Wall clock time and date at job start Wed Apr 1 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30841 * 126.46295 * 2 1 4 4 N 1.28906 * 109.74186 * 179.97438 * 3 2 1 5 5 C 1.29843 * 109.47693 * 359.97438 * 4 3 2 6 6 N 1.34690 * 126.46577 * 179.97438 * 2 1 3 7 7 C 1.46254 * 128.84907 * 0.38780 * 6 2 1 8 8 C 1.53200 * 108.78971 * 162.97939 * 7 6 2 9 9 H 1.09004 * 109.29518 * 290.04744 * 8 7 6 10 10 C 1.50705 * 109.49267 * 170.16838 * 8 7 6 11 11 O 1.21285 * 119.99963 * 359.74187 * 10 8 7 12 12 N 1.34773 * 120.00294 * 179.74142 * 10 8 7 13 13 C 1.46496 * 120.00251 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47302 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47015 * 174.93445 * 14 13 12 16 16 C 1.53002 * 115.55210 * 65.29337 * 15 14 13 17 17 N 1.46494 * 109.47344 * 65.14520 * 16 15 14 18 18 C 1.36936 * 120.00237 * 175.04481 * 17 16 15 19 19 H 1.08005 * 119.99381 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00353 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00021 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99945 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47452 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46879 * 120.00475 * 22 20 18 25 25 H 1.48497 * 109.47525 * 240.00027 * 22 20 18 26 26 C 1.52994 * 117.49699 * 279.61447 * 15 14 13 27 27 C 1.53005 * 117.49487 * 210.95667 * 15 14 13 28 28 C 1.53142 * 109.68462 * 50.04985 * 8 7 6 29 29 C 1.50801 * 128.52450 * 180.15439 * 5 4 3 30 30 H 1.09002 * 109.46944 * 270.03989 * 1 2 3 31 31 H 1.08994 * 109.46982 * 30.04000 * 1 2 3 32 32 H 1.08997 * 109.47019 * 150.04455 * 1 2 3 33 33 H 1.08997 * 109.59734 * 282.67162 * 7 6 2 34 34 H 1.09009 * 109.58992 * 43.12184 * 7 6 2 35 35 H 0.97003 * 119.99515 * 359.97438 * 12 10 8 36 36 H 1.09001 * 109.47079 * 300.00245 * 13 12 10 37 37 H 1.08998 * 109.47320 * 59.99814 * 13 12 10 38 38 H 1.09002 * 109.46981 * 294.93343 * 14 13 12 39 39 H 1.08997 * 109.47574 * 54.92962 * 14 13 12 40 40 H 1.08995 * 109.47147 * 185.14909 * 16 15 14 41 41 H 1.09001 * 109.46486 * 305.14415 * 16 15 14 42 42 H 0.97005 * 120.00376 * 355.04577 * 17 16 15 43 43 H 0.97003 * 119.99863 * 180.02562 * 21 20 18 44 44 H 1.09000 * 117.49791 * 0.02562 * 26 15 14 45 45 H 1.08999 * 117.49644 * 145.02092 * 26 15 14 46 46 H 1.08992 * 117.49802 * 214.97601 * 27 15 14 47 47 H 1.08996 * 117.49776 * 0.02562 * 27 15 14 48 48 H 1.08993 * 109.50115 * 170.72396 * 28 8 7 49 49 H 1.09000 * 109.52421 * 50.63359 * 28 8 7 50 50 H 1.09007 * 109.72290 * 283.73676 * 29 5 4 51 51 H 1.09000 * 109.73340 * 44.36419 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6814 0.0005 5 6 3.5816 -0.6155 0.0015 6 7 2.3076 -1.0832 0.0005 7 6 1.9368 -2.4979 -0.0066 8 6 3.1556 -3.3253 -0.4275 9 1 3.3634 -3.1493 -1.4829 10 6 2.8694 -4.7888 -0.2097 11 8 1.7989 -5.1367 0.2422 12 7 3.8028 -5.7111 -0.5170 13 6 3.5244 -7.1338 -0.3058 14 6 4.7392 -7.9601 -0.7328 15 6 4.4982 -9.4329 -0.3956 16 6 3.3606 -10.1083 -1.1641 17 7 3.6992 -10.1646 -2.5883 18 6 2.8738 -10.8191 -3.4631 19 1 1.9728 -11.2935 -3.1031 20 6 3.1944 -10.8720 -4.8126 21 7 4.2922 -10.2933 -5.2513 22 14 2.0686 -11.7655 -6.0057 23 1 0.9094 -12.3269 -5.2667 24 1 1.5836 -10.8128 -7.0365 25 1 2.8175 -12.8666 -6.6628 26 6 4.7336 -9.8742 1.0503 27 6 5.7189 -10.2865 -0.0461 28 6 4.3717 -2.9138 0.4074 29 6 4.8052 -1.4970 0.0055 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3633 -0.8904 -0.5131 33 1 1.6208 -2.7981 0.9925 34 1 1.1229 -2.6589 -0.7136 35 1 4.6588 -5.4329 -0.8788 36 1 3.3169 -7.3106 0.7495 37 1 2.6590 -7.4268 -0.9002 38 1 4.8918 -7.8535 -1.8068 39 1 5.6237 -7.6062 -0.2033 40 1 3.2162 -11.1199 -0.7848 41 1 2.4425 -9.5359 -1.0313 42 1 4.5083 -9.7381 -2.9117 43 1 4.5160 -10.3300 -6.1945 44 1 5.0597 -9.1152 1.7614 45 1 4.0781 -10.6459 1.4540 46 1 5.7114 -11.3292 -0.3633 47 1 6.6936 -9.7987 -0.0561 48 1 5.1905 -3.6098 0.2252 49 1 4.1095 -2.9294 1.4652 50 1 5.2490 -1.5149 -0.9899 51 1 5.5304 -1.1166 0.7248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168290307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:28 Heat of formation + Delta-G solvation = 63.294299 kcal Electronic energy + Delta-G solvation = -30188.748880 eV Core-core repulsion = 26124.939498 eV Total energy + Delta-G solvation = -4063.809382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.62813 -40.36403 -38.44032 -37.16134 -35.15610 -34.44864 -33.97609 -32.11173 -30.97399 -30.82160 -29.91181 -27.69475 -26.10259 -25.46077 -23.82924 -23.16572 -22.78445 -21.93375 -21.68255 -20.92048 -19.93923 -18.66605 -17.77518 -17.11411 -16.99704 -16.47736 -16.27966 -15.86951 -15.36420 -15.21353 -14.75781 -14.57767 -14.53574 -14.31799 -14.18223 -13.86288 -13.50644 -13.39489 -13.16635 -13.00982 -12.73508 -12.66553 -12.59372 -12.40022 -12.07411 -11.86686 -11.74249 -11.55151 -11.46386 -11.27810 -11.03158 -10.89640 -10.68089 -10.60355 -10.43854 -10.19392 -10.07223 -9.96743 -9.75819 -9.38741 -9.26446 -9.21963 -8.89920 -6.95314 -5.81458 -3.09232 1.49624 2.02848 2.28869 2.57413 2.88264 3.39631 3.45931 3.47671 3.62793 3.84271 3.96517 4.01396 4.04113 4.14381 4.49582 4.56252 4.57210 4.64057 4.72324 4.83453 4.89108 4.98840 5.03239 5.07165 5.09007 5.13964 5.21170 5.21844 5.33981 5.42375 5.43826 5.49177 5.52109 5.60878 5.65927 5.66704 5.82264 5.88648 6.02653 6.08421 6.14802 6.26772 6.34891 6.39278 6.43214 6.52688 6.69545 6.76067 7.22175 7.66551 7.90927 8.37820 8.46147 9.49675 10.07337 10.42765 11.41474 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.002119 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.686573 B =13207.504561 C =14411.900292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.180 3.820 3 N -0.301 5.301 4 N -0.290 5.290 5 C 0.171 3.829 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.125 4.125 9 H 0.113 0.887 10 C 0.524 3.476 11 O -0.536 6.536 12 N -0.720 5.720 13 C 0.123 3.877 14 C -0.088 4.088 15 C -0.120 4.120 16 C 0.186 3.814 17 N -0.727 5.727 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.178 4.178 27 C -0.163 4.163 28 C -0.118 4.118 29 C -0.031 4.031 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 15.713 14.462 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 N -0.142 5.142 4 N -0.130 5.130 5 C -0.097 4.097 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.147 4.147 9 H 0.131 0.869 10 C 0.308 3.692 11 O -0.413 6.413 12 N -0.370 5.370 13 C 0.000 4.000 14 C -0.126 4.126 15 C -0.121 4.121 16 C 0.059 3.941 17 N -0.371 5.371 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.215 4.215 27 C -0.200 4.200 28 C -0.156 4.156 29 C -0.071 4.071 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.115 0.885 47 H 0.107 0.893 48 H 0.112 0.888 49 H 0.099 0.901 50 H 0.118 0.882 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.324 16.781 14.724 22.327 hybrid contribution -0.301 -1.667 -1.138 2.040 sum 0.023 15.114 13.586 20.323 Atomic orbital electron populations 1.20241 0.83602 1.04690 1.04187 1.24696 0.97161 0.82674 1.04154 1.74493 0.96099 1.23660 1.19908 1.74044 1.12350 1.08025 1.18549 1.24701 0.87056 0.92618 1.05284 1.45999 1.07005 1.08482 1.54537 1.21742 0.97645 0.75229 1.05318 1.21618 0.96355 0.93061 1.03646 0.86885 1.19938 0.84330 0.86852 0.78100 1.90755 1.24042 1.81907 1.44618 1.45993 1.18235 1.07414 1.65378 1.21445 0.99355 0.77665 1.01547 1.21217 0.96193 0.92391 1.02817 1.21551 0.99580 0.94058 0.96913 1.20199 0.92513 0.95998 0.85392 1.42286 1.27975 1.65923 1.00954 1.19274 1.02620 1.26366 0.88567 0.91212 1.24714 0.97870 1.01389 0.97009 1.69664 1.25322 1.49055 1.14195 0.86139 0.79845 0.79025 0.81335 1.20571 1.21899 1.21875 1.23005 1.03701 1.03502 0.91324 1.22940 0.93740 1.00929 1.02364 1.21752 0.96763 0.96551 1.00532 1.20238 0.91238 0.90829 1.04778 0.89475 0.88600 0.90227 0.87857 0.87756 0.76467 0.91416 0.90310 0.89813 0.91963 0.95942 0.96115 0.78207 0.93619 0.89326 0.88953 0.88516 0.89328 0.88812 0.90111 0.88191 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.29 36.01 0.37 -0.06 16 2 C 0.18 1.88 8.07 -155.45 -1.25 0.63 16 3 N -0.30 -4.10 12.23 32.70 0.40 -3.70 16 4 N -0.29 -3.93 12.21 32.76 0.40 -3.53 16 5 C 0.17 1.74 7.75 -155.29 -1.20 0.54 16 6 N -0.47 -4.42 3.11 -110.93 -0.35 -4.77 16 7 C 0.12 0.96 5.48 -4.07 -0.02 0.93 16 8 C -0.12 -0.87 2.52 -91.59 -0.23 -1.10 16 9 H 0.11 0.70 8.12 -51.93 -0.42 0.27 16 10 C 0.52 5.28 7.15 -10.98 -0.08 5.20 16 11 O -0.54 -7.50 15.82 5.55 0.09 -7.41 16 12 N -0.72 -6.78 5.38 -60.30 -0.32 -7.10 16 13 C 0.12 1.50 5.41 -4.04 -0.02 1.47 16 14 C -0.09 -1.10 5.12 -26.73 -0.14 -1.24 16 15 C -0.12 -1.75 1.56 -154.51 -0.24 -1.99 16 16 C 0.19 3.56 5.93 -4.04 -0.02 3.54 16 17 N -0.73 -17.47 5.52 -59.91 -0.33 -17.80 16 18 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 C -0.18 -2.14 9.94 -26.70 -0.27 -2.41 16 27 C -0.16 -2.21 9.94 -26.69 -0.27 -2.48 16 28 C -0.12 -0.60 5.23 -26.39 -0.14 -0.74 16 29 C -0.03 -0.19 6.34 -27.56 -0.17 -0.36 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.39 7.76 -51.93 -0.40 -0.01 16 33 H 0.10 0.82 7.78 -51.93 -0.40 0.42 16 34 H 0.10 0.76 7.85 -51.92 -0.41 0.35 16 35 H 0.40 2.68 7.81 -40.82 -0.32 2.36 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.22 7.23 -51.93 -0.38 0.84 16 38 H 0.08 1.23 7.49 -51.93 -0.39 0.84 16 39 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 41 H 0.02 0.41 7.11 -51.93 -0.37 0.04 16 42 H 0.38 9.64 7.03 -40.82 -0.29 9.35 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 47 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.09 0.30 7.32 -51.93 -0.38 -0.08 16 49 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 50 H 0.10 0.48 8.14 -51.92 -0.42 0.05 16 51 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 413.65 15.07 6.23 6.23 Total: -1.00 -35.61 413.65 -10.48 -46.09 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.37 Total: 6.78 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -3.93 Total: -5.15 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 0.52 Total: -63.60 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.61 -10.48 -46.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168290307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.380 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds