Wall clock time and date at job start Wed Apr 1 2020 04:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 115.55145 * 2 1 4 4 C 1.53079 * 117.51762 * 214.28048 * 2 1 3 5 5 C 1.52999 * 117.50231 * 145.67058 * 2 1 3 6 6 H 1.09004 * 117.50292 * 215.00091 * 5 2 1 7 7 C 1.50696 * 117.49889 * 0.02562 * 5 2 1 8 8 O 1.21284 * 120.00109 * 359.91226 * 7 5 2 9 9 N 1.34777 * 120.00137 * 179.91011 * 7 5 2 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 5 11 11 H 1.08999 * 107.88242 * 321.55692 * 10 9 7 12 12 C 1.50956 * 108.02524 * 78.07536 * 10 9 7 13 13 C 1.53687 * 110.95226 * 194.28746 * 12 10 9 14 14 C 1.51893 * 106.89499 * 280.90538 * 13 12 10 15 15 N 1.29898 * 127.80513 * 245.30911 * 14 13 12 16 16 N 1.29028 * 109.21854 * 179.63120 * 15 14 13 17 17 C 1.30964 * 109.71452 * 0.06910 * 16 15 14 18 18 C 1.50692 * 126.61857 * 180.10041 * 17 16 15 19 19 N 1.46505 * 109.47148 * 269.97572 * 18 17 16 20 20 C 1.36942 * 120.00118 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99593 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99685 * 179.97438 * 20 19 18 23 23 N 1.31612 * 120.00503 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99643 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47265 * 89.99691 * 24 22 20 26 26 H 1.48499 * 109.46629 * 209.99951 * 24 22 20 27 27 H 1.48504 * 109.46947 * 329.99531 * 24 22 20 28 28 N 1.34591 * 124.57454 * 65.09888 * 14 13 12 29 29 C 1.47499 * 125.02951 * 0.51147 * 28 14 13 30 30 C 1.50861 * 108.02837 * 205.00371 * 10 9 7 31 31 H 1.08998 * 109.46755 * 274.32576 * 1 2 3 32 32 H 1.08996 * 109.47682 * 34.32747 * 1 2 3 33 33 H 1.09004 * 109.46674 * 154.32998 * 1 2 3 34 34 H 1.09002 * 109.47686 * 205.67243 * 3 2 1 35 35 H 1.09004 * 109.47222 * 325.67468 * 3 2 1 36 36 H 1.09002 * 109.47315 * 85.66729 * 3 2 1 37 37 H 1.08993 * 117.49688 * 145.03356 * 4 2 1 38 38 H 1.09003 * 117.50808 * 0.02562 * 4 2 1 39 39 H 0.96995 * 120.00018 * 0.27749 * 9 7 5 40 40 H 1.08999 * 109.18156 * 314.65857 * 12 10 9 41 41 H 1.08995 * 109.18160 * 73.90488 * 12 10 9 42 42 H 1.08996 * 109.96124 * 161.56748 * 13 12 10 43 43 H 1.08995 * 109.97979 * 40.25346 * 13 12 10 44 44 H 1.09004 * 109.47063 * 29.97062 * 18 17 16 45 45 H 1.08999 * 109.48069 * 149.97248 * 18 17 16 46 46 H 0.96998 * 119.99786 * 359.97438 * 19 18 17 47 47 H 0.97001 * 120.00322 * 180.02562 * 23 22 20 48 48 H 1.09007 * 109.92987 * 174.64645 * 29 28 14 49 49 H 1.08995 * 109.93615 * 53.42694 * 29 28 14 50 50 H 1.09004 * 109.14349 * 285.98782 * 30 10 9 51 51 H 1.08999 * 109.15009 * 45.19121 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2372 -1.1218 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 3.1714 -0.8746 1.2688 7 6 1.3721 -2.1405 1.4610 8 8 0.1639 -2.0526 1.4024 9 7 1.9417 -3.1502 2.1483 10 6 1.1014 -4.1413 2.8251 11 1 0.2447 -3.6189 3.2509 12 6 0.5887 -5.1075 1.7848 13 6 -0.5670 -5.9533 2.3424 14 6 0.0564 -7.0460 3.1936 15 7 0.0390 -8.3275 2.9821 16 7 0.6855 -8.9228 3.9268 17 6 1.1384 -8.0368 4.7784 18 6 1.9450 -8.3145 6.0206 19 7 1.0405 -8.5122 7.1561 20 6 1.5498 -8.7803 8.3987 21 1 2.6183 -8.8464 8.5415 22 6 0.6928 -8.9670 9.4745 23 7 -0.6092 -8.8859 9.3005 24 14 1.3876 -9.3335 11.1694 25 1 1.6203 -8.0591 11.8951 26 1 0.4227 -10.1674 11.9301 27 1 2.6722 -10.0655 11.0301 28 7 0.7450 -6.8299 4.3296 29 6 0.9928 -5.5059 4.9306 30 6 1.8993 -4.7326 3.9607 31 1 -0.3633 0.0775 1.0247 32 1 -0.3634 0.8486 -0.5795 33 1 -0.3633 -0.9263 -0.4452 34 1 3.1823 1.3088 -0.4452 35 1 1.5809 2.0743 -0.5795 36 1 2.2766 1.7417 1.0247 37 1 3.1724 -0.8760 -1.2677 38 1 1.6124 -1.8596 -1.2681 39 1 2.9080 -3.2183 2.1986 40 1 0.2368 -4.5474 0.9184 41 1 1.4001 -5.7675 1.4782 42 1 -1.1326 -6.3969 1.5230 43 1 -1.2213 -5.3325 2.9544 44 1 2.5432 -9.2135 5.8720 45 1 2.6030 -7.4696 6.2232 46 1 0.0809 -8.4531 7.0277 47 1 -1.2081 -9.0160 10.0524 48 1 1.4917 -5.6221 5.8928 49 1 0.0501 -4.9748 5.0614 50 1 2.6499 -5.4110 3.5549 51 1 2.3990 -3.9297 4.5027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127972437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:53 Heat of formation + Delta-G solvation = 53.448537 kcal Electronic energy + Delta-G solvation = -30744.873078 eV Core-core repulsion = 26680.636752 eV Total energy + Delta-G solvation = -4064.236326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.35881 -41.41193 -39.25069 -37.67181 -36.92616 -35.68370 -34.62420 -33.28590 -32.30486 -30.93905 -30.25077 -28.31284 -27.92891 -27.19636 -25.41842 -24.74442 -24.68741 -22.39580 -21.70681 -21.57668 -21.06152 -19.99076 -19.39367 -18.36168 -17.99198 -17.31980 -17.04721 -16.60660 -16.22907 -16.10421 -15.80787 -15.52823 -15.26181 -15.11715 -15.01495 -14.59136 -14.42249 -14.34013 -14.11114 -14.00732 -13.86618 -13.45925 -13.40981 -13.14330 -12.95093 -12.85310 -12.77634 -12.70949 -12.64799 -12.51692 -12.19380 -12.12146 -12.09601 -11.90834 -11.90145 -11.36614 -11.18998 -11.13833 -11.01393 -10.82879 -10.41297 -10.18060 -10.06783 -9.12360 -7.97448 -5.30448 0.80269 1.48654 1.51245 1.52057 1.54179 1.60429 1.78178 2.05366 2.56157 2.82584 3.13561 3.34854 3.37603 3.44828 3.57812 3.68607 3.71434 3.79058 3.87494 3.92658 3.99501 4.05701 4.17333 4.18649 4.22210 4.28606 4.29524 4.48282 4.56846 4.64165 4.71108 4.81038 4.84413 4.85409 4.87455 4.95801 5.00598 5.03285 5.05870 5.07771 5.10903 5.12177 5.14008 5.18523 5.32921 5.44913 5.48123 5.57417 5.91334 6.19354 6.57608 7.27326 7.29809 7.71169 7.92251 8.19482 9.25825 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.002095 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.803188 B =13362.084378 C =14187.616254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.105 4.105 3 C -0.114 4.114 4 C -0.138 4.138 5 C -0.190 4.190 6 H 0.146 0.854 7 C 0.538 3.462 8 O -0.566 6.566 9 N -0.715 5.715 10 C 0.150 3.850 11 H 0.077 0.923 12 C -0.112 4.112 13 C -0.021 4.021 14 C 0.178 3.822 15 N -0.338 5.338 16 N -0.336 5.336 17 C 0.181 3.819 18 C 0.241 3.759 19 N -0.737 5.737 20 C -0.245 4.245 21 H 0.090 0.910 22 C -0.074 4.074 23 N -0.971 5.971 24 Si 0.981 3.019 25 H -0.281 1.281 26 H -0.301 1.301 27 H -0.266 1.266 28 N -0.454 5.454 29 C 0.101 3.899 30 C -0.128 4.128 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.414 0.586 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.370 0.630 47 H 0.251 0.749 48 H 0.114 0.886 49 H 0.108 0.892 50 H 0.078 0.922 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.315 24.216 -20.390 33.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.171 4.171 4 C -0.175 4.175 5 C -0.211 4.211 6 H 0.164 0.836 7 C 0.326 3.674 8 O -0.445 6.445 9 N -0.367 5.367 10 C 0.045 3.955 11 H 0.096 0.904 12 C -0.152 4.152 13 C -0.061 4.061 14 C -0.091 4.091 15 N -0.178 5.178 16 N -0.176 5.176 17 C -0.088 4.088 18 C 0.113 3.887 19 N -0.380 5.380 20 C -0.376 4.376 21 H 0.108 0.892 22 C -0.266 4.266 23 N -0.621 5.621 24 Si 0.809 3.191 25 H -0.208 1.208 26 H -0.228 1.228 27 H -0.191 1.191 28 N -0.144 5.144 29 C -0.020 4.020 30 C -0.166 4.166 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.251 0.749 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.202 0.798 47 H 0.060 0.940 48 H 0.132 0.868 49 H 0.127 0.873 50 H 0.097 0.903 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.352 22.915 -20.948 32.425 hybrid contribution 0.054 0.181 1.699 1.710 sum 9.407 23.096 -19.248 31.503 Atomic orbital electron populations 1.21257 0.92181 1.00884 1.01283 1.21681 0.95031 0.91807 1.02051 1.21400 1.00590 0.92575 1.02493 1.23285 1.03410 1.00594 0.90220 1.22447 1.02358 1.00073 0.96225 0.83607 1.20132 0.88043 0.81296 0.77951 1.90721 1.16091 1.75755 1.61885 1.46071 1.11016 1.26523 1.53046 1.20207 0.94399 0.89150 0.91725 0.90441 1.21564 0.97282 0.97264 0.99077 1.20590 0.97185 0.90781 0.97542 1.25327 0.98444 0.95666 0.89700 1.74094 1.19036 1.04212 1.20448 1.74448 1.13380 1.27394 1.02385 1.24948 1.02372 0.81769 0.99743 1.19088 0.90095 1.00283 0.79205 1.42448 1.04878 1.86417 1.04289 1.19647 0.92835 1.39634 0.85454 0.89242 1.25668 0.95585 1.03111 1.02271 1.69855 1.02684 1.58046 1.31504 0.85044 0.77244 0.77567 0.79256 1.20811 1.22844 1.19064 1.46221 1.39667 1.09046 1.19499 1.22666 1.02896 0.78207 0.98259 1.21828 0.97954 1.01343 0.95484 0.93372 0.92320 0.93499 0.90758 0.91392 0.91943 0.85574 0.89418 0.74905 0.89776 0.91869 0.87239 0.88003 0.93055 0.91285 0.79844 0.94011 0.86756 0.87337 0.90285 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 8.09 71.98 0.58 -1.01 16 2 C -0.11 -1.21 2.70 -52.16 -0.14 -1.35 16 3 C -0.11 -0.83 9.85 71.98 0.71 -0.12 16 4 C -0.14 -1.26 9.53 30.62 0.29 -0.97 16 5 C -0.19 -1.94 5.91 -11.54 -0.07 -2.01 16 6 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 7 C 0.54 8.27 7.20 87.66 0.63 8.90 16 8 O -0.57 -12.87 12.22 -3.04 -0.04 -12.91 16 9 N -0.71 -8.03 5.00 -449.04 -2.24 -10.27 16 10 C 0.15 2.16 1.90 43.63 0.08 2.24 16 11 H 0.08 1.32 7.13 -2.39 -0.02 1.30 16 12 C -0.11 -1.97 5.10 30.16 0.15 -1.82 16 13 C -0.02 -0.45 6.02 30.46 0.18 -0.26 16 14 C 0.18 5.52 7.03 138.83 0.98 6.50 16 15 N -0.34 -13.60 12.23 -50.00 -0.61 -14.21 16 16 N -0.34 -14.84 12.24 -50.44 -0.62 -15.46 16 17 C 0.18 6.97 7.45 138.12 1.03 8.00 16 18 C 0.24 9.57 6.48 85.63 0.56 10.13 16 19 N -0.74 -37.05 5.59 -347.18 -1.94 -38.99 16 20 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 21 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 22 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 23 N -0.97 -59.48 13.06 21.65 0.28 -59.19 16 24 Si 0.98 44.94 29.55 68.60 2.03 46.96 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 N -0.45 -13.68 2.72 -500.63 -1.36 -15.04 16 29 C 0.10 2.09 6.47 86.40 0.56 2.65 16 30 C -0.13 -1.69 5.05 30.11 0.15 -1.54 16 31 H 0.05 0.96 7.26 -2.39 -0.02 0.94 16 32 H 0.06 0.78 7.92 -2.39 -0.02 0.76 16 33 H 0.05 0.91 7.02 -2.39 -0.02 0.89 16 34 H 0.07 0.33 7.90 -2.39 -0.02 0.31 16 35 H 0.07 0.48 7.92 -2.38 -0.02 0.46 16 36 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.13 0.59 8.05 -2.39 -0.02 0.57 16 38 H 0.09 1.04 8.05 -2.39 -0.02 1.02 16 39 H 0.41 2.41 8.53 -92.71 -0.79 1.62 16 40 H 0.08 1.54 7.23 -2.39 -0.02 1.52 16 41 H 0.06 1.21 7.91 -2.39 -0.02 1.19 16 42 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.10 1.95 7.89 -2.39 -0.02 1.93 16 44 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.07 2.31 7.46 -2.39 -0.02 2.29 16 46 H 0.37 20.86 7.66 -92.71 -0.71 20.15 16 47 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 48 H 0.11 2.49 7.16 -2.38 -0.02 2.47 16 49 H 0.11 2.04 7.87 -2.39 -0.02 2.02 16 50 H 0.08 1.14 8.08 -2.38 -0.02 1.12 16 51 H 0.13 1.00 8.12 -2.39 -0.02 0.98 16 Total: -1.00 -78.04 406.07 1.95 -76.08 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.55 Total: 29.65 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 7.00 Total: 13.37 kcal Atomic # 7 Polarization: -146.67 SS G_CDS: -6.49 Total: -153.16 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.04 Total: -12.91 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -78.04 1.95 -76.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127972437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.531 kcal (2) G-P(sol) polarization free energy of solvation -78.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds