Wall clock time and date at job start Wed Apr 1 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33238 * 125.53203 * 2 1 4 4 C 1.30831 * 109.83327 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.96323 * 179.97438 * 4 3 2 6 6 N 1.34433 * 108.07566 * 359.97438 * 4 3 2 7 7 C 1.46495 * 126.82180 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47419 * 89.99760 * 7 6 4 9 9 C 1.53007 * 109.47055 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47011 * 180.02562 * 9 8 7 11 11 O 1.21288 * 120.00318 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00258 * 180.02562 * 10 9 8 13 13 C 1.47890 * 134.34587 * 180.02562 * 12 10 9 14 14 C 1.52364 * 85.73562 * 156.54237 * 13 12 10 15 15 C 1.48159 * 134.44478 * 359.88358 * 12 10 9 16 16 C 1.53655 * 116.40300 * 141.28540 * 14 13 12 17 17 C 1.54601 * 102.73280 * 162.91758 * 16 14 13 18 18 N 1.47129 * 107.36661 * 339.24392 * 17 16 14 19 19 C 1.36939 * 125.58754 * 179.09736 * 18 17 16 20 20 H 1.08002 * 120.00042 * 174.73740 * 19 18 17 21 21 C 1.38812 * 120.00075 * 354.74968 * 19 18 17 22 22 N 1.31621 * 119.99787 * 7.04863 * 21 19 18 23 23 Si 1.86795 * 120.00202 * 187.05518 * 21 19 18 24 24 H 1.48495 * 109.47441 * 94.98174 * 23 21 19 25 25 H 1.48501 * 109.47149 * 214.98614 * 23 21 19 26 26 H 1.48503 * 109.47178 * 334.98389 * 23 21 19 27 27 C 1.47730 * 108.82672 * 359.07727 * 18 17 16 28 28 N 1.30714 * 125.52336 * 180.28927 * 2 1 3 29 29 H 1.08995 * 109.47189 * 90.01764 * 1 2 3 30 30 H 1.08996 * 109.47340 * 210.02588 * 1 2 3 31 31 H 1.09004 * 109.47050 * 330.02123 * 1 2 3 32 32 H 1.08999 * 109.47315 * 270.04042 * 5 4 3 33 33 H 1.09007 * 109.47071 * 30.04337 * 5 4 3 34 34 H 1.09002 * 109.47473 * 150.03750 * 5 4 3 35 35 H 1.09002 * 109.47163 * 329.99885 * 7 6 4 36 36 H 1.08998 * 109.46908 * 210.00296 * 7 6 4 37 37 H 1.09002 * 109.46850 * 59.99934 * 8 7 6 38 38 H 1.08999 * 109.47209 * 299.99715 * 8 7 6 39 39 H 1.09002 * 109.46682 * 60.00315 * 9 8 7 40 40 H 1.08999 * 109.47017 * 300.00001 * 9 8 7 41 41 H 1.09002 * 113.85293 * 42.30695 * 13 12 10 42 42 H 1.09004 * 113.85082 * 270.77399 * 13 12 10 43 43 H 1.09000 * 113.74175 * 89.28619 * 15 12 10 44 44 H 1.08998 * 114.04916 * 317.67031 * 15 12 10 45 45 H 1.09003 * 110.75720 * 281.22621 * 16 14 13 46 46 H 1.08994 * 110.75537 * 44.60267 * 16 14 13 47 47 H 1.08999 * 109.86731 * 98.69123 * 17 16 14 48 48 H 1.09008 * 109.86335 * 219.66488 * 17 16 14 49 49 H 0.97000 * 119.99886 * 179.97438 * 22 21 19 50 50 H 1.08999 * 110.39730 * 263.65866 * 27 18 17 51 51 H 1.09000 * 110.39953 * 141.24872 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0843 0.0000 4 6 3.5408 0.7303 -0.0006 5 6 4.7228 1.6651 -0.0013 6 7 3.5965 -0.6129 -0.0003 7 6 4.8046 -1.4415 -0.0013 8 6 5.2267 -1.7297 1.4408 9 6 6.4881 -2.5956 1.4397 10 6 6.9034 -2.8800 2.8601 11 8 6.2541 -2.4344 3.7826 12 7 7.9963 -3.6295 3.1055 13 6 8.6756 -4.0956 4.3337 14 6 9.2362 -5.2132 3.4630 15 6 8.9950 -4.3174 2.2543 16 6 10.6930 -5.6222 3.7303 17 6 10.7914 -7.0025 3.0409 18 7 9.4221 -7.5225 2.9018 19 6 9.0774 -8.7150 2.3235 20 1 8.0504 -9.0486 2.3448 21 6 10.0480 -9.4952 1.7102 22 7 11.3174 -9.1602 1.8037 23 14 9.5525 -11.0202 0.7520 24 1 9.4213 -10.6795 -0.6874 25 1 10.5902 -12.0691 0.9199 26 1 8.2520 -11.5243 1.2618 27 6 8.4800 -6.5476 3.4887 28 7 2.2665 -1.0638 -0.0054 29 1 -0.3633 -0.0003 -1.0276 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 5.0069 1.8908 -1.0291 33 1 4.4562 2.5883 0.5132 34 1 5.5604 1.1922 0.5116 35 1 5.6072 -0.9132 -0.5160 36 1 4.6004 -2.3810 -0.5148 37 1 4.4241 -2.2580 1.9555 38 1 5.4310 -0.7901 1.9542 39 1 7.2908 -2.0676 0.9248 40 1 6.2834 -3.5351 0.9264 41 1 7.9936 -4.4417 5.1103 42 1 9.4327 -3.4061 4.7073 43 1 9.8495 -3.6946 1.9898 44 1 8.5658 -4.8381 1.3984 45 1 11.3834 -4.9126 3.2742 46 1 10.8792 -5.7107 4.8005 47 1 11.2479 -6.8936 2.0571 48 1 11.3869 -7.6804 3.6525 49 1 11.9957 -9.7056 1.3754 50 1 8.2351 -6.8258 4.5138 51 1 7.5748 -6.4831 2.8850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148571395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:58 Heat of formation + Delta-G solvation = 83.887055 kcal Electronic energy + Delta-G solvation = -29996.891602 eV Core-core repulsion = 25933.975189 eV Total energy + Delta-G solvation = -4062.916413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.14783 -41.76015 -39.75241 -37.26931 -36.72630 -34.18246 -34.04544 -33.28328 -31.49292 -30.59039 -29.99782 -29.12734 -27.77997 -27.32843 -26.69505 -25.21872 -23.20400 -22.09163 -21.74207 -21.43440 -20.41809 -19.53134 -18.80207 -18.13540 -17.62093 -17.11121 -16.95644 -16.86628 -16.59788 -16.06423 -15.81420 -15.57148 -15.37054 -14.95445 -14.47776 -14.44249 -14.22674 -14.11650 -13.95689 -13.68347 -13.65999 -13.62648 -13.35579 -13.19693 -13.13430 -13.00099 -12.86256 -12.80586 -12.73787 -12.55282 -12.39967 -12.01508 -11.93444 -11.89088 -11.74103 -11.68048 -11.27019 -11.05317 -10.82047 -10.70175 -10.64260 -10.31992 -9.70170 -8.86843 -7.85000 -5.18360 0.56578 1.30977 1.47292 1.47535 1.56467 1.61902 1.82348 1.84524 2.49514 3.11770 3.24339 3.33278 3.42846 3.47083 3.67720 3.70673 3.74764 3.87825 3.95100 4.04816 4.16478 4.21198 4.30909 4.34823 4.49158 4.51458 4.56843 4.62087 4.65190 4.67320 4.70075 4.73693 4.78475 4.81850 4.87844 4.89105 4.95818 4.98898 5.01185 5.11323 5.13767 5.15262 5.24431 5.34573 5.48089 5.48715 5.73661 5.83986 5.90033 6.22593 6.71964 7.08960 7.11756 7.13295 7.79223 8.43258 9.25070 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013838 B = 0.001977 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.888274 B =14161.177575 C =15371.988637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.204 3.796 3 N -0.577 5.577 4 C 0.276 3.724 5 C -0.078 4.078 6 N -0.381 5.381 7 C 0.126 3.874 8 C -0.106 4.106 9 C -0.123 4.123 10 C 0.527 3.473 11 O -0.596 6.596 12 N -0.642 5.642 13 C 0.126 3.874 14 C -0.100 4.100 15 C 0.132 3.868 16 C -0.112 4.112 17 C 0.183 3.817 18 N -0.624 5.624 19 C -0.242 4.242 20 H 0.075 0.925 21 C -0.059 4.059 22 N -0.944 5.944 23 Si 0.971 3.029 24 H -0.284 1.284 25 H -0.296 1.296 26 H -0.274 1.274 27 C 0.158 3.842 28 N -0.358 5.358 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.103 0.897 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.136 0.864 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.021 0.979 48 H 0.000 1.000 49 H 0.247 0.753 50 H 0.017 0.983 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 22.640 -5.158 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 N -0.307 5.307 4 C 0.000 4.000 5 C -0.136 4.136 6 N -0.172 5.172 7 C 0.005 3.995 8 C -0.145 4.145 9 C -0.163 4.163 10 C 0.319 3.681 11 O -0.478 6.478 12 N -0.377 5.377 13 C 0.003 3.997 14 C -0.102 4.102 15 C 0.010 3.990 16 C -0.151 4.151 17 C 0.058 3.942 18 N -0.350 5.350 19 C -0.371 4.371 20 H 0.092 0.908 21 C -0.253 4.253 22 N -0.593 5.593 23 Si 0.800 3.200 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.199 1.199 27 C 0.033 3.967 28 N -0.187 5.187 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.160 0.840 36 H 0.122 0.878 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.127 0.873 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.101 0.899 45 H 0.117 0.883 46 H 0.094 0.906 47 H 0.039 0.961 48 H 0.019 0.981 49 H 0.057 0.943 50 H 0.035 0.965 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.780 22.349 -4.834 24.493 hybrid contribution -0.025 -1.610 -0.089 1.613 sum -8.804 20.739 -4.924 23.062 Atomic orbital electron populations 1.20205 0.81975 1.04631 1.04678 1.24963 0.99753 0.85621 0.97481 1.70360 1.01027 1.31576 1.27738 1.25234 0.96020 0.84321 0.94421 1.20660 0.90062 0.96752 1.06163 1.50492 1.05821 1.06082 1.54763 1.22108 0.82614 0.96952 0.97813 1.21523 0.96795 1.00576 0.95625 1.21516 0.99307 1.03067 0.92375 1.20910 0.78850 0.75867 0.92480 1.90690 1.54953 1.53689 1.48500 1.50360 1.25484 1.50567 1.11253 1.23013 0.94623 0.92894 0.89156 1.22279 0.96870 0.93564 0.97466 1.23194 0.90392 0.90892 0.94483 1.22516 0.94486 0.96861 1.01193 1.21019 0.85366 0.90980 0.96820 1.44836 1.02814 1.18614 1.68775 1.19344 0.94032 0.95951 1.27756 0.90753 1.25545 0.95480 1.02199 1.02054 1.70168 0.99527 1.41005 1.48586 0.85168 0.77018 0.78966 0.78829 1.21121 1.22259 1.19892 1.21132 0.92348 0.87665 0.95542 1.77958 0.88187 1.23848 1.28714 0.88567 0.89596 0.88761 0.86790 0.88078 0.87813 0.83988 0.87838 0.93937 0.91072 0.84560 0.87347 0.91290 0.86818 0.86087 0.89856 0.88348 0.90600 0.96056 0.98131 0.94332 0.96520 0.94789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.51 71.23 0.75 -0.15 16 2 C 0.20 5.01 8.14 138.63 1.13 6.14 16 3 N -0.58 -14.16 11.19 -179.73 -2.01 -16.17 16 4 C 0.28 5.36 7.98 138.22 1.10 6.47 16 5 C -0.08 -0.66 10.01 71.24 0.71 0.05 16 6 N -0.38 -7.98 3.64 -338.50 -1.23 -9.21 16 7 C 0.13 1.68 6.13 86.38 0.53 2.21 16 8 C -0.11 -1.87 4.83 30.60 0.15 -1.73 16 9 C -0.12 -1.91 5.45 29.85 0.16 -1.74 16 10 C 0.53 13.47 8.06 87.66 0.71 14.18 16 11 O -0.60 -20.60 16.71 -3.06 -0.05 -20.65 16 12 N -0.64 -15.48 3.63 -859.14 -3.12 -18.60 16 13 C 0.13 3.02 8.20 85.90 0.70 3.73 16 14 C -0.10 -2.81 0.99 -52.18 -0.05 -2.86 16 15 C 0.13 2.91 7.93 85.85 0.68 3.60 16 16 C -0.11 -3.33 6.36 31.36 0.20 -3.13 16 17 C 0.18 8.18 5.40 86.80 0.47 8.65 16 18 N -0.62 -30.13 3.41 -693.34 -2.36 -32.50 16 19 C -0.24 -13.12 10.26 84.03 0.86 -12.26 16 20 H 0.07 3.95 7.84 -2.91 -0.02 3.93 16 21 C -0.06 -3.26 5.48 84.86 0.46 -2.79 16 22 N -0.94 -54.34 10.35 21.65 0.22 -54.12 16 23 Si 0.97 44.55 29.56 68.60 2.03 46.58 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 C 0.16 6.07 6.63 86.28 0.57 6.64 16 28 N -0.36 -9.58 12.70 -51.34 -0.65 -10.23 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.10 0.48 7.76 -2.39 -0.02 0.46 16 35 H 0.14 0.68 7.72 -2.39 -0.02 0.66 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 38 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 39 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 42 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.12 1.94 8.04 -2.39 -0.02 1.92 16 44 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 45 H 0.10 2.31 7.99 -2.39 -0.02 2.29 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.02 1.06 7.30 -2.39 -0.02 1.04 16 48 H 0.00 0.02 7.60 -2.38 -0.02 0.00 16 49 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 50 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 Total: -1.00 -82.51 417.49 2.87 -79.63 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.91 Total: 8.25 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 9.14 Total: 27.01 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -9.15 Total: -140.82 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -82.51 2.87 -79.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148571395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.520 kcal (2) G-P(sol) polarization free energy of solvation -82.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds