.08999 * 109.47076 * 29.95450 * 1 2 3 34 34 H 1.08999 * 109.47337 * 149.95651 * 1 2 3 35 35 H 1.09001 * 109.59464 * 43.15574 * 7 6 2 36 36 H 1.09002 * 109.59527 * 282.70370 * 7 6 2 37 37 H 1.09002 * 109.91598 * 35.15729 * 13 12 10 38 38 H 1.08999 * 109.91369 * 274.06810 * 13 12 10 39 39 H 1.09001 * 109.46998 * 53.54433 * 16 14 13 40 40 H 1.09001 * 109.47115 * 173.54535 * 16 14 13 41 41 H 0.96995 * 120.00228 * 0.02562 * 17 16 14 42 42 H 0.97005 * 120.00135 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.46800 * 60.00464 * 28 26 14 44 44 H 1.09000 * 109.46856 * 179.97438 * 28 26 14 45 45 H 1.09002 * 109.47265 * 300.00125 * 28 26 14 46 46 H 1.09005 * 110.51886 * 100.79006 * 29 12 10 47 47 H 1.09006 * 110.83140 * 337.82723 * 29 12 10 48 48 H 1.08999 * 109.49570 * 50.51159 * 30 8 7 49 49 H 1.09004 * 109.49930 * 170.61350 * 30 8 7 50 50 H 1.09005 * 109.73105 * 283.69098 * 31 5 4 51 51 H 1.08998 * 109.73000 * 44.32495 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5815 -0.6156 -0.0004 6 7 2.3075 -1.0832 -0.0005 7 6 1.9366 -2.4980 -0.0025 8 6 3.1548 -3.3257 -0.4284 9 1 3.3617 -3.1504 -1.4842 10 6 2.8688 -4.7890 -0.2094 11 8 1.7985 -5.1366 0.2429 12 7 3.8026 -5.7114 -0.5157 13 6 3.6892 -7.1742 -0.3650 14 6 4.6511 -7.8140 -1.3834 15 1 5.3924 -8.4270 -0.8707 16 6 3.8712 -8.6583 -2.3932 17 7 3.2730 -9.8079 -1.7100 18 6 2.5230 -10.7100 -2.4163 19 1 2.3729 -10.5742 -3.4772 20 6 1.9567 -11.7996 -1.7691 21 7 2.1401 -11.9653 -0.4764 22 14 0.9343 -13.0305 -2.7327 23 1 1.8148 -14.1097 -3.2480 24 1 -0.1005 -13.6179 -1.8442 25 1 0.2757 -12.3426 -3.8722 26 6 5.3344 -6.6226 -2.0934 27 1 4.8333 -6.3949 -3.0343 28 6 6.8185 -6.9107 -2.3284 29 6 5.1541 -5.4668 -1.0769 30 6 4.3717 -2.9136 0.4050 31 6 4.8051 -1.4971 0.0022 32 1 -0.3633 -0.0008 1.0277 33 1 -0.3633 0.8904 -0.5131 34 1 -0.3634 -0.8896 -0.5145 35 1 1.1200 -2.6608 -0.7059 36 1 1.6245 -2.7955 0.9985 37 1 2.6665 -7.4904 -0.5708 38 1 3.9715 -7.4662 0.6465 39 1 3.0841 -8.0525 -2.8422 40 1 4.5478 -9.0102 -3.1720 41 1 3.4075 -9.9297 -0.7572 42 1 1.7446 -12.7269 -0.0240 43 1 6.9219 -7.7985 -2.9523 44 1 7.2790 -6.0593 -2.8295 45 1 7.3118 -7.0798 -1.3712 46 1 5.9093 -5.5226 -0.2928 47 1 5.1956 -4.5011 -1.5810 48 1 4.1100 -2.9285 1.4630 49 1 5.1904 -3.6097 0.2224 50 1 5.2477 -1.5152 -0.9938 51 1 5.5312 -1.1166 0.7206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107022738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:29 Heat of formation + Delta-G solvation = 49.161343 kcal Electronic energy + Delta-G solvation = -31127.564181 eV Core-core repulsion = 27063.141948 eV Total energy + Delta-G solvation = -4064.422233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.61591 -40.60295 -38.47991 -36.98397 -34.84512 -34.42852 -33.04659 -31.95020 -31.45684 -30.83560 -29.14087 -27.68323 -26.68808 -26.10393 -24.69519 -23.73353 -23.07579 -21.70632 -21.27369 -20.37189 -19.87865 -19.27764 -17.84922 -17.14713 -16.95966 -16.47345 -16.10744 -15.82372 -15.34058 -14.96691 -14.73235 -14.46342 -14.42648 -14.18772 -13.89735 -13.70870 -13.47170 -13.39884 -13.10704 -12.96502 -12.87765 -12.82767 -12.62147 -12.44199 -12.07290 -11.92724 -11.81551 -11.68759 -11.62522 -11.42353 -11.14342 -10.93470 -10.70646 -10.61212 -10.58224 -10.41703 -10.41069 -10.05045 -9.99616 -9.71720 -9.25023 -8.93704 -8.78284 -6.98364 -5.81076 -3.10332 1.51269 2.04074 2.35352 2.58460 2.75591 3.40614 3.45916 3.47674 3.65881 3.83790 3.91691 4.07303 4.14384 4.36614 4.42115 4.51610 4.54084 4.62768 4.70252 4.73094 4.83120 4.88082 5.05332 5.10212 5.14144 5.15611 5.17703 5.27124 5.35130 5.35929 5.40218 5.47515 5.51585 5.52600 5.59054 5.65965 5.68328 5.85086 5.90160 5.96093 6.04017 6.06801 6.13718 6.30840 6.34214 6.54199 6.63216 6.76225 7.37242 7.65480 7.91515 8.37399 8.47377 9.48841 10.04779 10.39140 11.41653 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002325 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.515852 B =12041.733671 C =13306.224028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.181 3.819 3 N -0.301 5.301 4 N -0.291 5.291 5 C 0.171 3.829 6 N -0.468 5.468 7 C 0.124 3.876 8 C -0.118 4.118 9 H 0.110 0.890 10 C 0.540 3.460 11 O -0.533 6.533 12 N -0.613 5.613 13 C 0.111 3.889 14 C -0.102 4.102 15 H 0.088 0.912 16 C 0.163 3.837 17 N -0.732 5.732 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.100 4.100 27 H 0.085 0.915 28 C -0.141 4.141 29 C 0.098 3.902 30 C -0.125 4.125 31 C -0.030 4.030 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.019 0.981 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 21.344 0.562 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 N -0.142 5.142 4 N -0.130 5.130 5 C -0.097 4.097 6 N -0.160 5.160 7 C 0.000 4.000 8 C -0.140 4.140 9 H 0.128 0.872 10 C 0.327 3.673 11 O -0.409 6.409 12 N -0.347 5.347 13 C -0.011 4.011 14 C -0.122 4.122 15 H 0.106 0.894 16 C 0.035 3.965 17 N -0.377 5.377 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.120 4.120 27 H 0.103 0.897 28 C -0.198 4.198 29 C -0.024 4.024 30 C -0.163 4.163 31 C -0.069 4.069 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.002 22.581 0.712 23.652 hybrid contribution -0.955 -2.227 -0.233 2.434 sum 6.047 20.354 0.479 21.239 Atomic orbital electron populations 1.20243 0.83605 1.04663 1.04236 1.24691 0.97161 0.82662 1.04135 1.74486 0.96096 1.23655 1.19955 1.74036 1.12364 1.08012 1.18592 1.24693 0.87067 0.92597 1.05309 1.46003 1.07015 1.08492 1.54450 1.21779 0.97611 0.75163 1.05399 1.21547 0.96303 0.92826 1.03309 0.87180 1.19558 0.83302 0.86129 0.78315 1.90782 1.23693 1.81491 1.44972 1.48803 1.15078 1.07741 1.63030 1.22228 1.02581 0.77266 0.98994 1.22397 0.97333 0.95793 0.96664 0.89375 1.20696 0.93994 0.88734 0.93079 1.42358 1.61051 1.25426 1.08841 1.19193 1.23515 1.01984 0.92558 0.91244 1.24739 1.01274 0.99012 0.95824 1.69651 1.49359 1.31245 1.07807 0.86192 0.79800 0.81445 0.78758 1.21693 1.21727 1.20776 1.22304 0.96957 0.94282 0.98432 0.89665 1.21741 0.94012 1.01973 1.02099 1.22846 0.83935 0.99251 0.96394 1.21893 0.97178 0.96579 1.00629 1.20222 0.91252 0.90852 1.04602 0.89444 0.88614 0.90221 0.87753 0.87770 0.88959 0.91524 0.96364 0.95996 0.78255 0.93458 0.91655 0.92597 0.92330 0.90363 0.90232 0.90118 0.88426 0.88357 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.29 36.00 0.37 -0.08 16 2 C 0.18 1.93 8.07 -155.46 -1.25 0.68 16 3 N -0.30 -4.14 12.23 32.70 0.40 -3.74 16 4 N -0.29 -3.95 12.21 32.76 0.40 -3.55 16 5 C 0.17 1.78 7.75 -155.30 -1.20 0.57 16 6 N -0.47 -4.60 3.11 -110.86 -0.35 -4.94 16 7 C 0.12 1.05 5.48 -4.01 -0.02 1.03 16 8 C -0.12 -0.94 1.86 -91.54 -0.17 -1.11 16 9 H 0.11 0.75 7.89 -51.93 -0.41 0.34 16 10 C 0.54 6.44 7.25 -10.98 -0.08 6.36 16 11 O -0.53 -8.64 16.17 5.56 0.09 -8.55 16 12 N -0.61 -7.01 3.29 -169.52 -0.56 -7.57 16 13 C 0.11 1.62 6.30 -2.98 -0.02 1.61 16 14 C -0.10 -1.40 2.64 -89.25 -0.24 -1.64 16 15 H 0.09 1.22 7.85 -51.93 -0.41 0.81 16 16 C 0.16 3.01 5.34 -4.04 -0.02 2.99 16 17 N -0.73 -17.74 5.33 -59.90 -0.32 -18.06 16 18 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.10 -0.96 3.21 -88.73 -0.29 -1.25 16 27 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 28 C -0.14 -1.11 9.16 37.16 0.34 -0.77 16 29 C 0.10 0.77 4.62 -1.97 -0.01 0.76 16 30 C -0.12 -0.76 4.98 -26.39 -0.13 -0.89 16 31 C -0.03 -0.19 6.34 -27.57 -0.17 -0.36 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.42 7.76 -51.93 -0.40 0.02 16 35 H 0.10 0.83 7.85 -51.93 -0.41 0.42 16 36 H 0.10 0.94 7.79 -51.93 -0.40 0.54 16 37 H 0.09 1.73 7.48 -51.93 -0.39 1.34 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.38 9.75 7.51 -40.82 -0.31 9.44 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 46 H 0.08 0.50 7.75 -51.93 -0.40 0.10 16 47 H 0.08 0.43 6.70 -51.93 -0.35 0.08 16 48 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 49 H 0.10 0.46 5.23 -51.93 -0.27 0.19 16 50 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -35.98 402.36 -10.06 -46.04 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.35 Total: 3.52 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -3.14 Total: 0.67 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: 0.30 Total: -64.94 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.98 -10.06 -46.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107022738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.203 kcal (2) G-P(sol) polarization free energy of solvation -35.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds