Wall clock time and date at job start Wed Apr 1 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33244 * 125.52870 * 2 1 4 4 C 1.30829 * 109.83052 * 179.72861 * 3 2 1 5 5 C 1.50703 * 125.95992 * 180.23574 * 4 3 2 6 6 N 1.34427 * 108.07583 * 0.37903 * 4 3 2 7 7 C 1.46504 * 126.81915 * 179.89923 * 6 4 3 8 8 C 1.53006 * 109.46883 * 269.70385 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47055 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00218 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00109 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99815 * 179.97438 * 12 10 9 14 14 H 1.08996 * 110.56530 * 36.44458 * 13 12 10 15 15 C 1.54857 * 110.62467 * 273.53986 * 13 12 10 16 16 C 1.55848 * 103.44352 * 241.51550 * 15 13 12 17 17 H 1.08995 * 115.55873 * 158.81567 * 16 15 13 18 18 C 1.55849 * 105.06244 * 288.17314 * 16 15 13 19 19 C 1.54857 * 103.44460 * 71.82765 * 18 16 15 20 20 C 1.55846 * 110.62247 * 159.51575 * 13 12 10 21 21 H 1.08997 * 115.56715 * 319.67774 * 20 13 12 22 22 N 1.50238 * 101.05321 * 32.93465 * 16 15 13 23 23 C 1.36936 * 130.83189 * 126.05191 * 22 16 15 24 24 H 1.08002 * 119.99547 * 179.97438 * 23 22 16 25 25 C 1.38810 * 120.00554 * 359.97438 * 23 22 16 26 26 N 1.31618 * 119.99609 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00168 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47084 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.47252 * 119.99950 * 27 25 23 30 30 H 1.48499 * 109.47180 * 239.99865 * 27 25 23 31 31 N 1.30720 * 125.52695 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47024 * 270.04304 * 1 2 3 33 33 H 1.08996 * 109.47635 * 30.04354 * 1 2 3 34 34 H 1.09001 * 109.47272 * 150.04756 * 1 2 3 35 35 H 1.08997 * 109.47231 * 270.16576 * 5 4 3 36 36 H 1.08999 * 109.47123 * 30.16984 * 5 4 3 37 37 H 1.09002 * 109.46756 * 150.16685 * 5 4 3 38 38 H 1.09001 * 109.46891 * 149.70820 * 7 6 4 39 39 H 1.08993 * 109.47378 * 29.70192 * 7 6 4 40 40 H 1.09001 * 109.46801 * 300.00349 * 8 7 6 41 41 H 1.09001 * 109.46998 * 59.99945 * 8 7 6 42 42 H 1.08996 * 109.46952 * 300.00302 * 9 8 7 43 43 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 44 44 H 0.96994 * 119.99485 * 359.97438 * 12 10 9 45 45 H 1.08996 * 110.62508 * 0.02562 * 15 13 12 46 46 H 1.09001 * 110.62242 * 122.86906 * 15 13 12 47 47 H 1.09002 * 110.62812 * 190.31571 * 18 16 15 48 48 H 1.09000 * 110.62762 * 313.34085 * 18 16 15 49 49 H 1.09001 * 110.62941 * 241.51189 * 19 18 16 50 50 H 1.09003 * 110.76468 * 118.55307 * 19 18 16 51 51 H 0.97006 * 119.99799 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7304 0.0058 5 6 4.7227 1.6653 0.0128 6 7 3.5965 -0.6127 0.0013 7 6 4.8048 -1.4413 0.0030 8 6 5.2267 -1.7307 -1.4389 9 6 6.4881 -2.5965 -1.4371 10 6 6.9041 -2.8811 -2.8573 11 8 6.2552 -2.4357 -3.7801 12 7 7.9966 -3.6314 -3.1021 13 6 8.4006 -3.9085 -4.4828 14 1 8.2117 -3.0431 -5.1179 15 6 7.6625 -5.1563 -5.0271 16 6 8.8188 -6.1525 -5.3422 17 1 8.5332 -7.2030 -5.3946 18 6 9.5235 -5.5691 -6.6040 19 6 10.2616 -4.3214 -6.0596 20 6 9.9023 -4.3207 -4.5431 21 1 10.5711 -3.7582 -3.8916 22 7 9.8075 -5.7949 -4.2691 23 6 10.4307 -6.5732 -3.3304 24 1 11.1225 -6.1264 -2.6316 25 6 10.1734 -7.9361 -3.2770 26 7 9.3300 -8.4804 -4.1284 27 14 11.0230 -8.9976 -1.9961 28 1 11.9150 -8.1506 -1.1641 29 1 10.0023 -9.6405 -1.1299 30 1 11.8266 -10.0454 -2.6755 31 7 2.2665 -1.0639 0.0005 32 1 -0.3633 0.0008 1.0277 33 1 -0.3634 0.8895 -0.5145 34 1 -0.3634 -0.8904 -0.5131 35 1 5.0109 1.8943 -1.0131 36 1 4.4539 2.5869 0.5291 37 1 5.5581 1.1908 0.5277 38 1 4.6005 -2.3804 0.5173 39 1 5.6072 -0.9125 0.5172 40 1 4.4241 -2.2595 -1.9531 41 1 5.4309 -0.7916 -1.9532 42 1 7.2908 -2.0681 -0.9228 43 1 6.2835 -3.5356 -0.9230 44 1 8.5153 -3.9880 -2.3641 45 1 6.9956 -5.5686 -4.2700 46 1 7.1076 -4.9096 -5.9323 47 1 10.2339 -6.2872 -7.0136 48 1 8.7885 -5.2827 -7.3563 49 1 9.8927 -3.4161 -6.5419 50 1 11.3383 -4.4178 -6.1991 51 1 9.1499 -9.4329 -4.0908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111263199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:18 Heat of formation + Delta-G solvation = 80.726326 kcal Electronic energy + Delta-G solvation = -30404.892449 eV Core-core repulsion = 26341.838976 eV Total energy + Delta-G solvation = -4063.053473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.32286 -39.88595 -38.54028 -35.95670 -33.81560 -33.34134 -32.60590 -32.37332 -29.89486 -29.17453 -29.05381 -28.55573 -27.71925 -26.08482 -24.25956 -22.88912 -21.23841 -20.90777 -20.65725 -19.92590 -19.70101 -18.69294 -17.30514 -17.05453 -16.54649 -16.05824 -15.95738 -15.69869 -14.87405 -14.73978 -14.40295 -14.10191 -13.95487 -13.76866 -13.64706 -13.48737 -13.43989 -13.09563 -12.82182 -12.67705 -12.42562 -12.29017 -12.06470 -11.96659 -11.87746 -11.75938 -11.27004 -11.15533 -11.06085 -10.98600 -10.96138 -10.55647 -10.41168 -10.16268 -10.13259 -9.96947 -9.89620 -9.74193 -9.51573 -9.28844 -9.17932 -9.02142 -8.49884 -7.00756 -5.80226 -3.19678 1.39575 2.05030 2.68215 2.91159 3.31246 3.36101 3.39566 3.53920 3.77713 4.13374 4.34936 4.41880 4.56501 4.59406 4.73863 4.91509 5.03008 5.07070 5.07457 5.09354 5.21140 5.30354 5.30767 5.40192 5.43050 5.53276 5.57019 5.60067 5.65249 5.78086 5.82853 5.98816 6.01283 6.06625 6.10586 6.13970 6.27007 6.29491 6.38252 6.45468 6.56629 6.61494 6.70688 6.79019 6.91129 7.08201 7.28581 7.41632 7.74208 7.93648 7.94466 8.11912 8.57271 9.01278 9.64691 10.45739 11.28727 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.002095 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.871406 B =13361.300470 C =14103.979697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.217 3.783 3 N -0.546 5.546 4 C 0.277 3.723 5 C -0.078 4.078 6 N -0.373 5.373 7 C 0.126 3.874 8 C -0.116 4.116 9 C -0.139 4.139 10 C 0.509 3.491 11 O -0.553 6.553 12 N -0.705 5.705 13 C 0.129 3.871 14 H 0.076 0.924 15 C -0.142 4.142 16 C 0.154 3.846 17 H 0.153 0.847 18 C -0.138 4.138 19 C -0.128 4.128 20 C 0.126 3.874 21 H 0.087 0.913 22 N -0.591 5.591 23 C -0.215 4.215 24 H 0.079 0.921 25 C -0.010 4.010 26 N -0.918 5.918 27 Si 0.915 3.085 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.291 1.291 31 N -0.317 5.317 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.402 0.598 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.057 0.943 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 16.775 7.886 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 N -0.275 5.275 4 C 0.001 3.999 5 C -0.137 4.137 6 N -0.164 5.164 7 C 0.004 3.996 8 C -0.155 4.155 9 C -0.179 4.179 10 C 0.294 3.706 11 O -0.432 6.432 12 N -0.354 5.354 13 C 0.022 3.978 14 H 0.094 0.906 15 C -0.183 4.183 16 C 0.047 3.953 17 H 0.170 0.830 18 C -0.178 4.178 19 C -0.167 4.167 20 C 0.017 3.983 21 H 0.105 0.895 22 N -0.312 5.312 23 C -0.343 4.343 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.566 5.566 27 Si 0.746 3.254 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 N -0.145 5.145 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.237 0.763 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.076 0.924 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.264 16.326 7.392 19.735 hybrid contribution 1.014 -0.843 0.945 1.622 sum -7.250 15.484 8.337 19.021 Atomic orbital electron populations 1.20069 0.83996 1.04008 1.03548 1.24271 0.98248 0.85782 0.98220 1.70339 0.99858 1.31009 1.26337 1.24342 0.95300 0.83957 0.96254 1.20405 0.91249 0.97353 1.04680 1.50326 1.05952 1.05487 1.54599 1.21912 0.82455 0.96139 0.99112 1.21661 0.97945 1.01436 0.94501 1.21554 0.98497 1.02101 0.95794 1.20410 0.80772 0.78494 0.90893 1.90681 1.53458 1.52678 1.46344 1.46030 1.28023 1.51485 1.09897 1.22627 0.96811 0.97064 0.81252 0.90561 1.23450 0.98979 0.96385 0.99442 1.23759 0.86663 0.99972 0.84905 0.83039 1.23052 0.99075 0.96741 0.98917 1.22872 0.99774 0.97499 0.96605 1.23152 0.92529 0.87917 0.94681 0.89461 1.46547 1.48594 1.00604 1.35429 1.19032 1.18867 0.89078 1.07288 0.90358 1.24716 0.99923 0.96519 0.99481 1.69475 1.38033 1.11045 1.38054 0.85996 0.78512 0.80436 0.80467 1.20614 1.21838 1.21794 1.78050 0.86747 1.22586 1.27147 0.90007 0.89673 0.90028 0.88880 0.88536 0.89908 0.88133 0.88288 0.90058 0.90536 0.88726 0.88444 0.76321 0.92346 0.92913 0.92600 0.93313 0.93037 0.92431 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.00 0.38 -0.10 16 2 C 0.22 2.73 8.14 -156.85 -1.28 1.46 16 3 N -0.55 -7.03 11.19 -8.16 -0.09 -7.12 16 4 C 0.28 3.01 7.98 -155.70 -1.24 1.77 16 5 C -0.08 -0.48 10.21 36.01 0.37 -0.11 16 6 N -0.37 -4.27 3.64 -58.34 -0.21 -4.48 16 7 C 0.13 1.05 6.30 -4.04 -0.03 1.02 16 8 C -0.12 -1.21 4.83 -26.73 -0.13 -1.33 16 9 C -0.14 -1.38 5.70 -27.89 -0.16 -1.54 16 10 C 0.51 7.68 7.83 -10.98 -0.09 7.60 16 11 O -0.55 -10.44 15.70 5.56 0.09 -10.36 16 12 N -0.71 -11.18 5.10 -51.40 -0.26 -11.44 16 13 C 0.13 2.32 2.73 -65.43 -0.18 2.14 16 14 H 0.08 1.39 7.36 -51.93 -0.38 1.01 16 15 C -0.14 -2.88 6.22 -24.23 -0.15 -3.03 16 16 C 0.15 3.43 4.72 -62.80 -0.30 3.14 16 17 H 0.15 3.92 5.52 -51.93 -0.29 3.63 16 18 C -0.14 -2.70 6.44 -24.23 -0.16 -2.85 16 19 C -0.13 -2.25 6.44 -24.23 -0.16 -2.41 16 20 C 0.13 2.34 5.04 -62.80 -0.32 2.03 16 21 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 22 N -0.59 -13.54 2.99 -145.81 -0.44 -13.98 16 23 C -0.21 -5.43 10.59 -15.06 -0.16 -5.59 16 24 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 26 N -0.92 -25.31 10.46 55.49 0.58 -24.73 16 27 Si 0.91 20.89 29.55 -169.99 -5.02 15.86 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 31 N -0.32 -4.33 12.70 32.42 0.41 -3.92 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.32 7.12 -51.93 -0.37 -0.05 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.50 7.10 -51.93 -0.37 0.13 16 40 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.40 6.00 8.62 -40.82 -0.35 5.65 16 45 H 0.06 1.28 7.98 -51.93 -0.41 0.87 16 46 H 0.05 1.01 7.82 -51.93 -0.41 0.61 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 49 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 51 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 410.88 15.07 6.19 6.19 Total: -1.00 -33.84 410.88 -10.86 -44.70 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -8.43 Total: 7.45 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -3.68 Total: 1.81 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.01 Total: -65.66 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.84 -10.86 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111263199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.428 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds