Wall clock time and date at job start Wed Apr 1 2020 04:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 115.56426 * 2 1 4 4 C 1.53006 * 117.49724 * 214.30759 * 2 1 3 5 5 C 1.52999 * 60.00089 * 252.51316 * 4 2 1 6 6 H 1.09002 * 117.49803 * 107.49109 * 5 4 2 7 7 C 1.50700 * 117.51845 * 252.51832 * 5 4 2 8 8 O 1.21288 * 119.99910 * 68.71707 * 7 5 4 9 9 N 1.34770 * 119.99999 * 248.71846 * 7 5 4 10 10 C 1.46511 * 119.99717 * 179.97438 * 9 7 5 11 11 H 1.09003 * 107.87918 * 328.45099 * 10 9 7 12 12 C 1.50951 * 108.02619 * 85.00132 * 10 9 7 13 13 C 1.53682 * 110.95710 * 194.28341 * 12 10 9 14 14 C 1.51875 * 106.89779 * 280.91649 * 13 12 10 15 15 N 1.29903 * 127.80329 * 245.15711 * 14 13 12 16 16 N 1.29038 * 109.22101 * 179.73618 * 15 14 13 17 17 C 1.30965 * 109.70933 * 0.06566 * 16 15 14 18 18 C 1.50700 * 126.60953 * 180.09274 * 17 16 15 19 19 N 1.46500 * 109.47221 * 270.02493 * 18 17 16 20 20 C 1.36937 * 120.00007 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00338 * 359.97438 * 20 19 18 22 22 C 1.38823 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99674 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99873 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46923 * 90.00346 * 24 22 20 26 26 H 1.48504 * 109.46684 * 209.99878 * 24 22 20 27 27 H 1.48492 * 109.47326 * 330.00263 * 24 22 20 28 28 N 1.34596 * 124.58382 * 65.10182 * 14 13 12 29 29 C 1.47506 * 125.02436 * 0.49712 * 28 14 13 30 30 C 1.50857 * 108.02629 * 211.93276 * 10 9 7 31 31 H 1.08998 * 109.47083 * 274.31145 * 1 2 3 32 32 H 1.08994 * 109.46707 * 34.31237 * 1 2 3 33 33 H 1.09006 * 109.47074 * 154.31042 * 1 2 3 34 34 H 1.09001 * 109.47160 * 205.68946 * 3 2 1 35 35 H 1.08999 * 109.46762 * 325.68854 * 3 2 1 36 36 H 1.08998 * 109.47049 * 85.68507 * 3 2 1 37 37 H 1.09003 * 117.49619 * 145.02013 * 4 2 1 38 38 H 1.08995 * 117.50015 * 0.02562 * 4 2 1 39 39 H 0.96997 * 120.00729 * 359.97438 * 9 7 5 40 40 H 1.08997 * 109.18163 * 314.66442 * 12 10 9 41 41 H 1.09000 * 109.18651 * 73.90440 * 12 10 9 42 42 H 1.09002 * 109.96683 * 40.26361 * 13 12 10 43 43 H 1.09001 * 109.96439 * 161.56709 * 13 12 10 44 44 H 1.09000 * 109.47781 * 30.02522 * 18 17 16 45 45 H 1.09000 * 109.47136 * 150.02596 * 18 17 16 46 46 H 0.97003 * 120.00200 * 359.97438 * 19 18 17 47 47 H 0.96996 * 119.99888 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.93339 * 53.44964 * 29 28 14 49 49 H 1.09003 * 109.93089 * 174.65985 * 29 28 14 50 50 H 1.09002 * 109.14670 * 285.97799 * 30 10 9 51 51 H 1.08995 * 109.15131 * 45.13165 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1211 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 1.6112 -1.8585 1.2683 7 6 3.5290 -0.7811 1.4613 8 8 3.9705 0.3471 1.4034 9 7 4.1943 -1.7307 2.1484 10 6 5.4512 -1.4002 2.8248 11 1 5.9481 -0.6217 2.2460 12 6 5.1156 -0.8310 4.1820 13 6 6.3380 -0.1391 4.8055 14 6 7.2233 -1.2346 5.3736 15 7 7.5208 -1.4521 6.6192 16 7 8.2960 -2.4807 6.6975 17 6 8.5218 -2.9560 5.4982 18 6 9.3724 -4.1503 5.1501 19 7 10.7527 -3.7164 4.9205 20 6 11.7127 -4.6346 4.5879 21 1 11.4523 -5.6787 4.4953 22 6 13.0205 -4.2234 4.3698 23 7 13.9433 -5.1060 4.0506 24 14 13.4707 -2.4175 4.5294 25 1 13.8764 -2.1303 5.9287 26 1 14.5971 -2.1054 3.6133 27 1 12.2965 -1.5813 4.1730 28 7 7.8477 -2.1716 4.6361 29 6 7.7799 -2.2761 3.1664 30 6 6.3284 -2.6274 2.8054 31 1 -0.3633 0.0773 1.0247 32 1 -0.3632 0.8488 -0.5793 33 1 -0.3633 -0.9261 -0.4455 34 1 3.1825 1.3083 -0.4455 35 1 1.5812 2.0742 -0.5793 36 1 2.2773 1.7413 1.0247 37 1 3.1716 -0.8753 -1.2683 38 1 1.6112 -1.8583 -1.2686 39 1 3.8410 -2.6328 2.1951 40 1 4.3087 -0.1059 4.0767 41 1 4.7876 -1.6377 4.8377 42 1 6.8799 0.4186 4.0416 43 1 6.0192 0.5327 5.6025 44 1 9.3484 -4.8655 5.9723 45 1 8.9847 -4.6217 4.2470 46 1 10.9866 -2.7787 5.0034 47 1 14.8572 -4.8188 3.8986 48 1 8.0557 -1.3240 2.7130 49 1 8.4499 -3.0624 2.8184 50 1 5.9462 -3.3514 3.5250 51 1 6.3044 -3.0683 1.8089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127972438.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:57 Heat of formation + Delta-G solvation = 56.725358 kcal Electronic energy + Delta-G solvation = -30830.609830 eV Core-core repulsion = 26766.515597 eV Total energy + Delta-G solvation = -4064.094233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.40924 -41.41280 -39.26612 -37.69424 -37.12047 -35.72498 -34.63910 -33.53769 -32.32851 -31.20745 -30.27099 -28.32366 -28.16693 -27.24158 -25.37409 -24.72300 -24.39027 -22.44751 -21.72560 -21.58043 -21.17174 -20.05673 -19.87592 -18.36420 -18.00334 -17.34370 -17.15445 -16.52081 -16.25103 -16.16547 -16.00742 -15.67752 -15.28577 -15.05152 -14.89824 -14.56318 -14.50774 -14.42350 -14.20894 -14.00679 -13.92101 -13.70713 -13.44761 -13.31336 -13.08486 -12.96125 -12.84235 -12.71167 -12.69436 -12.54145 -12.21917 -12.18890 -12.09967 -11.89565 -11.86890 -11.40544 -11.23311 -11.14354 -11.09696 -10.85637 -10.40895 -10.24194 -10.09038 -9.43806 -8.07599 -5.43174 0.74547 1.30859 1.37159 1.40605 1.45530 1.52306 1.73443 2.04862 2.41819 2.81359 3.09679 3.24403 3.28418 3.42424 3.56375 3.64954 3.68068 3.70734 3.78423 3.87796 3.90790 3.98371 4.14906 4.17171 4.21328 4.27048 4.29340 4.46773 4.54283 4.62312 4.70279 4.79783 4.83599 4.84966 4.87036 4.95559 4.99082 5.00812 5.02383 5.06332 5.10116 5.11471 5.12949 5.15107 5.31982 5.44067 5.56472 5.68248 5.85962 6.14551 6.55948 6.96395 7.28348 7.66453 7.69201 7.88037 9.12648 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.002222 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.907867 B =12600.060290 C =13182.801022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.099 4.099 4 C -0.137 4.137 5 C -0.191 4.191 6 H 0.145 0.855 7 C 0.539 3.461 8 O -0.567 6.567 9 N -0.715 5.715 10 C 0.147 3.853 11 H 0.081 0.919 12 C -0.113 4.113 13 C -0.022 4.022 14 C 0.180 3.820 15 N -0.336 5.336 16 N -0.331 5.331 17 C 0.176 3.824 18 C 0.245 3.755 19 N -0.751 5.751 20 C -0.231 4.231 21 H 0.075 0.925 22 C -0.049 4.049 23 N -0.973 5.973 24 Si 0.945 3.055 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.263 1.263 28 N -0.455 5.455 29 C 0.098 3.902 30 C -0.129 4.129 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.414 0.586 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.362 0.638 47 H 0.260 0.740 48 H 0.112 0.888 49 H 0.116 0.884 50 H 0.078 0.922 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.025 9.532 -12.801 35.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.106 4.106 3 C -0.156 4.156 4 C -0.174 4.174 5 C -0.212 4.212 6 H 0.163 0.837 7 C 0.327 3.673 8 O -0.446 6.446 9 N -0.366 5.366 10 C 0.042 3.958 11 H 0.099 0.901 12 C -0.153 4.153 13 C -0.062 4.062 14 C -0.089 4.089 15 N -0.176 5.176 16 N -0.172 5.172 17 C -0.093 4.093 18 C 0.117 3.883 19 N -0.397 5.397 20 C -0.362 4.362 21 H 0.093 0.907 22 C -0.242 4.242 23 N -0.623 5.623 24 Si 0.773 3.227 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.188 1.188 28 N -0.145 5.145 29 C -0.023 4.023 30 C -0.168 4.168 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.144 0.856 39 H 0.251 0.749 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.130 0.870 49 H 0.135 0.865 50 H 0.097 0.903 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -31.588 10.241 -11.407 35.111 hybrid contribution 1.014 0.269 -0.648 1.233 sum -30.574 10.510 -12.055 34.504 Atomic orbital electron populations 1.21401 0.90011 1.03208 1.02472 1.21672 0.95781 0.91072 1.02091 1.21259 0.99051 0.93985 1.01317 1.23275 1.02737 1.01251 0.90154 1.22442 0.96831 1.05604 0.96279 0.83750 1.20114 0.85114 0.84361 0.77699 1.90719 1.69187 1.22070 1.62585 1.46060 1.23987 1.14065 1.52535 1.20238 0.84937 0.97552 0.93026 0.90082 1.21587 0.97191 1.00698 0.95812 1.20613 0.92678 0.91647 1.01252 1.25351 0.99715 0.95481 0.88329 1.74131 1.14019 1.11832 1.17582 1.74483 1.14534 1.07384 1.20750 1.24887 0.99536 0.98549 0.86360 1.19034 0.80979 0.87985 1.00301 1.42622 1.05024 1.06326 1.85773 1.18974 0.88466 0.90801 1.37915 0.90746 1.25308 0.95901 1.00912 1.02099 1.69828 1.02265 1.34503 1.55665 0.85578 0.77820 0.81911 0.77343 1.21519 1.21508 1.18783 1.46268 1.35479 1.22351 1.10444 1.22732 0.99592 1.06353 0.73670 1.21838 0.91752 0.97707 1.05455 0.91975 0.91375 0.90788 0.93519 0.92324 0.93300 0.89333 0.85583 0.74946 0.89708 0.91708 0.87832 0.87050 0.92358 0.90792 0.80585 0.93113 0.86956 0.86540 0.90291 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.85 71.98 0.71 -0.08 16 2 C -0.11 -1.15 2.70 -52.18 -0.14 -1.29 16 3 C -0.10 -1.53 8.09 71.98 0.58 -0.95 16 4 C -0.14 -1.16 9.53 30.60 0.29 -0.87 16 5 C -0.19 -1.82 5.91 -11.54 -0.07 -1.89 16 6 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 7 C 0.54 7.77 7.35 87.66 0.64 8.41 16 8 O -0.57 -12.32 12.66 -3.06 -0.04 -12.36 16 9 N -0.71 -7.25 4.89 -449.04 -2.20 -9.45 16 10 C 0.15 1.88 1.95 43.63 0.08 1.96 16 11 H 0.08 1.25 6.90 -2.39 -0.02 1.23 16 12 C -0.11 -1.72 5.14 30.16 0.16 -1.56 16 13 C -0.02 -0.40 6.02 30.45 0.18 -0.22 16 14 C 0.18 5.02 7.03 138.82 0.98 5.99 16 15 N -0.34 -12.36 12.23 -50.01 -0.61 -12.97 16 16 N -0.33 -13.45 12.24 -50.44 -0.62 -14.06 16 17 C 0.18 6.18 7.45 138.12 1.03 7.21 16 18 C 0.24 9.09 6.48 85.63 0.56 9.65 16 19 N -0.75 -34.56 5.40 -347.17 -1.87 -36.43 16 20 C -0.23 -12.63 10.47 84.04 0.88 -11.75 16 21 H 0.07 4.32 8.06 -2.91 -0.02 4.29 16 22 C -0.05 -2.85 5.50 84.86 0.47 -2.39 16 23 N -0.97 -60.56 13.97 21.65 0.30 -60.26 16 24 Si 0.94 45.96 27.74 68.60 1.90 47.86 16 25 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.26 -11.80 6.52 99.48 0.65 -11.15 16 28 N -0.46 -12.30 2.72 -500.61 -1.36 -13.66 16 29 C 0.10 1.77 6.47 86.40 0.56 2.33 16 30 C -0.13 -1.52 5.09 30.11 0.15 -1.37 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.45 7.92 -2.39 -0.02 0.43 16 33 H 0.07 0.30 7.90 -2.38 -0.02 0.28 16 34 H 0.05 0.87 7.02 -2.39 -0.02 0.86 16 35 H 0.06 0.74 7.92 -2.39 -0.02 0.72 16 36 H 0.05 0.93 7.25 -2.39 -0.02 0.91 16 37 H 0.09 0.97 8.05 -2.39 -0.02 0.96 16 38 H 0.13 0.52 8.05 -2.39 -0.02 0.50 16 39 H 0.41 2.11 8.61 -92.71 -0.80 1.31 16 40 H 0.08 1.33 7.91 -2.39 -0.02 1.31 16 41 H 0.06 1.08 7.91 -2.39 -0.02 1.06 16 42 H 0.10 1.65 7.89 -2.39 -0.02 1.63 16 43 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.07 2.35 7.46 -2.39 -0.02 2.33 16 46 H 0.36 16.96 5.52 -92.71 -0.51 16.45 16 47 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.11 1.74 7.87 -2.39 -0.02 1.73 16 49 H 0.12 2.22 7.16 -2.39 -0.02 2.20 16 50 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 51 H 0.12 0.92 8.12 -2.39 -0.02 0.90 16 Total: -1.00 -78.13 404.11 2.15 -75.98 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.41 Total: 22.14 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 7.06 Total: 13.19 kcal Atomic # 7 Polarization: -140.47 SS G_CDS: -6.36 Total: -146.83 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.04 Total: -12.36 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.86 kcal Total: -78.13 2.15 -75.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127972438.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.709 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds