Wall clock time and date at job start Wed Apr 1 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30841 * 126.46295 * 2 1 4 4 N 1.28906 * 109.74186 * 179.97438 * 3 2 1 5 5 C 1.29843 * 109.47693 * 359.97438 * 4 3 2 6 6 N 1.34690 * 126.46577 * 179.97438 * 2 1 3 7 7 C 1.46254 * 128.84907 * 0.38780 * 6 2 1 8 8 C 1.53200 * 108.78971 * 162.97939 * 7 6 2 9 9 H 1.09004 * 109.29518 * 290.04744 * 8 7 6 10 10 C 1.50705 * 109.49267 * 170.16838 * 8 7 6 11 11 O 1.21285 * 119.99963 * 359.74187 * 10 8 7 12 12 N 1.34773 * 120.00294 * 179.74142 * 10 8 7 13 13 C 1.46496 * 120.00251 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47302 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47015 * 174.93445 * 14 13 12 16 16 C 1.53002 * 115.55210 * 65.29337 * 15 14 13 17 17 N 1.46494 * 109.47344 * 65.14520 * 16 15 14 18 18 C 1.36936 * 120.00237 * 175.04481 * 17 16 15 19 19 H 1.08005 * 119.99381 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00353 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00021 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99945 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47452 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46879 * 120.00475 * 22 20 18 25 25 H 1.48497 * 109.47525 * 240.00027 * 22 20 18 26 26 C 1.52994 * 117.49699 * 279.61447 * 15 14 13 27 27 C 1.53005 * 117.49487 * 210.95667 * 15 14 13 28 28 C 1.53142 * 109.68462 * 50.04985 * 8 7 6 29 29 C 1.50801 * 128.52450 * 180.15439 * 5 4 3 30 30 H 1.09002 * 109.46944 * 270.03989 * 1 2 3 31 31 H 1.08994 * 109.46982 * 30.04000 * 1 2 3 32 32 H 1.08997 * 109.47019 * 150.04455 * 1 2 3 33 33 H 1.08997 * 109.59734 * 282.67162 * 7 6 2 34 34 H 1.09009 * 109.58992 * 43.12184 * 7 6 2 35 35 H 0.97003 * 119.99515 * 359.97438 * 12 10 8 36 36 H 1.09001 * 109.47079 * 300.00245 * 13 12 10 37 37 H 1.08998 * 109.47320 * 59.99814 * 13 12 10 38 38 H 1.09002 * 109.46981 * 294.93343 * 14 13 12 39 39 H 1.08997 * 109.47574 * 54.92962 * 14 13 12 40 40 H 1.08995 * 109.47147 * 185.14909 * 16 15 14 41 41 H 1.09001 * 109.46486 * 305.14415 * 16 15 14 42 42 H 0.97005 * 120.00376 * 355.04577 * 17 16 15 43 43 H 0.97003 * 119.99863 * 180.02562 * 21 20 18 44 44 H 1.09000 * 117.49791 * 0.02562 * 26 15 14 45 45 H 1.08999 * 117.49644 * 145.02092 * 26 15 14 46 46 H 1.08992 * 117.49802 * 214.97601 * 27 15 14 47 47 H 1.08996 * 117.49776 * 0.02562 * 27 15 14 48 48 H 1.08993 * 109.50115 * 170.72396 * 28 8 7 49 49 H 1.09000 * 109.52421 * 50.63359 * 28 8 7 50 50 H 1.09007 * 109.72290 * 283.73676 * 29 5 4 51 51 H 1.09000 * 109.73340 * 44.36419 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6814 0.0005 5 6 3.5816 -0.6155 0.0015 6 7 2.3076 -1.0832 0.0005 7 6 1.9368 -2.4979 -0.0066 8 6 3.1556 -3.3253 -0.4275 9 1 3.3634 -3.1493 -1.4829 10 6 2.8694 -4.7888 -0.2097 11 8 1.7989 -5.1367 0.2422 12 7 3.8028 -5.7111 -0.5170 13 6 3.5244 -7.1338 -0.3058 14 6 4.7392 -7.9601 -0.7328 15 6 4.4982 -9.4329 -0.3956 16 6 3.3606 -10.1083 -1.1641 17 7 3.6992 -10.1646 -2.5883 18 6 2.8738 -10.8191 -3.4631 19 1 1.9728 -11.2935 -3.1031 20 6 3.1944 -10.8720 -4.8126 21 7 4.2922 -10.2933 -5.2513 22 14 2.0686 -11.7655 -6.0057 23 1 0.9094 -12.3269 -5.2667 24 1 1.5836 -10.8128 -7.0365 25 1 2.8175 -12.8666 -6.6628 26 6 4.7336 -9.8742 1.0503 27 6 5.7189 -10.2865 -0.0461 28 6 4.3717 -2.9138 0.4074 29 6 4.8052 -1.4970 0.0055 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3633 -0.8904 -0.5131 33 1 1.6208 -2.7981 0.9925 34 1 1.1229 -2.6589 -0.7136 35 1 4.6588 -5.4329 -0.8788 36 1 3.3169 -7.3106 0.7495 37 1 2.6590 -7.4268 -0.9002 38 1 4.8918 -7.8535 -1.8068 39 1 5.6237 -7.6062 -0.2033 40 1 3.2162 -11.1199 -0.7848 41 1 2.4425 -9.5359 -1.0313 42 1 4.5083 -9.7381 -2.9117 43 1 4.5160 -10.3300 -6.1945 44 1 5.0597 -9.1152 1.7614 45 1 4.0781 -10.6459 1.4540 46 1 5.7114 -11.3292 -0.3633 47 1 6.6936 -9.7987 -0.0561 48 1 5.1905 -3.6098 0.2252 49 1 4.1095 -2.9294 1.4652 50 1 5.2490 -1.5149 -0.9899 51 1 5.5304 -1.1166 0.7248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168290307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:27 Heat of formation + Delta-G solvation = 40.471407 kcal Electronic energy + Delta-G solvation = -30189.738555 eV Core-core repulsion = 26124.939498 eV Total energy + Delta-G solvation = -4064.799057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.38905 -41.18302 -39.57429 -37.87781 -36.15244 -35.78106 -35.12099 -32.84981 -32.75931 -31.56385 -30.83650 -28.35969 -27.78826 -26.28631 -24.63786 -24.51806 -24.00110 -22.98520 -22.42328 -21.74520 -20.62944 -19.90106 -19.03566 -18.51275 -17.70183 -17.24939 -17.12433 -16.86006 -16.56766 -16.19221 -16.03138 -15.60976 -15.31182 -15.20852 -15.08348 -14.88949 -14.69333 -14.51704 -14.17093 -13.98040 -13.87952 -13.49886 -13.23541 -13.20846 -13.13734 -13.01442 -12.83326 -12.63587 -12.47838 -12.26541 -12.25304 -12.12913 -12.07459 -11.93767 -11.79640 -11.39778 -11.18223 -11.13811 -10.96917 -10.85450 -10.53122 -10.11126 -10.04565 -8.96360 -7.95576 -5.22195 0.77531 1.33201 1.45741 1.46377 1.50746 1.55887 1.75258 2.11290 2.53741 2.93044 3.04424 3.24013 3.36796 3.38453 3.52002 3.55853 3.84523 3.85356 3.91890 3.99121 4.02270 4.09993 4.12386 4.22871 4.27531 4.30397 4.48052 4.51595 4.54491 4.61067 4.63960 4.67699 4.82277 4.83754 4.87105 4.94852 4.95043 4.98368 5.01572 5.03786 5.12086 5.21201 5.22334 5.29831 5.36488 5.39033 5.43821 5.49293 5.85595 6.27611 6.47848 7.15576 7.34997 7.65347 8.11768 8.37079 9.27782 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.002119 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.686573 B =13207.504561 C =14411.900292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.178 3.822 3 N -0.346 5.346 4 N -0.336 5.336 5 C 0.173 3.827 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.114 4.114 9 H 0.127 0.873 10 C 0.525 3.475 11 O -0.578 6.578 12 N -0.709 5.709 13 C 0.133 3.867 14 C -0.075 4.075 15 C -0.139 4.139 16 C 0.185 3.815 17 N -0.735 5.735 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.072 4.072 21 N -0.965 5.965 22 Si 0.967 3.033 23 H -0.270 1.270 24 H -0.293 1.293 25 H -0.293 1.293 26 C -0.149 4.149 27 C -0.166 4.166 28 C -0.109 4.109 29 C -0.029 4.029 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.417 0.583 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.119 0.881 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.122 0.878 49 H 0.078 0.922 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 15.527 15.609 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.186 5.186 4 N -0.175 5.175 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.136 4.136 9 H 0.144 0.856 10 C 0.311 3.689 11 O -0.458 6.458 12 N -0.361 5.361 13 C 0.009 3.991 14 C -0.113 4.113 15 C -0.140 4.140 16 C 0.059 3.941 17 N -0.377 5.377 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.264 4.264 21 N -0.616 5.616 22 Si 0.796 3.204 23 H -0.195 1.195 24 H -0.221 1.221 25 H -0.220 1.220 26 C -0.186 4.186 27 C -0.204 4.204 28 C -0.147 4.147 29 C -0.068 4.068 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.255 0.745 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.138 0.862 45 H 0.110 0.890 46 H 0.093 0.907 47 H 0.128 0.872 48 H 0.140 0.860 49 H 0.096 0.904 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.182 16.603 15.897 23.017 hybrid contribution -0.615 -1.657 -1.433 2.275 sum 0.567 14.946 14.464 20.807 Atomic orbital electron populations 1.20421 0.81139 1.05707 1.05356 1.25361 0.98572 0.82393 1.02668 1.74388 0.96746 1.25476 1.22039 1.73937 1.12743 1.09998 1.20783 1.25467 0.88489 0.92284 1.03296 1.46114 1.06783 1.08832 1.54289 1.21807 0.98287 0.74398 1.05390 1.21556 0.96822 0.90393 1.04832 0.85553 1.20395 0.83538 0.87983 0.76953 1.90743 1.25801 1.82740 1.46549 1.45847 1.18976 1.06232 1.65014 1.21148 0.97848 0.79169 1.00908 1.21093 0.97540 0.91071 1.01592 1.21417 0.98729 0.95101 0.98761 1.20270 0.94453 0.95921 0.83472 1.42425 1.27227 1.65354 1.02726 1.19617 1.02755 1.25687 0.89387 0.91295 1.25449 0.99470 1.02867 0.98625 1.69795 1.26909 1.50686 1.14170 0.85171 0.78389 0.77697 0.79113 1.19477 1.22055 1.21969 1.23093 1.01904 1.03459 0.90140 1.22975 0.94537 0.99710 1.03139 1.21762 0.96578 0.96498 0.99884 1.20469 0.89743 0.90278 1.06281 0.88126 0.88093 0.88649 0.88090 0.87426 0.74526 0.90937 0.94336 0.92404 0.88260 0.96770 0.96779 0.79043 0.94030 0.86242 0.88964 0.90690 0.87209 0.86019 0.90364 0.86428 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.29 71.24 0.73 -0.06 16 2 C 0.18 3.68 8.07 138.14 1.11 4.79 16 3 N -0.35 -9.64 12.23 -50.46 -0.62 -10.25 16 4 N -0.34 -9.16 12.21 -50.27 -0.61 -9.77 16 5 C 0.17 3.35 7.75 138.14 1.07 4.42 16 6 N -0.47 -8.40 3.11 -504.86 -1.57 -9.97 16 7 C 0.12 1.74 5.48 86.49 0.47 2.22 16 8 C -0.11 -1.32 2.52 -11.42 -0.03 -1.35 16 9 H 0.13 1.19 8.12 -2.38 -0.02 1.17 16 10 C 0.53 9.65 7.15 87.66 0.63 10.28 16 11 O -0.58 -15.76 15.82 -3.04 -0.05 -15.81 16 12 N -0.71 -11.74 5.38 -463.07 -2.49 -14.24 16 13 C 0.13 3.07 5.41 86.38 0.47 3.53 16 14 C -0.08 -1.72 5.12 30.59 0.16 -1.56 16 15 C -0.14 -3.84 1.56 -52.18 -0.08 -3.93 16 16 C 0.19 7.14 5.93 86.38 0.51 7.65 16 17 N -0.73 -35.88 5.52 -343.47 -1.89 -37.77 16 18 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 19 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.96 -57.38 13.06 21.65 0.28 -57.10 16 22 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 C -0.15 -3.13 9.94 30.62 0.30 -2.82 16 27 C -0.17 -4.18 9.94 30.62 0.30 -3.88 16 28 C -0.11 -0.76 5.23 30.82 0.16 -0.60 16 29 C -0.03 -0.26 6.34 30.05 0.19 -0.07 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 0.81 7.76 -2.39 -0.02 0.79 16 33 H 0.10 1.50 7.78 -2.39 -0.02 1.48 16 34 H 0.11 1.44 7.85 -2.38 -0.02 1.42 16 35 H 0.42 4.17 7.81 -92.71 -0.72 3.45 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.20 7.23 -2.39 -0.02 1.19 16 38 H 0.06 1.65 7.49 -2.39 -0.02 1.63 16 39 H 0.10 1.56 8.09 -2.39 -0.02 1.54 16 40 H 0.01 0.57 8.09 -2.39 -0.02 0.55 16 41 H 0.01 0.57 7.11 -2.39 -0.02 0.56 16 42 H 0.38 19.29 7.03 -92.70 -0.65 18.63 16 43 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.12 0.22 7.32 -2.39 -0.02 0.20 16 49 H 0.08 0.65 8.13 -2.39 -0.02 0.63 16 50 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 51 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -80.31 413.65 1.96 -78.36 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.43 Total: 26.30 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 7.31 Total: 2.52 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -6.91 Total: -139.11 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.05 Total: -15.81 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -80.31 1.96 -78.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168290307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.827 kcal (2) G-P(sol) polarization free energy of solvation -80.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds