Wall clock time and date at job start Wed Apr 1 2020 04:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 115.56426 * 2 1 4 4 C 1.53006 * 117.49724 * 214.30759 * 2 1 3 5 5 C 1.52999 * 60.00089 * 252.51316 * 4 2 1 6 6 H 1.09002 * 117.49803 * 107.49109 * 5 4 2 7 7 C 1.50700 * 117.51845 * 252.51832 * 5 4 2 8 8 O 1.21288 * 119.99910 * 68.71707 * 7 5 4 9 9 N 1.34770 * 119.99999 * 248.71846 * 7 5 4 10 10 C 1.46511 * 119.99717 * 179.97438 * 9 7 5 11 11 H 1.09003 * 107.87918 * 328.45099 * 10 9 7 12 12 C 1.50951 * 108.02619 * 85.00132 * 10 9 7 13 13 C 1.53682 * 110.95710 * 194.28341 * 12 10 9 14 14 C 1.51875 * 106.89779 * 280.91649 * 13 12 10 15 15 N 1.29903 * 127.80329 * 245.15711 * 14 13 12 16 16 N 1.29038 * 109.22101 * 179.73618 * 15 14 13 17 17 C 1.30965 * 109.70933 * 0.06566 * 16 15 14 18 18 C 1.50700 * 126.60953 * 180.09274 * 17 16 15 19 19 N 1.46500 * 109.47221 * 270.02493 * 18 17 16 20 20 C 1.36937 * 120.00007 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00338 * 359.97438 * 20 19 18 22 22 C 1.38823 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99674 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99873 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46923 * 90.00346 * 24 22 20 26 26 H 1.48504 * 109.46684 * 209.99878 * 24 22 20 27 27 H 1.48492 * 109.47326 * 330.00263 * 24 22 20 28 28 N 1.34596 * 124.58382 * 65.10182 * 14 13 12 29 29 C 1.47506 * 125.02436 * 0.49712 * 28 14 13 30 30 C 1.50857 * 108.02629 * 211.93276 * 10 9 7 31 31 H 1.08998 * 109.47083 * 274.31145 * 1 2 3 32 32 H 1.08994 * 109.46707 * 34.31237 * 1 2 3 33 33 H 1.09006 * 109.47074 * 154.31042 * 1 2 3 34 34 H 1.09001 * 109.47160 * 205.68946 * 3 2 1 35 35 H 1.08999 * 109.46762 * 325.68854 * 3 2 1 36 36 H 1.08998 * 109.47049 * 85.68507 * 3 2 1 37 37 H 1.09003 * 117.49619 * 145.02013 * 4 2 1 38 38 H 1.08995 * 117.50015 * 0.02562 * 4 2 1 39 39 H 0.96997 * 120.00729 * 359.97438 * 9 7 5 40 40 H 1.08997 * 109.18163 * 314.66442 * 12 10 9 41 41 H 1.09000 * 109.18651 * 73.90440 * 12 10 9 42 42 H 1.09002 * 109.96683 * 40.26361 * 13 12 10 43 43 H 1.09001 * 109.96439 * 161.56709 * 13 12 10 44 44 H 1.09000 * 109.47781 * 30.02522 * 18 17 16 45 45 H 1.09000 * 109.47136 * 150.02596 * 18 17 16 46 46 H 0.97003 * 120.00200 * 359.97438 * 19 18 17 47 47 H 0.96996 * 119.99888 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.93339 * 53.44964 * 29 28 14 49 49 H 1.09003 * 109.93089 * 174.65985 * 29 28 14 50 50 H 1.09002 * 109.14670 * 285.97799 * 30 10 9 51 51 H 1.08995 * 109.15131 * 45.13165 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1211 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 1.6112 -1.8585 1.2683 7 6 3.5290 -0.7811 1.4613 8 8 3.9705 0.3471 1.4034 9 7 4.1943 -1.7307 2.1484 10 6 5.4512 -1.4002 2.8248 11 1 5.9481 -0.6217 2.2460 12 6 5.1156 -0.8310 4.1820 13 6 6.3380 -0.1391 4.8055 14 6 7.2233 -1.2346 5.3736 15 7 7.5208 -1.4521 6.6192 16 7 8.2960 -2.4807 6.6975 17 6 8.5218 -2.9560 5.4982 18 6 9.3724 -4.1503 5.1501 19 7 10.7527 -3.7164 4.9205 20 6 11.7127 -4.6346 4.5879 21 1 11.4523 -5.6787 4.4953 22 6 13.0205 -4.2234 4.3698 23 7 13.9433 -5.1060 4.0506 24 14 13.4707 -2.4175 4.5294 25 1 13.8764 -2.1303 5.9287 26 1 14.5971 -2.1054 3.6133 27 1 12.2965 -1.5813 4.1730 28 7 7.8477 -2.1716 4.6361 29 6 7.7799 -2.2761 3.1664 30 6 6.3284 -2.6274 2.8054 31 1 -0.3633 0.0773 1.0247 32 1 -0.3632 0.8488 -0.5793 33 1 -0.3633 -0.9261 -0.4455 34 1 3.1825 1.3083 -0.4455 35 1 1.5812 2.0742 -0.5793 36 1 2.2773 1.7413 1.0247 37 1 3.1716 -0.8753 -1.2683 38 1 1.6112 -1.8583 -1.2686 39 1 3.8410 -2.6328 2.1951 40 1 4.3087 -0.1059 4.0767 41 1 4.7876 -1.6377 4.8377 42 1 6.8799 0.4186 4.0416 43 1 6.0192 0.5327 5.6025 44 1 9.3484 -4.8655 5.9723 45 1 8.9847 -4.6217 4.2470 46 1 10.9866 -2.7787 5.0034 47 1 14.8572 -4.8188 3.8986 48 1 8.0557 -1.3240 2.7130 49 1 8.4499 -3.0624 2.8184 50 1 5.9462 -3.3514 3.5250 51 1 6.3044 -3.0683 1.8089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127972438.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:58 Heat of formation + Delta-G solvation = 79.384518 kcal Electronic energy + Delta-G solvation = -30829.627255 eV Core-core repulsion = 26766.515597 eV Total energy + Delta-G solvation = -4063.111658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.15534 -40.81353 -38.63327 -36.99683 -35.40692 -34.69151 -33.55783 -31.67106 -31.46813 -29.93872 -29.61939 -27.83937 -26.84467 -26.14434 -24.35449 -24.15229 -22.50642 -21.38657 -20.95941 -20.73396 -20.12763 -19.48437 -18.00650 -17.57629 -17.08428 -16.59360 -15.95943 -15.55094 -15.14549 -14.98049 -14.74127 -14.58718 -14.44975 -14.25981 -14.02954 -13.78903 -13.52860 -13.19970 -13.07862 -12.94489 -12.85142 -12.70110 -12.57092 -12.34905 -12.24144 -12.10677 -11.90258 -11.66862 -11.59483 -11.42337 -11.22657 -11.05244 -10.93974 -10.68185 -10.35502 -10.27838 -10.11596 -10.07996 -9.79451 -9.70164 -9.52753 -9.04846 -8.84305 -7.40534 -5.87181 -3.25523 1.98890 2.10759 2.56651 2.60995 3.08038 3.27832 3.31729 3.37616 3.41969 3.99984 4.12927 4.16803 4.22680 4.29399 4.34499 4.48012 4.51184 4.60534 4.64654 4.67538 4.74206 4.82515 4.98219 5.02500 5.09343 5.19954 5.21164 5.22688 5.24634 5.33667 5.43609 5.44882 5.48796 5.50359 5.57094 5.58705 5.63998 5.65366 5.67280 5.77803 5.79589 6.00773 6.05079 6.16887 6.17977 6.39471 6.45318 7.01037 7.07194 7.83125 7.84771 8.30179 8.98395 9.05721 9.78562 9.96437 11.30146 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.002222 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.907867 B =12600.060290 C =13182.801022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.104 4.104 4 C -0.146 4.146 5 C -0.192 4.192 6 H 0.122 0.878 7 C 0.544 3.456 8 O -0.531 6.531 9 N -0.727 5.727 10 C 0.143 3.857 11 H 0.089 0.911 12 C -0.124 4.124 13 C -0.024 4.024 14 C 0.161 3.839 15 N -0.296 5.296 16 N -0.292 5.292 17 C 0.186 3.814 18 C 0.242 3.758 19 N -0.748 5.748 20 C -0.251 4.251 21 H 0.095 0.905 22 C 0.013 3.987 23 N -0.927 5.927 24 Si 0.884 3.116 25 H -0.281 1.281 26 H -0.289 1.289 27 H -0.281 1.281 28 N -0.463 5.463 29 C 0.108 3.892 30 C -0.142 4.142 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.400 0.600 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.364 0.636 47 H 0.262 0.738 48 H 0.097 0.903 49 H 0.118 0.882 50 H 0.080 0.920 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.477 8.921 -11.219 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C -0.161 4.161 4 C -0.184 4.184 5 C -0.213 4.213 6 H 0.140 0.860 7 C 0.331 3.669 8 O -0.407 6.407 9 N -0.378 5.378 10 C 0.039 3.961 11 H 0.107 0.893 12 C -0.164 4.164 13 C -0.064 4.064 14 C -0.107 4.107 15 N -0.136 5.136 16 N -0.132 5.132 17 C -0.082 4.082 18 C 0.113 3.887 19 N -0.395 5.395 20 C -0.380 4.380 21 H 0.113 0.887 22 C -0.184 4.184 23 N -0.574 5.574 24 Si 0.714 3.286 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.208 1.208 28 N -0.154 5.154 29 C -0.015 4.015 30 C -0.181 4.181 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.235 0.765 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.123 0.877 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.197 0.803 47 H 0.072 0.928 48 H 0.116 0.884 49 H 0.137 0.863 50 H 0.099 0.901 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -28.974 9.648 -9.814 32.076 hybrid contribution 0.333 0.463 -1.132 1.267 sum -28.641 10.111 -10.946 32.285 Atomic orbital electron populations 1.21411 0.91460 1.02323 1.02272 1.21602 0.94736 0.91873 1.01129 1.21362 0.99650 0.92384 1.02670 1.23228 1.03096 1.01481 0.90582 1.22377 0.97719 1.05279 0.95900 0.86045 1.19701 0.84563 0.84754 0.77905 1.90724 1.68196 1.20529 1.61267 1.46203 1.24655 1.13585 1.53389 1.20374 0.84363 0.97658 0.93728 0.89308 1.21694 0.98111 1.01001 0.95555 1.20378 0.92711 0.92650 1.00664 1.24663 1.01146 0.95710 0.89222 1.74214 1.12678 1.11389 1.15284 1.74589 1.13321 1.06243 1.19054 1.25300 0.98690 0.98181 0.85994 1.19020 0.82855 0.87420 0.99447 1.42643 1.03810 1.07131 1.85935 1.18972 0.87783 0.91024 1.40251 0.88726 1.24632 0.95672 0.97050 1.01066 1.69688 1.01935 1.32500 1.53294 0.86572 0.77664 0.86279 0.78063 1.20724 1.21528 1.20759 1.46091 1.36748 1.23456 1.09138 1.22355 0.97571 1.05439 0.76174 1.21931 0.93949 0.98009 1.04207 0.91941 0.91528 0.92257 0.91666 0.93211 0.91350 0.88194 0.87799 0.76548 0.89847 0.91161 0.89400 0.87732 0.91660 0.93704 0.80311 0.92828 0.88449 0.86338 0.90142 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 9.85 37.16 0.37 -0.18 16 2 C -0.09 -0.59 2.70 -154.50 -0.42 -1.01 16 3 C -0.10 -0.82 8.09 37.16 0.30 -0.52 16 4 C -0.15 -0.81 9.53 -26.73 -0.25 -1.06 16 5 C -0.19 -1.16 5.91 -91.77 -0.54 -1.70 16 6 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 7 C 0.54 4.46 7.35 -10.99 -0.08 4.38 16 8 O -0.53 -6.03 12.66 5.55 0.07 -5.96 16 9 N -0.73 -4.71 4.89 -55.86 -0.27 -4.99 16 10 C 0.14 1.11 1.95 -70.03 -0.14 0.97 16 11 H 0.09 0.80 6.90 -51.93 -0.36 0.44 16 12 C -0.12 -1.08 5.14 -27.41 -0.14 -1.22 16 13 C -0.02 -0.24 6.02 -26.95 -0.16 -0.41 16 14 C 0.16 2.36 7.03 -155.74 -1.09 1.26 16 15 N -0.30 -5.51 12.23 32.84 0.40 -5.11 16 16 N -0.29 -5.95 12.24 32.71 0.40 -5.55 16 17 C 0.19 3.36 7.45 -155.40 -1.16 2.21 16 18 C 0.24 4.61 6.48 -5.19 -0.03 4.58 16 19 N -0.75 -17.56 5.40 -61.08 -0.33 -17.89 16 20 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.01 0.36 5.50 -17.43 -0.10 0.27 16 23 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 24 Si 0.88 22.26 27.74 -169.99 -4.71 17.55 16 25 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 28 N -0.46 -6.69 2.72 -109.58 -0.30 -6.99 16 29 C 0.11 1.13 6.47 -3.16 -0.02 1.11 16 30 C -0.14 -1.07 5.09 -27.47 -0.14 -1.21 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 33 H 0.06 0.22 7.90 -51.93 -0.41 -0.19 16 34 H 0.06 0.60 7.02 -51.93 -0.36 0.24 16 35 H 0.05 0.33 7.92 -51.93 -0.41 -0.08 16 36 H 0.07 0.64 7.25 -51.93 -0.38 0.27 16 37 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 38 H 0.10 0.40 8.05 -51.93 -0.42 -0.02 16 39 H 0.40 1.72 8.61 -40.82 -0.35 1.37 16 40 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 41 H 0.07 0.67 7.91 -51.93 -0.41 0.25 16 42 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.05 0.76 7.46 -51.93 -0.39 0.37 16 46 H 0.36 8.79 5.52 -40.82 -0.23 8.56 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.10 0.91 7.87 -51.93 -0.41 0.50 16 49 H 0.12 1.30 7.16 -51.93 -0.37 0.92 16 50 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 51 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -35.36 404.11 -9.91 -45.28 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.27 Total: 4.81 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.77 Total: 0.43 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: 0.68 Total: -68.20 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: 0.07 Total: -5.96 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.36 -9.91 -45.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127972438.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.660 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds