Wall clock time and date at job start Wed Apr 1 2020 04:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 115.54487 * 2 1 4 4 C 1.52996 * 117.50156 * 214.29867 * 2 1 3 5 5 C 1.52991 * 117.50418 * 145.67284 * 2 1 3 6 6 H 1.09004 * 117.50114 * 359.97438 * 5 2 1 7 7 C 1.50703 * 117.49911 * 214.98113 * 5 2 1 8 8 O 1.21284 * 120.00291 * 0.02562 * 7 5 2 9 9 N 1.34781 * 120.00212 * 179.97438 * 7 5 2 10 10 C 1.46923 * 120.62811 * 0.02562 * 9 7 5 11 11 C 1.53195 * 108.77521 * 233.60733 * 10 9 7 12 12 C 1.53040 * 109.31019 * 305.36352 * 11 10 9 13 13 C 1.53044 * 109.53952 * 61.36478 * 12 11 10 14 14 H 1.08995 * 109.49782 * 58.61678 * 13 12 11 15 15 N 1.46492 * 109.49953 * 178.68563 * 13 12 11 16 16 C 1.35317 * 125.86956 * 34.94749 * 15 13 12 17 17 C 1.35349 * 106.17446 * 179.97438 * 16 15 13 18 18 C 1.50703 * 126.75129 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47470 * 95.04643 * 18 17 16 20 20 C 1.36932 * 120.00287 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99540 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00200 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00160 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47087 * 59.99999 * 24 22 20 26 26 H 1.48498 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47051 * 300.00152 * 24 22 20 28 28 N 1.33777 * 106.49799 * 0.02562 * 17 16 15 29 29 N 1.28634 * 108.88349 * 359.97438 * 28 17 16 30 30 C 1.46929 * 120.60747 * 180.02562 * 9 7 5 31 31 H 1.09001 * 109.46971 * 274.32109 * 1 2 3 32 32 H 1.08989 * 109.47580 * 34.32938 * 1 2 3 33 33 H 1.09009 * 109.46723 * 154.33180 * 1 2 3 34 34 H 1.09002 * 109.47356 * 205.67060 * 3 2 1 35 35 H 1.08999 * 109.47367 * 325.67670 * 3 2 1 36 36 H 1.08996 * 109.46988 * 85.67252 * 3 2 1 37 37 H 1.09004 * 117.49839 * 145.01530 * 4 2 1 38 38 H 1.08997 * 117.50071 * 359.97438 * 4 2 1 39 39 H 1.09001 * 109.59381 * 113.82038 * 10 9 7 40 40 H 1.09003 * 109.58830 * 353.39031 * 10 9 7 41 41 H 1.08999 * 109.50188 * 185.41251 * 11 10 9 42 42 H 1.08998 * 109.52364 * 65.32808 * 11 10 9 43 43 H 1.08999 * 109.46140 * 301.34413 * 12 11 10 44 44 H 1.08997 * 109.46016 * 181.38543 * 12 11 10 45 45 H 1.07995 * 126.91332 * 0.02562 * 16 15 13 46 46 H 1.09001 * 109.47240 * 215.04786 * 18 17 16 47 47 H 1.09006 * 109.46803 * 335.04653 * 18 17 16 48 48 H 0.97002 * 119.99348 * 0.02562 * 19 18 17 49 49 H 0.96997 * 120.00045 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.61153 * 6.62606 * 30 9 7 51 51 H 1.09001 * 109.56231 * 246.19837 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 2.2365 -1.1211 -0.7647 5 6 2.2365 -1.1206 0.7652 6 1 1.6114 -1.8578 1.2692 7 6 3.5294 -0.7805 1.4609 8 8 3.9716 0.3473 1.4014 9 7 4.1937 -1.7292 2.1502 10 6 3.6704 -3.0997 2.2319 11 6 3.5751 -3.5040 3.7064 12 6 4.9390 -3.3113 4.3732 13 6 5.3398 -1.8359 4.3018 14 1 4.5824 -1.2288 4.7975 15 7 6.6308 -1.6471 4.9679 16 6 7.6564 -2.5298 4.9740 17 6 8.6437 -1.9556 5.7003 18 6 9.9987 -2.5420 6.0024 19 7 10.9714 -2.0549 5.0212 20 6 12.2787 -2.4557 5.0959 21 1 12.5925 -3.1312 5.8780 22 6 13.2004 -1.9937 4.1665 23 7 12.8180 -1.1701 3.2137 24 14 14.9836 -2.5410 4.2680 25 1 15.0558 -4.0188 4.1409 26 1 15.7578 -1.9117 3.1681 27 1 15.5544 -2.1281 5.5752 28 7 8.1797 -0.7657 6.0983 29 7 6.9845 -0.6130 5.6477 30 6 5.4549 -1.4121 2.8339 31 1 -0.3633 0.0774 1.0248 32 1 -0.3634 0.8485 -0.5795 33 1 -0.3633 -0.9263 -0.4452 34 1 3.1822 1.3089 -0.4452 35 1 1.5807 2.0743 -0.5794 36 1 2.2765 1.7417 1.0247 37 1 3.1716 -0.8753 -1.2681 38 1 1.6113 -1.8589 -1.2675 39 1 4.3433 -3.7796 1.7093 40 1 2.6806 -3.1406 1.7771 41 1 3.2797 -4.5507 3.7783 42 1 2.8339 -2.8815 4.2076 43 1 5.6846 -3.9155 3.8563 44 1 4.8803 -3.6215 5.4164 45 1 7.6824 -3.4973 4.4949 46 1 10.3100 -2.2412 7.0028 47 1 9.9437 -3.6294 5.9506 48 1 10.6895 -1.4479 4.3190 49 1 13.4622 -0.8470 2.5645 50 1 5.6425 -0.3398 2.7768 51 1 6.2733 -1.9541 2.3600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185917527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:34 Heat of formation + Delta-G solvation = 81.520985 kcal Electronic energy + Delta-G solvation = -30560.795953 eV Core-core repulsion = 26497.776939 eV Total energy + Delta-G solvation = -4063.019014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.34903 -41.68284 -39.53830 -37.88758 -36.86042 -35.68635 -33.85692 -33.24316 -31.66885 -31.53296 -30.25530 -28.35947 -27.71110 -27.07478 -25.67160 -24.80066 -24.23712 -23.20166 -22.09803 -21.59063 -20.60518 -19.55098 -19.31182 -18.65111 -17.98558 -17.60196 -16.75716 -16.66819 -16.29243 -16.01772 -15.59726 -15.55852 -15.53075 -15.11654 -15.06006 -14.84473 -14.57784 -14.37479 -14.24768 -14.08815 -13.86331 -13.60653 -13.50323 -13.12319 -12.97239 -12.81149 -12.73413 -12.70074 -12.59319 -12.34764 -12.16117 -12.13912 -12.08921 -11.90542 -11.84237 -11.74712 -11.22926 -11.17648 -10.95082 -10.82610 -10.51930 -10.26797 -9.82740 -9.02987 -7.93416 -5.24403 0.53834 1.15204 1.39771 1.42854 1.50213 1.53643 1.59684 1.90446 2.59333 2.74495 3.11827 3.27759 3.37615 3.45239 3.52913 3.62669 3.69002 3.79798 3.88044 3.94648 3.95601 4.01133 4.17608 4.17979 4.21793 4.25056 4.41542 4.49023 4.53609 4.58858 4.71008 4.75419 4.80225 4.84160 4.85432 4.92046 4.95815 4.99234 5.05345 5.08953 5.11102 5.11401 5.16505 5.23752 5.28343 5.34677 5.49482 5.50296 5.64414 6.25174 6.25499 7.06284 7.32096 7.47669 8.03529 8.29526 9.30367 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.002128 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.264620 B =13155.376449 C =13990.384133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.102 4.102 4 C -0.133 4.133 5 C -0.185 4.185 6 H 0.161 0.839 7 C 0.533 3.467 8 O -0.578 6.578 9 N -0.603 5.603 10 C 0.094 3.906 11 C -0.121 4.121 12 C -0.126 4.126 13 C 0.136 3.864 14 H 0.110 0.890 15 N -0.279 5.279 16 C -0.013 4.013 17 C -0.037 4.037 18 C 0.236 3.764 19 N -0.740 5.740 20 C -0.243 4.243 21 H 0.087 0.913 22 C -0.081 4.081 23 N -0.975 5.975 24 Si 0.981 3.019 25 H -0.269 1.269 26 H -0.299 1.299 27 H -0.279 1.279 28 N -0.298 5.298 29 N -0.119 5.119 30 C 0.110 3.890 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.229 0.771 46 H 0.029 0.971 47 H 0.067 0.933 48 H 0.369 0.631 49 H 0.250 0.750 50 H 0.063 0.937 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.879 -11.269 -6.830 36.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.159 4.159 4 C -0.170 4.170 5 C -0.206 4.206 6 H 0.178 0.822 7 C 0.324 3.676 8 O -0.457 6.457 9 N -0.336 5.336 10 C -0.027 4.027 11 C -0.159 4.159 12 C -0.165 4.165 13 C 0.034 3.966 14 H 0.128 0.872 15 N -0.074 5.074 16 C -0.165 4.165 17 C -0.176 4.176 18 C 0.108 3.892 19 N -0.382 5.382 20 C -0.375 4.375 21 H 0.104 0.896 22 C -0.272 4.272 23 N -0.625 5.625 24 Si 0.810 3.190 25 H -0.195 1.195 26 H -0.225 1.225 27 H -0.205 1.205 28 N -0.164 5.164 29 N -0.097 5.097 30 C -0.016 4.016 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.157 0.843 39 H 0.107 0.893 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.245 0.755 46 H 0.047 0.953 47 H 0.085 0.915 48 H 0.200 0.800 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -33.971 -9.371 -6.250 35.790 hybrid contribution 1.880 -0.061 -0.454 1.935 sum -32.091 -9.432 -6.704 34.114 Atomic orbital electron populations 1.21392 0.89170 1.03546 1.02644 1.21700 0.96230 0.90627 1.02129 1.21270 0.98891 0.94763 1.00994 1.23311 1.02555 1.01335 0.89782 1.22456 0.95832 1.05927 0.96336 0.82161 1.20537 0.85492 0.83658 0.77923 1.90745 1.69659 1.22796 1.62524 1.48088 1.22401 1.12182 1.50888 1.22307 1.02266 0.80011 0.98100 1.21936 0.94826 1.05133 0.94037 1.22046 1.00347 0.89898 1.04196 1.22254 0.79701 1.02436 0.92218 0.87210 1.47607 1.14172 1.11586 1.33989 1.23750 0.87502 1.00513 1.04731 1.22360 0.99119 0.93068 1.03008 1.18993 0.81387 0.96422 0.92374 1.42525 1.05767 1.56648 1.33306 1.19682 0.85928 1.21956 1.09907 0.89557 1.25691 1.02832 1.00641 0.98070 1.69866 1.35154 1.38447 1.19083 0.85095 0.79204 0.78059 0.76679 1.19496 1.22548 1.20491 1.75036 1.02604 1.17861 1.20939 1.78213 1.09592 1.10875 1.11050 1.21593 0.87780 1.01824 0.90367 0.91793 0.91492 0.90016 0.94292 0.91913 0.93891 0.90138 0.84342 0.89271 0.86076 0.85771 0.90627 0.88696 0.89246 0.75476 0.95339 0.91505 0.79996 0.94136 0.91842 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.85 71.98 0.71 -0.11 16 2 C -0.11 -1.40 2.70 -52.18 -0.14 -1.54 16 3 C -0.10 -2.05 8.09 71.98 0.58 -1.47 16 4 C -0.13 -1.36 9.53 30.59 0.29 -1.07 16 5 C -0.19 -2.15 4.85 -11.54 -0.06 -2.21 16 6 H 0.16 0.67 6.57 -2.38 -0.02 0.65 16 7 C 0.53 10.93 7.46 87.66 0.65 11.59 16 8 O -0.58 -17.88 12.52 -3.04 -0.04 -17.92 16 9 N -0.60 -9.65 2.97 -818.82 -2.43 -12.08 16 10 C 0.09 0.51 6.35 86.36 0.55 1.06 16 11 C -0.12 -0.43 6.08 30.67 0.19 -0.24 16 12 C -0.13 -1.20 4.78 30.62 0.15 -1.06 16 13 C 0.14 2.63 3.27 45.08 0.15 2.78 16 14 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 15 N -0.28 -8.05 3.26 -326.77 -1.06 -9.12 16 16 C -0.01 -0.39 10.62 83.49 0.89 0.50 16 17 C -0.04 -1.44 6.62 41.60 0.28 -1.17 16 18 C 0.24 10.06 6.82 85.63 0.58 10.64 16 19 N -0.74 -39.90 5.59 -347.17 -1.94 -41.84 16 20 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 21 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 22 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 23 N -0.97 -62.51 13.06 21.65 0.28 -62.23 16 24 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 N -0.30 -13.06 12.41 -48.60 -0.60 -13.67 16 29 N -0.12 -4.59 13.16 37.02 0.49 -4.10 16 30 C 0.11 2.44 6.04 86.37 0.52 2.96 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.50 7.92 -2.39 -0.02 0.48 16 33 H 0.08 0.26 7.90 -2.38 -0.02 0.24 16 34 H 0.04 0.96 7.02 -2.39 -0.02 0.94 16 35 H 0.06 1.03 7.92 -2.39 -0.02 1.01 16 36 H 0.04 1.05 7.26 -2.39 -0.02 1.04 16 37 H 0.08 1.18 8.05 -2.39 -0.02 1.16 16 38 H 0.14 0.52 8.05 -2.39 -0.02 0.50 16 39 H 0.09 0.35 8.14 -2.39 -0.02 0.34 16 40 H 0.12 0.05 5.51 -2.39 -0.01 0.04 16 41 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.09 0.74 7.24 -2.39 -0.02 0.72 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.23 4.48 7.34 -2.91 -0.02 4.46 16 46 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 48 H 0.37 21.97 7.66 -92.71 -0.71 21.26 16 49 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.06 1.97 7.01 -2.38 -0.02 1.96 16 51 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -86.56 407.24 3.59 -82.97 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.23 Total: 25.59 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 6.64 Total: 3.29 kcal Atomic # 7 Polarization: -137.77 SS G_CDS: -5.27 Total: -143.04 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.04 Total: -17.92 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -86.56 3.59 -82.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185917527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.495 kcal (2) G-P(sol) polarization free energy of solvation -86.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds