Wall clock time and date at job start Wed Apr 1 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33473 * 125.49720 * 2 1 4 4 C 1.30332 * 109.72609 * 180.02562 * 3 2 1 5 5 N 1.34672 * 108.04456 * 0.06874 * 4 3 2 6 6 N 1.30973 * 125.49803 * 180.02562 * 2 1 3 7 7 C 1.46297 * 125.04278 * 179.87220 * 5 4 3 8 8 C 1.53302 * 108.77712 * 342.98496 * 7 5 4 9 9 H 1.09005 * 109.46291 * 290.12410 * 8 7 5 10 10 C 1.50705 * 109.46823 * 170.13756 * 8 7 5 11 11 O 1.21278 * 119.99544 * 239.97917 * 10 8 7 12 12 N 1.34774 * 120.00124 * 59.98530 * 10 8 7 13 13 C 1.46496 * 119.99923 * 175.15688 * 12 10 8 14 14 C 1.53005 * 109.47207 * 184.96638 * 13 12 10 15 15 C 1.53002 * 109.47052 * 183.90902 * 14 13 12 16 16 C 1.52994 * 115.54900 * 65.32931 * 15 14 13 17 17 N 1.46489 * 109.47420 * 65.07175 * 16 15 14 18 18 C 1.36943 * 120.00081 * 185.04486 * 17 16 15 19 19 H 1.07998 * 119.99923 * 4.97584 * 18 17 16 20 20 C 1.38818 * 119.99945 * 184.97274 * 18 17 16 21 21 N 1.31616 * 119.99587 * 184.63578 * 20 18 17 22 22 Si 1.86797 * 119.99844 * 4.63497 * 20 18 17 23 23 H 1.48504 * 109.47013 * 94.09534 * 22 20 18 24 24 H 1.48506 * 109.47032 * 214.09236 * 22 20 18 25 25 H 1.48494 * 109.47454 * 334.09536 * 22 20 18 26 26 C 1.53001 * 117.49818 * 279.65361 * 15 14 13 27 27 C 1.53000 * 117.49433 * 210.99859 * 15 14 13 28 28 C 1.53151 * 109.48860 * 50.13076 * 8 7 5 29 29 C 1.50932 * 127.90049 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.47127 * 269.97138 * 1 2 3 31 31 H 1.09002 * 109.47241 * 29.96983 * 1 2 3 32 32 H 1.09000 * 109.47373 * 149.97314 * 1 2 3 33 33 H 1.09007 * 109.58837 * 223.19332 * 7 5 4 34 34 H 1.09005 * 109.70497 * 102.84722 * 7 5 4 35 35 H 0.97001 * 120.00063 * 355.15431 * 12 10 8 36 36 H 1.08998 * 109.47083 * 304.96776 * 13 12 10 37 37 H 1.08999 * 109.47456 * 64.96769 * 13 12 10 38 38 H 1.09001 * 109.47182 * 303.91044 * 14 13 12 39 39 H 1.09000 * 109.46937 * 63.90909 * 14 13 12 40 40 H 1.09009 * 109.46831 * 185.07303 * 16 15 14 41 41 H 1.08999 * 109.46963 * 305.06247 * 16 15 14 42 42 H 0.96999 * 120.00457 * 5.04067 * 17 16 15 43 43 H 0.97000 * 119.99528 * 179.97438 * 21 20 18 44 44 H 1.08997 * 117.49672 * 0.02562 * 26 15 14 45 45 H 1.08999 * 117.49976 * 145.02089 * 26 15 14 46 46 H 1.09003 * 117.49562 * 214.98186 * 27 15 14 47 47 H 1.09001 * 117.50223 * 359.97438 * 27 15 14 48 48 H 1.08996 * 109.51068 * 170.88929 * 28 8 7 49 49 H 1.09003 * 109.54182 * 50.77328 * 28 8 7 50 50 H 1.08996 * 109.71955 * 283.72318 * 29 4 3 51 51 H 1.08999 * 109.71517 * 44.32976 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7324 -0.0005 5 7 3.5896 -0.6132 -0.0025 6 7 2.2675 -1.0663 -0.0005 7 6 4.8198 -1.4051 -0.0063 8 6 5.9850 -0.5046 -0.4325 9 1 5.8834 -0.2547 -1.4886 10 6 7.2873 -1.2298 -0.2110 11 8 8.1201 -0.7653 0.5384 12 7 7.5265 -2.3944 -0.8456 13 6 8.8322 -3.0456 -0.7141 14 6 8.8832 -4.2747 -1.6239 15 6 10.2087 -5.0096 -1.4144 16 6 10.4100 -5.6250 -0.0282 17 7 9.4242 -6.6880 0.1821 18 6 9.3431 -7.3162 1.3962 19 1 9.9491 -6.9749 2.2224 20 6 8.4817 -8.3917 1.5651 21 7 8.3356 -8.9373 2.7539 22 14 7.5302 -9.0643 0.1051 23 1 8.2829 -10.1931 -0.4987 24 1 6.1999 -9.5432 0.5594 25 1 7.3514 -7.9916 -0.9060 26 6 11.4438 -4.4562 -2.1279 27 6 10.7987 -5.7573 -2.6118 28 6 5.9684 0.7807 0.4002 29 6 4.7522 1.6266 -0.0002 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 4.7202 -2.2315 -0.7101 34 1 5.0076 -1.7972 0.9933 35 1 6.8341 -2.8015 -1.3895 36 1 9.6174 -2.3469 -1.0029 37 1 8.9823 -3.3532 0.3208 38 1 8.0557 -4.9412 -1.3809 39 1 8.8027 -3.9600 -2.6644 40 1 11.4147 -6.0421 0.0417 41 1 10.2825 -4.8553 0.7330 42 1 8.8288 -6.9469 -0.5386 43 1 7.7335 -9.6886 2.8719 44 1 11.3122 -3.5683 -2.7462 45 1 12.3999 -4.5308 -1.6099 46 1 11.3307 -6.6874 -2.4119 47 1 10.2425 -5.7259 -3.5487 48 1 6.8816 1.3463 0.2149 49 1 5.9047 0.5286 1.4587 50 1 4.9040 2.0412 -0.9967 51 1 4.6138 2.4352 0.7174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166330366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:54 Heat of formation + Delta-G solvation = 77.619846 kcal Electronic energy + Delta-G solvation = -30261.297266 eV Core-core repulsion = 26198.109087 eV Total energy + Delta-G solvation = -4063.188180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.66502 -40.30435 -38.54827 -37.00186 -35.13742 -34.09920 -33.56347 -32.41369 -31.17458 -30.69525 -29.61625 -28.61201 -26.36611 -24.83044 -24.26870 -23.00149 -22.44892 -21.81939 -21.17329 -20.77716 -19.80835 -18.88857 -17.72865 -17.35245 -17.04062 -16.44107 -16.14318 -15.82561 -15.34447 -15.11222 -14.68243 -14.66619 -14.56084 -14.36571 -14.12741 -13.70289 -13.53620 -13.37236 -13.05507 -12.88545 -12.75982 -12.67606 -12.46317 -12.25993 -12.11488 -12.07108 -11.75228 -11.67429 -11.40475 -11.34322 -11.27131 -10.95815 -10.80556 -10.33835 -10.23326 -10.07561 -9.99462 -9.93822 -9.66595 -9.57166 -9.53636 -9.23147 -8.90514 -7.23884 -5.79679 -3.14727 1.31314 1.82142 2.34310 2.58428 2.83776 3.30594 3.36596 3.41970 3.55861 3.77067 3.86541 4.03182 4.07773 4.35951 4.45541 4.55429 4.62736 4.76272 4.78121 4.80079 4.87840 4.93782 4.95939 5.07113 5.10851 5.24096 5.26351 5.31915 5.44716 5.46795 5.47327 5.52404 5.52531 5.58183 5.65510 5.73683 5.78543 5.98602 6.02772 6.05421 6.17994 6.19262 6.24247 6.25417 6.28824 6.45674 6.62774 6.67365 7.20803 7.84750 7.91020 7.98558 8.39851 9.19916 9.91681 10.12834 11.38812 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009870 B = 0.002537 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.300776 B =11032.443818 C =12850.499747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.216 3.784 3 N -0.539 5.539 4 C 0.278 3.722 5 N -0.375 5.375 6 N -0.311 5.311 7 C 0.136 3.864 8 C -0.124 4.124 9 H 0.112 0.888 10 C 0.523 3.477 11 O -0.524 6.524 12 N -0.725 5.725 13 C 0.121 3.879 14 C -0.089 4.089 15 C -0.127 4.127 16 C 0.191 3.809 17 N -0.752 5.752 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.888 3.112 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.279 1.279 26 C -0.172 4.172 27 C -0.169 4.169 28 C -0.109 4.109 29 C -0.041 4.041 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.399 0.601 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.035 0.965 42 H 0.363 0.637 43 H 0.259 0.741 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.101 0.899 49 H 0.082 0.918 50 H 0.102 0.898 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 21.753 -12.651 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.066 4.066 3 N -0.267 5.267 4 C 0.002 3.998 5 N -0.166 5.166 6 N -0.140 5.140 7 C 0.014 3.986 8 C -0.146 4.146 9 H 0.130 0.870 10 C 0.307 3.693 11 O -0.400 6.400 12 N -0.376 5.376 13 C -0.001 4.001 14 C -0.127 4.127 15 C -0.128 4.128 16 C 0.064 3.936 17 N -0.398 5.398 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.581 5.581 22 Si 0.718 3.282 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.209 4.209 27 C -0.206 4.206 28 C -0.147 4.147 29 C -0.080 4.080 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.196 0.804 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.107 0.893 48 H 0.119 0.881 49 H 0.101 0.899 50 H 0.120 0.880 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.926 21.532 -11.862 25.540 hybrid contribution -0.854 -1.037 -1.262 1.843 sum -7.781 20.494 -13.124 25.550 Atomic orbital electron populations 1.20084 0.83807 1.03982 1.03772 1.24449 0.98293 0.85483 0.98350 1.70186 0.99820 1.30832 1.25861 1.24355 0.95084 0.83961 0.96442 1.50097 1.05583 1.05823 1.55049 1.78004 0.86384 1.22441 1.27145 1.21761 0.78430 0.93508 1.04949 1.21764 0.92365 0.96878 1.03636 0.87027 1.19936 0.87923 0.81146 0.80310 1.90758 1.47313 1.66441 1.35454 1.46083 1.17024 1.23273 1.51222 1.21446 0.83335 0.93633 1.01734 1.21225 0.97377 0.95596 0.98515 1.21627 0.93275 1.02490 0.95400 1.20177 0.92818 0.90369 0.90275 1.42717 1.41117 1.42567 1.13416 1.19054 1.20672 1.09237 0.88309 0.89338 1.24695 0.99791 0.98403 0.96274 1.69711 1.41000 1.26536 1.20852 0.86504 0.79689 0.79054 0.82911 1.21203 1.21836 1.20576 1.22987 0.97011 0.97290 1.03621 1.22992 1.03848 0.96289 0.97494 1.21602 0.98626 0.93855 1.00646 1.20455 0.86598 0.96029 1.04949 0.89842 0.89596 0.89988 0.87944 0.88318 0.76645 0.91205 0.90143 0.90296 0.91857 0.95691 0.94676 0.80380 0.93066 0.89151 0.88665 0.88432 0.89305 0.88070 0.89894 0.88016 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.00 0.38 -0.07 16 2 C 0.22 2.58 8.15 -156.43 -1.27 1.30 16 3 N -0.54 -6.57 11.18 -8.03 -0.09 -6.66 16 4 C 0.28 2.91 7.72 -155.78 -1.20 1.71 16 5 N -0.37 -4.19 4.04 -58.29 -0.24 -4.43 16 6 N -0.31 -4.10 12.74 32.50 0.41 -3.68 16 7 C 0.14 1.20 6.40 -4.00 -0.03 1.17 16 8 C -0.12 -0.92 2.55 -91.54 -0.23 -1.15 16 9 H 0.11 0.61 8.12 -51.93 -0.42 0.19 16 10 C 0.52 5.45 7.13 -10.98 -0.08 5.38 16 11 O -0.52 -7.50 15.84 5.56 0.09 -7.41 16 12 N -0.72 -7.09 5.48 -60.29 -0.33 -7.42 16 13 C 0.12 1.46 5.58 -4.04 -0.02 1.44 16 14 C -0.09 -1.07 5.13 -26.73 -0.14 -1.21 16 15 C -0.13 -1.77 1.53 -154.51 -0.24 -2.00 16 16 C 0.19 3.53 5.92 -4.05 -0.02 3.50 16 17 N -0.75 -17.16 5.23 -59.91 -0.31 -17.48 16 18 C -0.24 -6.77 10.47 -15.05 -0.16 -6.92 16 19 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 22 Si 0.89 21.84 28.00 -169.99 -4.76 17.09 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.29 6.17 56.52 0.35 -5.94 16 26 C -0.17 -1.97 9.94 -26.69 -0.27 -2.23 16 27 C -0.17 -2.15 9.94 -26.70 -0.27 -2.42 16 28 C -0.11 -0.77 4.68 -26.42 -0.12 -0.90 16 29 C -0.04 -0.26 6.33 -27.53 -0.17 -0.44 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.77 7.78 -51.93 -0.40 0.37 16 34 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.40 2.94 8.00 -40.82 -0.33 2.62 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.22 6.82 -51.93 -0.35 0.86 16 38 H 0.08 1.08 7.73 -51.93 -0.40 0.68 16 39 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.03 0.48 8.09 -51.92 -0.42 0.06 16 41 H 0.04 0.67 6.89 -51.93 -0.36 0.32 16 42 H 0.36 8.09 5.07 -40.82 -0.21 7.88 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.10 0.68 7.80 -51.93 -0.41 0.27 16 49 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 412.80 15.07 6.22 6.22 Total: -1.00 -36.43 412.80 -10.57 -47.00 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.40 Total: 8.03 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.94 Total: -2.82 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: 0.22 Total: -68.11 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.76 Total: 17.09 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.43 -10.57 -47.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166330366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.623 kcal (2) G-P(sol) polarization free energy of solvation -36.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds