Wall clock time and date at job start Wed Apr 1 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33243 * 125.52585 * 2 1 4 4 C 1.30833 * 109.82586 * 179.79502 * 3 2 1 5 5 C 1.50703 * 125.96013 * 180.23045 * 4 3 2 6 6 N 1.34427 * 108.07766 * 0.37786 * 4 3 2 7 7 C 1.46499 * 126.82088 * 179.89358 * 6 4 3 8 8 C 1.53004 * 109.47225 * 269.70959 * 7 6 4 9 9 C 1.52998 * 109.47065 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47299 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99522 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00319 * 180.02562 * 10 9 8 13 13 C 1.47347 * 125.52200 * 0.02562 * 12 10 9 14 14 C 1.54947 * 104.90068 * 156.71998 * 13 12 10 15 15 C 1.54785 * 101.49072 * 37.23669 * 14 13 12 16 16 H 1.08999 * 112.85189 * 85.52461 * 15 14 13 17 17 C 1.55147 * 109.42035 * 213.97134 * 15 14 13 18 18 N 1.46648 * 107.50592 * 84.69901 * 17 15 14 19 19 C 1.36937 * 125.28434 * 196.76749 * 18 17 15 20 20 H 1.07999 * 120.00261 * 355.35401 * 19 18 17 21 21 C 1.38812 * 119.99631 * 175.35169 * 19 18 17 22 22 N 1.31622 * 120.00476 * 7.32169 * 21 19 18 23 23 Si 1.86802 * 119.99962 * 187.32225 * 21 19 18 24 24 H 1.48499 * 109.47498 * 94.98899 * 23 21 19 25 25 H 1.48503 * 109.47048 * 214.98685 * 23 21 19 26 26 H 1.48497 * 109.47056 * 334.98577 * 23 21 19 27 27 C 1.46493 * 109.42420 * 16.76610 * 18 17 15 28 28 C 1.47251 * 125.52468 * 180.02562 * 12 10 9 29 29 H 1.08994 * 111.94912 * 56.64861 * 28 12 10 30 30 N 1.30715 * 125.52505 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47750 * 269.96069 * 1 2 3 32 32 H 1.09001 * 109.47219 * 29.96803 * 1 2 3 33 33 H 1.09007 * 109.47031 * 149.96578 * 1 2 3 34 34 H 1.08990 * 109.47093 * 270.17337 * 5 4 3 35 35 H 1.09001 * 109.46774 * 30.17078 * 5 4 3 36 36 H 1.08998 * 109.46902 * 150.16943 * 5 4 3 37 37 H 1.09005 * 109.47113 * 149.71163 * 7 6 4 38 38 H 1.09003 * 109.47304 * 29.71033 * 7 6 4 39 39 H 1.08996 * 109.47046 * 59.99971 * 8 7 6 40 40 H 1.08995 * 109.47101 * 299.99876 * 8 7 6 41 41 H 1.09005 * 109.47131 * 60.00291 * 9 8 7 42 42 H 1.09003 * 109.47446 * 300.00062 * 9 8 7 43 43 H 1.09003 * 110.35643 * 37.86492 * 13 12 10 44 44 H 1.09006 * 110.35406 * 275.57797 * 13 12 10 45 45 H 1.09005 * 111.02972 * 155.29400 * 14 13 12 46 46 H 1.08993 * 111.03312 * 279.17153 * 14 13 12 47 47 H 1.08994 * 110.20370 * 324.91349 * 17 15 14 48 48 H 1.09008 * 109.18316 * 203.90251 * 17 15 14 49 49 H 0.96995 * 120.00600 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.71263 * 238.31219 * 27 18 17 51 51 H 1.08999 * 109.67118 * 117.74222 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7304 0.0044 5 6 4.7227 1.6652 0.0108 6 7 3.5965 -0.6127 -0.0011 7 6 4.8047 -1.4413 -0.0011 8 6 5.2253 -1.7297 -1.4437 9 6 6.4874 -2.5945 -1.4437 10 6 6.9014 -2.8792 -2.8645 11 8 6.2511 -2.4338 -3.7863 12 7 7.9941 -3.6287 -3.1108 13 6 8.8689 -4.2288 -2.0882 14 6 9.5579 -5.4190 -2.8020 15 6 9.7805 -4.8409 -4.2205 16 1 10.7032 -4.2667 -4.3036 17 6 9.6389 -5.9763 -5.2683 18 7 8.2121 -6.1168 -5.5765 19 6 7.6384 -7.1972 -6.1919 20 1 8.2583 -8.0020 -6.5586 21 6 6.2600 -7.2581 -6.3444 22 7 5.5165 -6.2184 -6.0300 23 14 5.4602 -8.8155 -6.9957 24 1 5.0159 -9.6577 -5.8562 25 1 4.2873 -8.4567 -7.8330 26 1 6.4415 -9.5701 -7.8159 27 6 7.4959 -4.9218 -5.1237 28 6 8.5071 -3.9806 -4.4454 29 1 8.7113 -3.0967 -5.0495 30 7 2.2665 -1.0638 -0.0005 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3634 0.8903 -0.5133 33 1 -0.3633 -0.8897 -0.5144 34 1 5.0099 1.8949 -1.0152 35 1 4.4544 2.5865 0.5279 36 1 5.5586 1.1904 0.5245 37 1 4.6010 -2.3808 0.5127 38 1 5.6077 -0.9128 0.5127 39 1 5.4290 -0.7903 -1.9575 40 1 4.4223 -2.2582 -1.9574 41 1 6.2841 -3.5341 -0.9297 42 1 7.2903 -2.0657 -0.9299 43 1 8.2775 -4.5837 -1.2442 44 1 9.6125 -3.5054 -1.7536 45 1 10.5075 -5.6639 -2.3261 46 1 8.9024 -6.2893 -2.8327 47 1 10.0254 -6.9119 -4.8641 48 1 10.1882 -5.7028 -6.1692 49 1 4.5534 -6.2608 -6.1369 50 1 6.7216 -5.2052 -4.4107 51 1 7.0426 -4.4198 -5.9784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189748708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:03 Heat of formation + Delta-G solvation = 52.111705 kcal Electronic energy + Delta-G solvation = -30850.085353 eV Core-core repulsion = 26785.791057 eV Total energy + Delta-G solvation = -4064.294296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.14256 -41.47408 -39.46373 -36.78333 -36.58721 -34.23951 -33.97015 -33.22931 -32.21119 -30.78430 -30.28737 -29.28170 -28.31783 -27.06425 -26.34916 -24.16961 -23.16036 -22.23986 -21.74105 -21.41539 -20.94194 -19.95976 -18.94926 -18.24679 -17.59493 -17.28668 -16.89927 -16.86517 -16.34557 -16.12714 -15.58845 -15.33619 -15.23672 -14.98746 -14.55179 -14.46222 -14.28454 -14.17878 -13.92868 -13.72813 -13.63585 -13.36878 -13.35086 -13.20189 -13.09011 -12.97359 -12.95939 -12.77085 -12.72229 -12.56520 -12.53319 -12.13920 -11.90209 -11.88011 -11.75323 -11.50993 -11.44850 -11.05678 -10.88683 -10.75121 -10.69990 -10.32838 -9.57965 -8.93160 -7.89229 -5.27282 0.57368 1.33734 1.38784 1.41465 1.51152 1.71413 1.83217 2.08989 2.44414 3.12060 3.27431 3.34746 3.44541 3.66379 3.69472 3.71913 3.77236 3.86745 3.95299 4.01677 4.18988 4.31643 4.35193 4.36876 4.43570 4.50820 4.52730 4.55415 4.63264 4.66368 4.69264 4.76258 4.81776 4.87327 4.90352 4.96514 4.98214 5.02285 5.12370 5.16566 5.21003 5.25867 5.34597 5.41695 5.48295 5.52924 5.59261 5.78150 5.91770 6.14781 6.68167 7.02963 7.09063 7.28415 7.75351 8.36289 9.18701 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.002536 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.013884 B =11037.132695 C =12854.525309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.203 3.797 3 N -0.577 5.577 4 C 0.275 3.725 5 C -0.076 4.076 6 N -0.382 5.382 7 C 0.130 3.870 8 C -0.110 4.110 9 C -0.113 4.113 10 C 0.508 3.492 11 O -0.597 6.597 12 N -0.611 5.611 13 C 0.100 3.900 14 C -0.118 4.118 15 C -0.091 4.091 16 H 0.137 0.863 17 C 0.135 3.865 18 N -0.623 5.623 19 C -0.241 4.241 20 H 0.090 0.910 21 C -0.072 4.072 22 N -0.951 5.951 23 Si 0.979 3.021 24 H -0.285 1.285 25 H -0.301 1.301 26 H -0.260 1.260 27 C 0.201 3.799 28 C 0.115 3.885 29 H 0.068 0.932 30 N -0.360 5.360 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.151 0.849 39 H 0.067 0.933 40 H 0.028 0.972 41 H 0.113 0.887 42 H 0.150 0.850 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.046 0.954 47 H 0.054 0.946 48 H 0.018 0.982 49 H 0.240 0.760 50 H 0.010 0.990 51 H -0.026 1.026 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.191 13.098 20.928 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 N -0.307 5.307 4 C 0.000 4.000 5 C -0.135 4.135 6 N -0.172 5.172 7 C 0.009 3.991 8 C -0.149 4.149 9 C -0.153 4.153 10 C 0.298 3.702 11 O -0.478 6.478 12 N -0.345 5.345 13 C -0.021 4.021 14 C -0.155 4.155 15 C -0.110 4.110 16 H 0.155 0.845 17 C 0.010 3.990 18 N -0.350 5.350 19 C -0.370 4.370 20 H 0.108 0.892 21 C -0.264 4.264 22 N -0.599 5.599 23 Si 0.807 3.193 24 H -0.212 1.212 25 H -0.228 1.228 26 H -0.184 1.184 27 C 0.075 3.925 28 C 0.010 3.990 29 H 0.086 0.914 30 N -0.189 5.189 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.169 0.831 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.131 0.869 42 H 0.168 0.832 43 H 0.112 0.888 44 H 0.130 0.870 45 H 0.143 0.857 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.036 0.964 49 H 0.050 0.950 50 H 0.029 0.971 51 H -0.008 1.008 Dipole moment (debyes) X Y Z Total from point charges 7.302 12.834 20.421 25.200 hybrid contribution -1.304 -0.968 -1.511 2.218 sum 5.998 11.866 18.910 23.117 Atomic orbital electron populations 1.20202 0.82062 1.04480 1.04759 1.24949 0.99742 0.85667 0.97530 1.70354 1.01069 1.31518 1.27793 1.25274 0.96070 0.84331 0.94375 1.20666 0.90272 0.96993 1.05568 1.50503 1.05827 1.06164 1.54691 1.22120 0.82712 0.97084 0.97167 1.21539 0.96930 1.00464 0.96013 1.21537 0.99258 1.03143 0.91357 1.21272 0.78643 0.77215 0.93021 1.90740 1.53956 1.54081 1.48995 1.48762 1.27143 1.50721 1.07831 1.22698 0.93551 0.95278 0.90586 1.22778 1.02296 0.96900 0.93556 1.23334 0.96506 0.94978 0.96201 0.84487 1.21615 0.84539 0.97211 0.95612 1.44436 1.03848 1.17348 1.69343 1.19492 0.90410 0.96915 1.30210 0.89190 1.25800 0.97124 1.00780 1.02726 1.70338 1.03939 1.30111 1.55536 0.85049 0.77849 0.78870 0.77554 1.21183 1.22838 1.18368 1.20796 0.91808 0.85717 0.94209 1.22588 0.94840 0.96395 0.85154 0.91435 1.77966 0.88340 1.23944 1.28691 0.88255 0.88830 0.89917 0.88433 0.87523 0.86554 0.87593 0.83140 0.91469 0.95284 0.86886 0.83233 0.88769 0.86955 0.85672 0.93532 0.92780 0.96403 0.95035 0.97150 1.00761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.51 71.23 0.75 -0.34 16 2 C 0.20 5.70 8.14 138.63 1.13 6.82 16 3 N -0.58 -15.90 11.19 -179.73 -2.01 -17.91 16 4 C 0.27 6.11 7.98 138.23 1.10 7.21 16 5 C -0.08 -0.81 10.21 71.24 0.73 -0.08 16 6 N -0.38 -9.16 3.64 -338.47 -1.23 -10.39 16 7 C 0.13 2.03 6.30 86.38 0.54 2.57 16 8 C -0.11 -2.54 4.83 30.60 0.15 -2.39 16 9 C -0.11 -2.16 4.71 29.85 0.14 -2.02 16 10 C 0.51 17.32 7.53 87.66 0.66 17.98 16 11 O -0.60 -28.33 16.02 -3.04 -0.05 -28.38 16 12 N -0.61 -19.27 2.84 -784.09 -2.23 -21.49 16 13 C 0.10 1.86 6.66 86.88 0.58 2.44 16 14 C -0.12 -2.65 6.37 31.87 0.20 -2.45 16 15 C -0.09 -2.60 4.10 -8.66 -0.04 -2.64 16 16 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 17 C 0.14 5.21 6.52 87.09 0.57 5.78 16 18 N -0.62 -32.99 3.37 -695.65 -2.35 -35.33 16 19 C -0.24 -13.97 10.23 84.03 0.86 -13.11 16 20 H 0.09 4.87 7.84 -2.91 -0.02 4.84 16 21 C -0.07 -4.32 5.47 84.86 0.46 -3.86 16 22 N -0.95 -62.85 10.28 21.65 0.22 -62.62 16 23 Si 0.98 48.11 29.56 68.60 2.03 50.14 16 24 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 25 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 26 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.20 10.92 4.62 86.68 0.40 11.32 16 28 C 0.12 4.47 3.76 45.94 0.17 4.64 16 29 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 30 N -0.36 -10.98 12.70 -51.33 -0.65 -11.63 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.12 0.41 7.12 -2.39 -0.02 0.39 16 37 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.15 0.76 7.10 -2.39 -0.02 0.75 16 39 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 40 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 41 H 0.11 1.83 7.84 -2.38 -0.02 1.81 16 42 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.38 7.49 -2.39 -0.02 1.36 16 44 H 0.11 1.16 8.14 -2.38 -0.02 1.15 16 45 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.05 1.44 7.91 -2.39 -0.02 1.42 16 47 H 0.05 1.94 7.97 -2.39 -0.02 1.92 16 48 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16 50 H 0.01 0.64 6.81 -2.38 -0.02 0.63 16 51 H -0.03 -1.71 7.58 -2.39 -0.02 -1.73 16 Total: -1.00 -100.14 408.75 3.06 -97.08 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.91 Total: 8.65 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 8.41 Total: 31.89 kcal Atomic # 7 Polarization: -151.14 SS G_CDS: -8.25 Total: -159.38 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.05 Total: -28.38 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -100.14 3.06 -97.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189748708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.191 kcal (2) G-P(sol) polarization free energy of solvation -100.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds