Wall clock time and date at job start Wed Apr 1 2020 04:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 115.55145 * 2 1 4 4 C 1.53079 * 117.51762 * 214.28048 * 2 1 3 5 5 C 1.52999 * 117.50231 * 145.67058 * 2 1 3 6 6 H 1.09004 * 117.50292 * 215.00091 * 5 2 1 7 7 C 1.50696 * 117.49889 * 0.02562 * 5 2 1 8 8 O 1.21284 * 120.00109 * 359.91226 * 7 5 2 9 9 N 1.34777 * 120.00137 * 179.91011 * 7 5 2 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 5 11 11 H 1.08999 * 107.88242 * 321.55692 * 10 9 7 12 12 C 1.50956 * 108.02524 * 78.07536 * 10 9 7 13 13 C 1.53687 * 110.95226 * 194.28746 * 12 10 9 14 14 C 1.51893 * 106.89499 * 280.90538 * 13 12 10 15 15 N 1.29898 * 127.80513 * 245.30911 * 14 13 12 16 16 N 1.29028 * 109.21854 * 179.63120 * 15 14 13 17 17 C 1.30964 * 109.71452 * 0.06910 * 16 15 14 18 18 C 1.50692 * 126.61857 * 180.10041 * 17 16 15 19 19 N 1.46505 * 109.47148 * 269.97572 * 18 17 16 20 20 C 1.36942 * 120.00118 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99593 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99685 * 179.97438 * 20 19 18 23 23 N 1.31612 * 120.00503 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99643 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47265 * 89.99691 * 24 22 20 26 26 H 1.48499 * 109.46629 * 209.99951 * 24 22 20 27 27 H 1.48504 * 109.46947 * 329.99531 * 24 22 20 28 28 N 1.34591 * 124.57454 * 65.09888 * 14 13 12 29 29 C 1.47499 * 125.02951 * 0.51147 * 28 14 13 30 30 C 1.50861 * 108.02837 * 205.00371 * 10 9 7 31 31 H 1.08998 * 109.46755 * 274.32576 * 1 2 3 32 32 H 1.08996 * 109.47682 * 34.32747 * 1 2 3 33 33 H 1.09004 * 109.46674 * 154.32998 * 1 2 3 34 34 H 1.09002 * 109.47686 * 205.67243 * 3 2 1 35 35 H 1.09004 * 109.47222 * 325.67468 * 3 2 1 36 36 H 1.09002 * 109.47315 * 85.66729 * 3 2 1 37 37 H 1.08993 * 117.49688 * 145.03356 * 4 2 1 38 38 H 1.09003 * 117.50808 * 0.02562 * 4 2 1 39 39 H 0.96995 * 120.00018 * 0.27749 * 9 7 5 40 40 H 1.08999 * 109.18156 * 314.65857 * 12 10 9 41 41 H 1.08995 * 109.18160 * 73.90488 * 12 10 9 42 42 H 1.08996 * 109.96124 * 161.56748 * 13 12 10 43 43 H 1.08995 * 109.97979 * 40.25346 * 13 12 10 44 44 H 1.09004 * 109.47063 * 29.97062 * 18 17 16 45 45 H 1.08999 * 109.48069 * 149.97248 * 18 17 16 46 46 H 0.96998 * 119.99786 * 359.97438 * 19 18 17 47 47 H 0.97001 * 120.00322 * 180.02562 * 23 22 20 48 48 H 1.09007 * 109.92987 * 174.64645 * 29 28 14 49 49 H 1.08995 * 109.93615 * 53.42694 * 29 28 14 50 50 H 1.09004 * 109.14349 * 285.98782 * 30 10 9 51 51 H 1.08999 * 109.15009 * 45.19121 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2372 -1.1218 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 3.1714 -0.8746 1.2688 7 6 1.3721 -2.1405 1.4610 8 8 0.1639 -2.0526 1.4024 9 7 1.9417 -3.1502 2.1483 10 6 1.1014 -4.1413 2.8251 11 1 0.2447 -3.6189 3.2509 12 6 0.5887 -5.1075 1.7848 13 6 -0.5670 -5.9533 2.3424 14 6 0.0564 -7.0460 3.1936 15 7 0.0390 -8.3275 2.9821 16 7 0.6855 -8.9228 3.9268 17 6 1.1384 -8.0368 4.7784 18 6 1.9450 -8.3145 6.0206 19 7 1.0405 -8.5122 7.1561 20 6 1.5498 -8.7803 8.3987 21 1 2.6183 -8.8464 8.5415 22 6 0.6928 -8.9670 9.4745 23 7 -0.6092 -8.8859 9.3005 24 14 1.3876 -9.3335 11.1694 25 1 1.6203 -8.0591 11.8951 26 1 0.4227 -10.1674 11.9301 27 1 2.6722 -10.0655 11.0301 28 7 0.7450 -6.8299 4.3296 29 6 0.9928 -5.5059 4.9306 30 6 1.8993 -4.7326 3.9607 31 1 -0.3633 0.0775 1.0247 32 1 -0.3634 0.8486 -0.5795 33 1 -0.3633 -0.9263 -0.4452 34 1 3.1823 1.3088 -0.4452 35 1 1.5809 2.0743 -0.5795 36 1 2.2766 1.7417 1.0247 37 1 3.1724 -0.8760 -1.2677 38 1 1.6124 -1.8596 -1.2681 39 1 2.9080 -3.2183 2.1986 40 1 0.2368 -4.5474 0.9184 41 1 1.4001 -5.7675 1.4782 42 1 -1.1326 -6.3969 1.5230 43 1 -1.2213 -5.3325 2.9544 44 1 2.5432 -9.2135 5.8720 45 1 2.6030 -7.4696 6.2232 46 1 0.0809 -8.4531 7.0277 47 1 -1.2081 -9.0160 10.0524 48 1 1.4917 -5.6221 5.8928 49 1 0.0501 -4.9748 5.0614 50 1 2.6499 -5.4110 3.5549 51 1 2.3990 -3.9297 4.5027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127972437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:54 Heat of formation + Delta-G solvation = 75.671344 kcal Electronic energy + Delta-G solvation = -30743.909425 eV Core-core repulsion = 26680.636752 eV Total energy + Delta-G solvation = -4063.272673 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.00889 -40.77270 -38.56983 -36.92325 -35.19882 -34.57259 -33.46965 -31.52022 -31.37068 -29.81632 -29.34313 -27.80653 -26.64038 -25.89666 -24.27736 -24.07337 -22.88073 -21.34306 -20.91210 -20.57862 -19.97058 -19.43300 -17.65600 -17.36568 -16.99470 -16.52848 -15.74082 -15.58066 -15.03129 -14.80759 -14.76665 -14.68938 -14.32286 -14.05806 -13.97239 -13.58430 -13.56251 -13.29783 -12.94262 -12.91843 -12.80929 -12.57074 -12.42679 -12.29523 -12.21300 -11.94365 -11.75332 -11.61140 -11.55124 -11.15978 -11.06168 -10.92523 -10.87322 -10.64959 -10.30442 -10.18760 -10.00932 -9.93871 -9.88190 -9.72608 -9.45057 -9.01358 -8.68445 -7.08425 -5.84947 -3.17357 2.12660 2.17105 2.65792 2.70746 3.23238 3.31729 3.38555 3.44523 3.46580 4.08125 4.17207 4.20238 4.31684 4.34810 4.44014 4.51653 4.55066 4.67043 4.68294 4.77669 4.87919 4.93828 5.07227 5.09092 5.15301 5.23788 5.26236 5.29977 5.33366 5.41096 5.46659 5.52365 5.53192 5.61732 5.65651 5.68236 5.73303 5.77508 5.81522 5.88366 5.95038 6.06826 6.18541 6.20997 6.28987 6.53552 6.57821 7.12482 7.15917 7.59744 7.89881 8.30126 9.13486 9.42735 9.93478 10.29727 11.37060 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.002095 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.803188 B =13362.084378 C =14187.616254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.147 4.147 5 C -0.191 4.191 6 H 0.121 0.879 7 C 0.543 3.457 8 O -0.530 6.530 9 N -0.728 5.728 10 C 0.146 3.854 11 H 0.085 0.915 12 C -0.124 4.124 13 C -0.023 4.023 14 C 0.159 3.841 15 N -0.297 5.297 16 N -0.294 5.294 17 C 0.193 3.807 18 C 0.237 3.763 19 N -0.724 5.724 20 C -0.247 4.247 21 H 0.075 0.925 22 C -0.008 4.008 23 N -0.928 5.928 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 N -0.462 5.462 29 C 0.111 3.889 30 C -0.143 4.143 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.400 0.600 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.036 0.964 46 H 0.387 0.613 47 H 0.257 0.743 48 H 0.117 0.883 49 H 0.097 0.903 50 H 0.079 0.921 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 21.927 -20.053 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 C -0.175 4.175 4 C -0.184 4.184 5 C -0.212 4.212 6 H 0.139 0.861 7 C 0.330 3.670 8 O -0.406 6.406 9 N -0.379 5.379 10 C 0.042 3.958 11 H 0.103 0.897 12 C -0.164 4.164 13 C -0.063 4.063 14 C -0.109 4.109 15 N -0.136 5.136 16 N -0.134 5.134 17 C -0.075 4.075 18 C 0.107 3.893 19 N -0.370 5.370 20 C -0.378 4.378 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.575 5.575 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 N -0.153 5.153 29 C -0.013 4.013 30 C -0.181 4.181 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.234 0.766 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.221 0.779 47 H 0.067 0.933 48 H 0.135 0.865 49 H 0.116 0.884 50 H 0.098 0.902 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.743 20.602 -20.589 29.897 hybrid contribution 0.866 0.844 1.716 2.099 sum 7.609 21.446 -18.873 29.564 Atomic orbital electron populations 1.21361 0.90493 1.01506 1.02690 1.21610 0.96087 0.90510 1.01136 1.21410 0.99969 0.93805 1.02273 1.23234 1.02909 1.01641 0.90635 1.22377 1.02010 1.00994 0.95862 0.86085 1.19685 0.88229 0.80897 0.78194 1.90724 1.14407 1.74862 1.60606 1.46231 1.10381 1.27433 1.53823 1.20362 0.94229 0.89316 0.91924 0.89685 1.21681 0.98272 0.97582 0.98817 1.20358 0.96438 0.91723 0.97787 1.24624 1.00376 0.95908 0.89982 1.74191 1.17446 1.02214 1.19787 1.74569 1.12116 1.25499 1.01166 1.25245 1.01700 0.80504 1.00033 1.19051 0.90572 0.99419 0.80252 1.42298 1.05086 1.86314 1.03336 1.19175 0.92157 1.41727 0.84754 0.90736 1.24793 0.95296 1.02134 0.98308 1.69678 1.01264 1.55771 1.30816 0.86132 0.77863 0.77756 0.84034 1.21640 1.21663 1.20560 1.46037 1.40748 1.08620 1.19926 1.22299 1.01476 0.79865 0.97637 1.21927 0.98928 1.01060 0.96205 0.91335 0.93242 0.91639 0.92287 0.91542 0.91937 0.87856 0.88202 0.76612 0.89779 0.91283 0.87831 0.89410 0.92575 0.94605 0.77924 0.93297 0.86463 0.88440 0.90189 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 8.09 37.15 0.30 -0.54 16 2 C -0.09 -0.61 2.70 -154.47 -0.42 -1.03 16 3 C -0.12 -0.57 9.85 37.16 0.37 -0.21 16 4 C -0.15 -0.84 9.53 -26.69 -0.25 -1.10 16 5 C -0.19 -1.22 5.91 -91.77 -0.54 -1.76 16 6 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 7 C 0.54 4.66 7.20 -10.99 -0.08 4.58 16 8 O -0.53 -6.19 12.22 5.55 0.07 -6.12 16 9 N -0.73 -5.05 5.00 -55.86 -0.28 -5.33 16 10 C 0.15 1.22 1.90 -70.03 -0.13 1.08 16 11 H 0.09 0.81 7.13 -51.93 -0.37 0.44 16 12 C -0.12 -1.18 5.10 -27.40 -0.14 -1.32 16 13 C -0.02 -0.26 6.02 -26.94 -0.16 -0.42 16 14 C 0.16 2.50 7.03 -155.74 -1.09 1.40 16 15 N -0.30 -5.85 12.23 32.85 0.40 -5.45 16 16 N -0.29 -6.34 12.24 32.70 0.40 -5.94 16 17 C 0.19 3.71 7.45 -155.39 -1.16 2.55 16 18 C 0.24 4.75 6.48 -5.19 -0.03 4.72 16 19 N -0.72 -18.17 5.59 -61.09 -0.34 -18.51 16 20 C -0.25 -6.70 9.99 -15.06 -0.15 -6.85 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.24 5.50 -17.44 -0.10 -0.33 16 23 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 24 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 N -0.46 -7.13 2.72 -109.59 -0.30 -7.43 16 29 C 0.11 1.25 6.47 -3.17 -0.02 1.23 16 30 C -0.14 -1.15 5.05 -27.47 -0.14 -1.29 16 31 H 0.07 0.67 7.26 -51.93 -0.38 0.29 16 32 H 0.05 0.34 7.92 -51.93 -0.41 -0.07 16 33 H 0.06 0.62 7.02 -51.93 -0.36 0.25 16 34 H 0.06 0.23 7.90 -51.93 -0.41 -0.18 16 35 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.42 8.05 -51.93 -0.42 0.01 16 38 H 0.10 0.65 8.05 -51.93 -0.42 0.23 16 39 H 0.40 1.87 8.53 -40.82 -0.35 1.52 16 40 H 0.08 0.82 7.23 -51.93 -0.38 0.45 16 41 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 0.90 7.89 -51.93 -0.41 0.49 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.04 0.64 7.46 -51.93 -0.39 0.25 16 46 H 0.39 10.66 7.66 -40.82 -0.31 10.35 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.12 1.39 7.16 -51.92 -0.37 1.02 16 49 H 0.10 1.01 7.87 -51.93 -0.41 0.60 16 50 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 51 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 406.07 15.07 6.12 6.12 Total: -1.00 -34.91 406.07 -10.26 -45.17 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.28 Total: 7.08 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -3.75 Total: 0.72 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: 0.61 Total: -69.84 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: 0.07 Total: -6.12 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.91 -10.26 -45.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127972437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.845 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds