Wall clock time and date at job start Wed Apr 1 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33244 * 125.52870 * 2 1 4 4 C 1.30829 * 109.83052 * 179.72861 * 3 2 1 5 5 C 1.50703 * 125.95992 * 180.23574 * 4 3 2 6 6 N 1.34427 * 108.07583 * 0.37903 * 4 3 2 7 7 C 1.46504 * 126.81915 * 179.89923 * 6 4 3 8 8 C 1.53006 * 109.46883 * 269.70385 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47055 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00218 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00109 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99815 * 179.97438 * 12 10 9 14 14 H 1.08996 * 110.56530 * 36.44458 * 13 12 10 15 15 C 1.54857 * 110.62467 * 273.53986 * 13 12 10 16 16 C 1.55848 * 103.44352 * 241.51550 * 15 13 12 17 17 H 1.08995 * 115.55873 * 158.81567 * 16 15 13 18 18 C 1.55849 * 105.06244 * 288.17314 * 16 15 13 19 19 C 1.54857 * 103.44460 * 71.82765 * 18 16 15 20 20 C 1.55846 * 110.62247 * 159.51575 * 13 12 10 21 21 H 1.08997 * 115.56715 * 319.67774 * 20 13 12 22 22 N 1.50238 * 101.05321 * 32.93465 * 16 15 13 23 23 C 1.36936 * 130.83189 * 126.05191 * 22 16 15 24 24 H 1.08002 * 119.99547 * 179.97438 * 23 22 16 25 25 C 1.38810 * 120.00554 * 359.97438 * 23 22 16 26 26 N 1.31618 * 119.99609 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00168 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47084 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.47252 * 119.99950 * 27 25 23 30 30 H 1.48499 * 109.47180 * 239.99865 * 27 25 23 31 31 N 1.30720 * 125.52695 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47024 * 270.04304 * 1 2 3 33 33 H 1.08996 * 109.47635 * 30.04354 * 1 2 3 34 34 H 1.09001 * 109.47272 * 150.04756 * 1 2 3 35 35 H 1.08997 * 109.47231 * 270.16576 * 5 4 3 36 36 H 1.08999 * 109.47123 * 30.16984 * 5 4 3 37 37 H 1.09002 * 109.46756 * 150.16685 * 5 4 3 38 38 H 1.09001 * 109.46891 * 149.70820 * 7 6 4 39 39 H 1.08993 * 109.47378 * 29.70192 * 7 6 4 40 40 H 1.09001 * 109.46801 * 300.00349 * 8 7 6 41 41 H 1.09001 * 109.46998 * 59.99945 * 8 7 6 42 42 H 1.08996 * 109.46952 * 300.00302 * 9 8 7 43 43 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 44 44 H 0.96994 * 119.99485 * 359.97438 * 12 10 9 45 45 H 1.08996 * 110.62508 * 0.02562 * 15 13 12 46 46 H 1.09001 * 110.62242 * 122.86906 * 15 13 12 47 47 H 1.09002 * 110.62812 * 190.31571 * 18 16 15 48 48 H 1.09000 * 110.62762 * 313.34085 * 18 16 15 49 49 H 1.09001 * 110.62941 * 241.51189 * 19 18 16 50 50 H 1.09003 * 110.76468 * 118.55307 * 19 18 16 51 51 H 0.97006 * 119.99799 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7304 0.0058 5 6 4.7227 1.6653 0.0128 6 7 3.5965 -0.6127 0.0013 7 6 4.8048 -1.4413 0.0030 8 6 5.2267 -1.7307 -1.4389 9 6 6.4881 -2.5965 -1.4371 10 6 6.9041 -2.8811 -2.8573 11 8 6.2552 -2.4357 -3.7801 12 7 7.9966 -3.6314 -3.1021 13 6 8.4006 -3.9085 -4.4828 14 1 8.2117 -3.0431 -5.1179 15 6 7.6625 -5.1563 -5.0271 16 6 8.8188 -6.1525 -5.3422 17 1 8.5332 -7.2030 -5.3946 18 6 9.5235 -5.5691 -6.6040 19 6 10.2616 -4.3214 -6.0596 20 6 9.9023 -4.3207 -4.5431 21 1 10.5711 -3.7582 -3.8916 22 7 9.8075 -5.7949 -4.2691 23 6 10.4307 -6.5732 -3.3304 24 1 11.1225 -6.1264 -2.6316 25 6 10.1734 -7.9361 -3.2770 26 7 9.3300 -8.4804 -4.1284 27 14 11.0230 -8.9976 -1.9961 28 1 11.9150 -8.1506 -1.1641 29 1 10.0023 -9.6405 -1.1299 30 1 11.8266 -10.0454 -2.6755 31 7 2.2665 -1.0639 0.0005 32 1 -0.3633 0.0008 1.0277 33 1 -0.3634 0.8895 -0.5145 34 1 -0.3634 -0.8904 -0.5131 35 1 5.0109 1.8943 -1.0131 36 1 4.4539 2.5869 0.5291 37 1 5.5581 1.1908 0.5277 38 1 4.6005 -2.3804 0.5173 39 1 5.6072 -0.9125 0.5172 40 1 4.4241 -2.2595 -1.9531 41 1 5.4309 -0.7916 -1.9532 42 1 7.2908 -2.0681 -0.9228 43 1 6.2835 -3.5356 -0.9230 44 1 8.5153 -3.9880 -2.3641 45 1 6.9956 -5.5686 -4.2700 46 1 7.1076 -4.9096 -5.9323 47 1 10.2339 -6.2872 -7.0136 48 1 8.7885 -5.2827 -7.3563 49 1 9.8927 -3.4161 -6.5419 50 1 11.3383 -4.4178 -6.1991 51 1 9.1499 -9.4329 -4.0908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111263199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:17 Heat of formation + Delta-G solvation = 60.043628 kcal Electronic energy + Delta-G solvation = -30405.789318 eV Core-core repulsion = 26341.838976 eV Total energy + Delta-G solvation = -4063.950342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.13418 -41.29826 -39.94405 -36.77971 -35.25363 -34.40724 -34.08532 -33.23927 -30.97426 -30.72475 -30.33722 -29.67486 -28.89327 -26.98577 -26.07436 -23.87268 -22.53865 -21.72681 -21.53620 -21.40120 -21.04003 -20.26013 -18.84042 -18.29515 -17.51510 -17.16989 -16.87707 -16.84713 -16.69450 -15.81755 -15.59444 -15.35447 -15.22188 -14.93846 -14.59215 -14.46536 -14.25658 -13.87683 -13.78994 -13.64973 -13.63941 -13.34829 -13.10206 -12.99988 -12.89848 -12.87559 -12.78798 -12.74497 -12.63714 -12.51609 -12.09047 -11.94115 -11.87250 -11.85150 -11.70831 -11.21721 -11.04216 -10.95779 -10.94126 -10.76416 -10.60767 -10.31120 -9.90264 -8.86983 -7.74873 -5.14951 0.58221 1.33816 1.49746 1.51041 1.59860 1.73129 1.84249 2.37874 2.51315 3.12876 3.38724 3.44996 3.45737 3.67137 3.73346 3.90172 3.98318 4.01895 4.09118 4.22324 4.27538 4.36444 4.38694 4.45619 4.48733 4.54089 4.61658 4.64496 4.67427 4.70719 4.74323 4.83379 4.83830 4.89490 4.90862 4.98479 5.03722 5.10307 5.16461 5.16940 5.19879 5.35497 5.38501 5.49795 5.53442 5.61809 5.73979 5.90279 5.91420 6.27139 6.71421 7.06255 7.10171 7.36736 7.73824 8.59418 9.32775 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.002095 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.871406 B =13361.300470 C =14103.979697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.203 3.797 3 N -0.577 5.577 4 C 0.275 3.725 5 C -0.077 4.077 6 N -0.381 5.381 7 C 0.126 3.874 8 C -0.105 4.105 9 C -0.126 4.126 10 C 0.504 3.496 11 O -0.594 6.594 12 N -0.705 5.705 13 C 0.140 3.860 14 H 0.081 0.919 15 C -0.133 4.133 16 C 0.139 3.861 17 H 0.113 0.887 18 C -0.133 4.133 19 C -0.120 4.120 20 C 0.130 3.870 21 H 0.109 0.891 22 N -0.609 5.609 23 C -0.209 4.209 24 H 0.090 0.910 25 C -0.071 4.071 26 N -0.950 5.950 27 Si 0.974 3.026 28 H -0.262 1.262 29 H -0.300 1.300 30 H -0.303 1.303 31 N -0.358 5.358 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.144 0.856 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.139 0.861 43 H 0.110 0.890 44 H 0.409 0.591 45 H 0.030 0.970 46 H 0.058 0.942 47 H 0.037 0.963 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.061 0.939 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 19.283 9.551 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 N -0.307 5.307 4 C 0.000 4.000 5 C -0.136 4.136 6 N -0.171 5.171 7 C 0.005 3.995 8 C -0.144 4.144 9 C -0.167 4.167 10 C 0.292 3.708 11 O -0.476 6.476 12 N -0.354 5.354 13 C 0.033 3.967 14 H 0.099 0.901 15 C -0.174 4.174 16 C 0.032 3.968 17 H 0.130 0.870 18 C -0.172 4.172 19 C -0.160 4.160 20 C 0.023 3.977 21 H 0.127 0.873 22 N -0.331 5.331 23 C -0.337 4.337 24 H 0.108 0.892 25 C -0.264 4.264 26 N -0.601 5.601 27 Si 0.805 3.195 28 H -0.186 1.186 29 H -0.228 1.228 30 H -0.231 1.231 31 N -0.187 5.187 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.161 0.839 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.157 0.843 43 H 0.129 0.871 44 H 0.245 0.755 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.056 0.944 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.080 0.920 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.589 18.869 9.077 21.951 hybrid contribution 0.479 -1.574 0.363 1.685 sum -6.109 17.294 9.440 20.628 Atomic orbital electron populations 1.20202 0.81984 1.04599 1.04688 1.24963 0.99751 0.85635 0.97513 1.70361 1.01032 1.31576 1.27769 1.25226 0.96018 0.84344 0.94452 1.20656 0.90279 0.96973 1.05668 1.50497 1.05835 1.06095 1.54657 1.22126 0.82613 0.96913 0.97833 1.21499 0.96808 1.00562 0.95571 1.21564 0.99421 1.03224 0.92444 1.21293 0.79624 0.77166 0.92676 1.90667 1.54484 1.54192 1.48246 1.45999 1.28575 1.51681 1.09143 1.22371 0.95867 0.95753 0.82679 0.90065 1.23309 0.98012 0.97040 0.99041 1.23567 0.87887 0.98703 0.86611 0.86956 1.22954 0.99049 0.97218 0.97995 1.22837 0.99846 0.97485 0.95787 1.23363 0.93167 0.85493 0.95654 0.87326 1.46731 1.48545 1.02603 1.35195 1.19417 1.17864 0.89330 1.07122 0.89196 1.25458 1.01295 0.98008 1.01594 1.69742 1.39969 1.10421 1.39932 0.85047 0.77362 0.78708 0.78419 1.18608 1.22753 1.23059 1.77958 0.88197 1.23849 1.28730 0.88509 0.88796 0.89640 0.88135 0.87662 0.86943 0.87810 0.83871 0.94178 0.91155 0.84269 0.87137 0.75550 0.95065 0.92344 0.94360 0.91469 0.90150 0.92040 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.51 71.23 0.75 -0.18 16 2 C 0.20 5.14 8.14 138.63 1.13 6.27 16 3 N -0.58 -14.58 11.19 -179.73 -2.01 -16.59 16 4 C 0.28 5.56 7.98 138.23 1.10 6.66 16 5 C -0.08 -0.72 10.21 71.24 0.73 0.01 16 6 N -0.38 -8.24 3.64 -338.48 -1.23 -9.47 16 7 C 0.13 1.77 6.30 86.38 0.54 2.31 16 8 C -0.11 -2.00 4.83 30.60 0.15 -1.86 16 9 C -0.13 -2.13 5.70 29.85 0.17 -1.96 16 10 C 0.50 14.33 7.83 87.65 0.69 15.02 16 11 O -0.59 -22.07 15.70 -3.03 -0.05 -22.12 16 12 N -0.70 -20.90 5.10 -434.91 -2.22 -23.11 16 13 C 0.14 4.80 2.73 46.61 0.13 4.93 16 14 H 0.08 2.76 7.36 -2.39 -0.02 2.74 16 15 C -0.13 -5.42 6.22 32.21 0.20 -5.22 16 16 C 0.14 6.30 4.72 46.23 0.22 6.52 16 17 H 0.11 6.10 5.52 -2.39 -0.01 6.09 16 18 C -0.13 -5.08 6.44 32.21 0.21 -4.87 16 19 C -0.12 -3.92 6.44 32.21 0.21 -3.71 16 20 C 0.13 4.53 5.04 46.23 0.23 4.77 16 21 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 22 N -0.61 -27.48 2.99 -615.23 -1.84 -29.32 16 23 C -0.21 -10.38 10.59 84.03 0.89 -9.49 16 24 H 0.09 4.17 7.83 -2.91 -0.02 4.15 16 25 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 26 N -0.95 -54.24 10.46 21.65 0.23 -54.01 16 27 Si 0.97 43.22 29.55 68.60 2.03 45.24 16 28 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 29 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 30 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 31 N -0.36 -9.84 12.70 -51.33 -0.65 -10.50 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.11 0.36 7.12 -2.39 -0.02 0.34 16 38 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.14 0.73 7.10 -2.39 -0.02 0.71 16 40 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 41 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 42 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.41 11.12 8.62 -92.71 -0.80 10.33 16 45 H 0.03 1.40 7.98 -2.39 -0.02 1.38 16 46 H 0.06 2.25 7.82 -2.39 -0.02 2.23 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 48 H 0.07 2.28 7.82 -2.39 -0.02 2.26 16 49 H 0.08 2.20 7.82 -2.39 -0.02 2.18 16 50 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.24 13.75 8.31 -92.70 -0.77 12.98 16 Total: -1.00 -77.74 410.88 2.20 -75.53 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.14 Total: 28.44 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 7.81 Total: 15.90 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -7.72 Total: -143.00 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -77.74 2.20 -75.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111263199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.579 kcal (2) G-P(sol) polarization free energy of solvation -77.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds