Wall clock time and date at job start Wed Apr 1 2020 04:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 115.54487 * 2 1 4 4 C 1.52996 * 117.50156 * 214.29867 * 2 1 3 5 5 C 1.52991 * 117.50418 * 145.67284 * 2 1 3 6 6 H 1.09004 * 117.50114 * 359.97438 * 5 2 1 7 7 C 1.50703 * 117.49911 * 214.98113 * 5 2 1 8 8 O 1.21284 * 120.00291 * 0.02562 * 7 5 2 9 9 N 1.34781 * 120.00212 * 179.97438 * 7 5 2 10 10 C 1.46923 * 120.62811 * 0.02562 * 9 7 5 11 11 C 1.53195 * 108.77521 * 233.60733 * 10 9 7 12 12 C 1.53040 * 109.31019 * 305.36352 * 11 10 9 13 13 C 1.53044 * 109.53952 * 61.36478 * 12 11 10 14 14 H 1.08995 * 109.49782 * 58.61678 * 13 12 11 15 15 N 1.46492 * 109.49953 * 178.68563 * 13 12 11 16 16 C 1.35317 * 125.86956 * 34.94749 * 15 13 12 17 17 C 1.35349 * 106.17446 * 179.97438 * 16 15 13 18 18 C 1.50703 * 126.75129 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47470 * 95.04643 * 18 17 16 20 20 C 1.36932 * 120.00287 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99540 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00200 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00160 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47087 * 59.99999 * 24 22 20 26 26 H 1.48498 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47051 * 300.00152 * 24 22 20 28 28 N 1.33777 * 106.49799 * 0.02562 * 17 16 15 29 29 N 1.28634 * 108.88349 * 359.97438 * 28 17 16 30 30 C 1.46929 * 120.60747 * 180.02562 * 9 7 5 31 31 H 1.09001 * 109.46971 * 274.32109 * 1 2 3 32 32 H 1.08989 * 109.47580 * 34.32938 * 1 2 3 33 33 H 1.09009 * 109.46723 * 154.33180 * 1 2 3 34 34 H 1.09002 * 109.47356 * 205.67060 * 3 2 1 35 35 H 1.08999 * 109.47367 * 325.67670 * 3 2 1 36 36 H 1.08996 * 109.46988 * 85.67252 * 3 2 1 37 37 H 1.09004 * 117.49839 * 145.01530 * 4 2 1 38 38 H 1.08997 * 117.50071 * 359.97438 * 4 2 1 39 39 H 1.09001 * 109.59381 * 113.82038 * 10 9 7 40 40 H 1.09003 * 109.58830 * 353.39031 * 10 9 7 41 41 H 1.08999 * 109.50188 * 185.41251 * 11 10 9 42 42 H 1.08998 * 109.52364 * 65.32808 * 11 10 9 43 43 H 1.08999 * 109.46140 * 301.34413 * 12 11 10 44 44 H 1.08997 * 109.46016 * 181.38543 * 12 11 10 45 45 H 1.07995 * 126.91332 * 0.02562 * 16 15 13 46 46 H 1.09001 * 109.47240 * 215.04786 * 18 17 16 47 47 H 1.09006 * 109.46803 * 335.04653 * 18 17 16 48 48 H 0.97002 * 119.99348 * 0.02562 * 19 18 17 49 49 H 0.96997 * 120.00045 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.61153 * 6.62606 * 30 9 7 51 51 H 1.09001 * 109.56231 * 246.19837 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 2.2365 -1.1211 -0.7647 5 6 2.2365 -1.1206 0.7652 6 1 1.6114 -1.8578 1.2692 7 6 3.5294 -0.7805 1.4609 8 8 3.9716 0.3473 1.4014 9 7 4.1937 -1.7292 2.1502 10 6 3.6704 -3.0997 2.2319 11 6 3.5751 -3.5040 3.7064 12 6 4.9390 -3.3113 4.3732 13 6 5.3398 -1.8359 4.3018 14 1 4.5824 -1.2288 4.7975 15 7 6.6308 -1.6471 4.9679 16 6 7.6564 -2.5298 4.9740 17 6 8.6437 -1.9556 5.7003 18 6 9.9987 -2.5420 6.0024 19 7 10.9714 -2.0549 5.0212 20 6 12.2787 -2.4557 5.0959 21 1 12.5925 -3.1312 5.8780 22 6 13.2004 -1.9937 4.1665 23 7 12.8180 -1.1701 3.2137 24 14 14.9836 -2.5410 4.2680 25 1 15.0558 -4.0188 4.1409 26 1 15.7578 -1.9117 3.1681 27 1 15.5544 -2.1281 5.5752 28 7 8.1797 -0.7657 6.0983 29 7 6.9845 -0.6130 5.6477 30 6 5.4549 -1.4121 2.8339 31 1 -0.3633 0.0774 1.0248 32 1 -0.3634 0.8485 -0.5795 33 1 -0.3633 -0.9263 -0.4452 34 1 3.1822 1.3089 -0.4452 35 1 1.5807 2.0743 -0.5794 36 1 2.2765 1.7417 1.0247 37 1 3.1716 -0.8753 -1.2681 38 1 1.6113 -1.8589 -1.2675 39 1 4.3433 -3.7796 1.7093 40 1 2.6806 -3.1406 1.7771 41 1 3.2797 -4.5507 3.7783 42 1 2.8339 -2.8815 4.2076 43 1 5.6846 -3.9155 3.8563 44 1 4.8803 -3.6215 5.4164 45 1 7.6824 -3.4973 4.4949 46 1 10.3100 -2.2412 7.0028 47 1 9.9437 -3.6294 5.9506 48 1 10.6895 -1.4479 4.3190 49 1 13.4622 -0.8470 2.5645 50 1 5.6425 -0.3398 2.7768 51 1 6.2733 -1.9541 2.3600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185917527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:36 Heat of formation + Delta-G solvation = 106.625067 kcal Electronic energy + Delta-G solvation = -30559.707358 eV Core-core repulsion = 26497.776939 eV Total energy + Delta-G solvation = -4061.930419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.01302 -40.96545 -38.87120 -37.14854 -35.21001 -34.39916 -32.73770 -31.81569 -30.66554 -29.87380 -29.62175 -27.78497 -26.43193 -25.88847 -24.81871 -23.58015 -22.84496 -22.25256 -20.78279 -20.62047 -19.97294 -18.86175 -17.93488 -17.37177 -16.83501 -16.53587 -15.92495 -15.50628 -15.02664 -14.94162 -14.63126 -14.57057 -14.47019 -14.30510 -13.99060 -13.69725 -13.63877 -13.41406 -13.18847 -13.09556 -12.90471 -12.62308 -12.41603 -12.28142 -12.18129 -11.89006 -11.70939 -11.61696 -11.57014 -11.30429 -11.18361 -10.86118 -10.77067 -10.65144 -10.40578 -10.22365 -10.10968 -9.95844 -9.79986 -9.69872 -9.12149 -8.85252 -8.79291 -6.88721 -5.70588 -3.00432 1.79466 2.09347 2.18209 2.69630 2.95084 3.29981 3.48172 3.52435 3.53890 3.86771 3.98502 4.13051 4.19411 4.26160 4.32366 4.35538 4.53865 4.60540 4.64866 4.68890 4.71784 4.84944 4.96044 5.06950 5.15578 5.16734 5.22863 5.24489 5.27399 5.32680 5.37237 5.48012 5.50069 5.53430 5.55752 5.61730 5.63663 5.66683 5.71573 5.84063 5.89799 5.94658 6.20804 6.22565 6.43621 6.68297 6.78242 6.83156 6.92313 7.73217 7.80846 8.46496 8.87963 9.58047 10.14110 10.50081 11.52034 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.002128 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.264620 B =13155.376449 C =13990.384133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.106 4.106 4 C -0.145 4.145 5 C -0.191 4.191 6 H 0.125 0.875 7 C 0.546 3.454 8 O -0.524 6.524 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.130 4.130 12 C -0.132 4.132 13 C 0.138 3.862 14 H 0.113 0.887 15 N -0.295 5.295 16 C -0.044 4.044 17 C -0.004 4.004 18 C 0.233 3.767 19 N -0.726 5.726 20 C -0.240 4.240 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.285 1.285 28 N -0.253 5.253 29 N -0.093 5.093 30 C 0.104 3.896 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.186 0.814 46 H 0.039 0.961 47 H 0.037 0.963 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.107 0.893 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.366 -7.114 -6.437 32.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.163 4.163 4 C -0.183 4.183 5 C -0.212 4.212 6 H 0.142 0.858 7 C 0.335 3.665 8 O -0.399 6.399 9 N -0.342 5.342 10 C -0.021 4.021 11 C -0.169 4.169 12 C -0.170 4.170 13 C 0.035 3.965 14 H 0.131 0.869 15 N -0.089 5.089 16 C -0.194 4.194 17 C -0.142 4.142 18 C 0.104 3.896 19 N -0.370 5.370 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.741 3.259 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.212 1.212 28 N -0.120 5.120 29 N -0.072 5.072 30 C -0.020 4.020 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.203 0.797 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.125 0.875 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -31.400 -5.163 -5.905 32.365 hybrid contribution 1.199 -1.372 -0.575 1.911 sum -30.202 -6.535 -6.480 31.573 Atomic orbital electron populations 1.21404 0.91374 1.02326 1.02264 1.21622 0.94758 0.91922 1.01005 1.21382 0.99755 0.92364 1.02765 1.23241 1.03168 1.01471 0.90380 1.22371 0.97490 1.05335 0.95955 0.85762 1.19763 0.84482 0.84172 0.78122 1.90755 1.68164 1.20393 1.60623 1.47962 1.23642 1.10600 1.52046 1.21909 1.00714 0.82532 0.96966 1.21912 0.96649 1.03086 0.95235 1.21950 0.98445 0.93483 1.03140 1.21847 0.81900 0.99248 0.93530 0.86912 1.47242 1.13070 1.12976 1.35626 1.23299 0.89008 0.99784 1.07304 1.22475 0.98740 0.92515 1.00453 1.18944 0.81347 0.95054 0.94286 1.42301 1.05205 1.56800 1.32732 1.19181 0.84934 1.22747 1.10270 0.90946 1.24766 0.98225 0.99951 0.98017 1.69674 1.33960 1.36452 1.17925 0.86230 0.84847 0.77864 0.76995 1.21271 1.21753 1.21188 1.75112 1.01321 1.16437 1.19135 1.78309 1.10064 1.09232 1.09567 1.21885 0.86236 1.04479 0.89400 0.91944 0.91481 0.92258 0.91598 0.93095 0.91325 0.88115 0.87698 0.90518 0.88822 0.89158 0.90768 0.89868 0.89889 0.79655 0.94352 0.94530 0.78094 0.93460 0.87505 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 9.85 37.16 0.37 -0.22 16 2 C -0.09 -0.66 2.70 -154.51 -0.42 -1.08 16 3 C -0.11 -0.98 8.09 37.16 0.30 -0.68 16 4 C -0.15 -0.90 9.53 -26.74 -0.25 -1.16 16 5 C -0.19 -1.32 4.85 -91.78 -0.44 -1.76 16 6 H 0.12 0.56 6.57 -51.93 -0.34 0.21 16 7 C 0.55 5.57 7.46 -10.98 -0.08 5.49 16 8 O -0.52 -7.41 12.52 5.55 0.07 -7.34 16 9 N -0.61 -5.20 2.97 -172.74 -0.51 -5.71 16 10 C 0.10 0.48 6.35 -3.71 -0.02 0.46 16 11 C -0.13 -0.53 6.08 -26.61 -0.16 -0.69 16 12 C -0.13 -0.86 4.78 -26.69 -0.13 -0.99 16 13 C 0.14 1.40 3.27 -67.80 -0.22 1.18 16 14 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 15 N -0.29 -4.28 3.26 -54.64 -0.18 -4.46 16 16 C -0.04 -0.67 10.62 -17.04 -0.18 -0.85 16 17 C 0.00 -0.08 6.62 -82.77 -0.55 -0.63 16 18 C 0.23 4.98 6.82 -5.19 -0.04 4.94 16 19 N -0.73 -19.31 5.59 -61.08 -0.34 -19.65 16 20 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 21 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -29.15 13.06 55.49 0.72 -28.42 16 24 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 N -0.25 -5.34 12.41 33.29 0.41 -4.93 16 29 N -0.09 -1.74 13.16 60.35 0.79 -0.94 16 30 C 0.10 1.13 6.04 -3.70 -0.02 1.11 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.32 7.92 -51.94 -0.41 -0.09 16 33 H 0.06 0.22 7.90 -51.92 -0.41 -0.19 16 34 H 0.07 0.72 7.02 -51.93 -0.36 0.36 16 35 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 36 H 0.07 0.75 7.26 -51.93 -0.38 0.38 16 37 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 38 H 0.10 0.43 8.05 -51.93 -0.42 0.01 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.27 5.51 -51.93 -0.29 -0.01 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.51 7.24 -51.93 -0.38 0.14 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.19 2.18 7.34 -52.49 -0.39 1.79 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.39 11.11 7.66 -40.82 -0.31 10.80 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.11 1.50 7.01 -51.93 -0.36 1.13 16 51 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -36.57 407.24 -8.24 -44.81 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.23 Total: 5.14 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.10 Total: -2.38 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: 0.90 Total: -64.12 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.07 Total: -7.34 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.57 -8.24 -44.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185917527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.437 kcal (2) G-P(sol) polarization free energy of solvation -36.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds