Wall clock time and date at job start Wed Apr 1 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33475 * 125.49843 * 2 1 4 4 C 1.30322 * 109.72850 * 179.97438 * 3 2 1 5 5 N 1.34679 * 108.04233 * 0.06115 * 4 3 2 6 6 N 1.30976 * 125.49629 * 179.97438 * 2 1 3 7 7 C 1.46304 * 125.04368 * 179.89092 * 5 4 3 8 8 C 1.53309 * 108.77363 * 342.98079 * 7 5 4 9 9 H 1.08999 * 109.46753 * 290.13955 * 8 7 5 10 10 C 1.50693 * 109.46810 * 170.14433 * 8 7 5 11 11 O 1.21280 * 120.00053 * 335.32363 * 10 8 7 12 12 N 1.34782 * 120.00000 * 155.33216 * 10 8 7 13 13 C 1.46926 * 120.62803 * 175.30596 * 12 10 8 14 14 C 1.53198 * 108.77418 * 233.62517 * 13 12 10 15 15 C 1.53038 * 109.31097 * 305.36948 * 14 13 12 16 16 C 1.52999 * 109.46069 * 181.38228 * 15 14 13 17 17 N 1.46500 * 109.47503 * 174.99822 * 16 15 14 18 18 C 1.36936 * 120.00174 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00021 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00113 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99868 * 359.72224 * 20 18 17 22 22 Si 1.86805 * 120.00059 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46799 * 90.00250 * 22 20 18 24 24 H 1.48492 * 109.47196 * 209.99972 * 22 20 18 25 25 H 1.48498 * 109.46763 * 330.00404 * 22 20 18 26 26 C 1.53042 * 109.54141 * 61.36345 * 15 14 13 27 27 C 1.46921 * 120.62983 * 355.32419 * 12 10 8 28 28 C 1.53156 * 109.48206 * 50.13747 * 8 7 5 29 29 C 1.50927 * 127.90309 * 180.10430 * 4 3 2 30 30 H 1.09005 * 109.47053 * 270.00029 * 1 2 3 31 31 H 1.08993 * 109.47038 * 29.99689 * 1 2 3 32 32 H 1.09001 * 109.46874 * 150.00186 * 1 2 3 33 33 H 1.09005 * 109.58306 * 223.19938 * 7 5 4 34 34 H 1.08997 * 109.70744 * 102.84377 * 7 5 4 35 35 H 1.08997 * 109.58569 * 113.84325 * 13 12 10 36 36 H 1.09001 * 109.70681 * 353.48620 * 13 12 10 37 37 H 1.08996 * 109.49810 * 185.41531 * 14 13 12 38 38 H 1.09002 * 109.51816 * 65.33468 * 14 13 12 39 39 H 1.09007 * 109.46240 * 301.35523 * 15 14 13 40 40 H 1.09004 * 109.46753 * 54.99895 * 16 15 14 41 41 H 1.09005 * 109.47369 * 295.00362 * 16 15 14 42 42 H 0.96998 * 119.99777 * 0.02562 * 17 16 15 43 43 H 0.96997 * 119.99628 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.49820 * 58.58313 * 26 15 14 45 45 H 1.09002 * 109.49709 * 178.68385 * 26 15 14 46 46 H 1.09002 * 109.58971 * 246.15865 * 27 12 10 47 47 H 1.08997 * 109.58583 * 6.58437 * 27 12 10 48 48 H 1.08996 * 109.51052 * 50.75181 * 28 8 7 49 49 H 1.09003 * 109.50540 * 170.88748 * 28 8 7 50 50 H 1.08998 * 109.71750 * 283.69485 * 29 4 3 51 51 H 1.08999 * 109.71302 * 44.34986 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5363 0.7325 0.0005 5 7 3.5897 -0.6132 -0.0004 6 7 2.2676 -1.0663 0.0005 7 6 4.8198 -1.4052 -0.0025 8 6 5.9855 -0.5049 -0.4282 9 1 5.8849 -0.2555 -1.4845 10 6 7.2875 -1.2300 -0.2051 11 8 7.3551 -2.1146 0.6218 12 7 8.3771 -0.8953 -0.9244 13 6 9.6776 -1.5207 -0.6482 14 6 10.7163 -0.4181 -0.4194 15 6 10.7180 0.5323 -1.6188 16 6 11.7783 1.6153 -1.4096 17 7 11.8632 2.4538 -2.6078 18 6 12.7507 3.4957 -2.6530 19 1 13.3878 3.6995 -1.8051 20 6 12.8314 4.2898 -3.7886 21 7 12.0588 4.0381 -4.8241 22 14 14.0416 5.7115 -3.8500 23 1 15.3384 5.2345 -4.3939 24 1 13.5022 6.7833 -4.7248 25 1 14.2463 6.2468 -2.4800 26 6 9.3412 1.1866 -1.7555 27 6 8.2870 0.1022 -1.9994 28 6 5.9680 0.7809 0.4037 29 6 4.7522 1.6266 0.0029 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 4.7209 -2.2319 -0.7060 34 1 5.0067 -1.7966 0.9974 35 1 9.9764 -2.1334 -1.4987 36 1 9.6038 -2.1439 0.2431 37 1 11.7038 -0.8660 -0.3086 38 1 10.4651 0.1370 0.4844 39 1 10.9452 -0.0279 -2.5259 40 1 12.7449 1.1464 -1.2250 41 1 11.5041 2.2317 -0.5534 42 1 11.2907 2.2710 -3.3692 43 1 12.1151 4.5933 -5.6174 44 1 9.1024 1.7265 -0.8392 45 1 9.3501 1.8809 -2.5957 46 1 8.4724 -0.3781 -2.9601 47 1 7.2939 0.5514 -1.9987 48 1 5.9030 0.5288 1.4621 49 1 6.8814 1.3463 0.2190 50 1 4.9054 2.0416 -0.9932 51 1 4.6131 2.4344 0.7213 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205743362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:14 Heat of formation + Delta-G solvation = 52.145325 kcal Electronic energy + Delta-G solvation = -30912.401231 eV Core-core repulsion = 26848.108394 eV Total energy + Delta-G solvation = -4064.292838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.65061 -40.71982 -38.18778 -36.91106 -35.08895 -33.58394 -33.04732 -32.34729 -31.20053 -30.41695 -29.97695 -28.72935 -26.81525 -24.82850 -24.12748 -23.50741 -23.20251 -21.83259 -21.01342 -20.50169 -19.86982 -18.88912 -17.93174 -17.10998 -16.76834 -16.41792 -16.11774 -15.45857 -15.32437 -14.85359 -14.62753 -14.44941 -14.42692 -14.27309 -13.88048 -13.77126 -13.54827 -13.41660 -13.24215 -12.94887 -12.87793 -12.69880 -12.53837 -12.39969 -12.25812 -12.02440 -11.91596 -11.64790 -11.37164 -11.24483 -11.06615 -10.88824 -10.51775 -10.47651 -10.39884 -10.26952 -10.08413 -9.97012 -9.92795 -9.71582 -9.52699 -8.93021 -8.82998 -6.97823 -5.82806 -3.11058 1.33954 1.87303 2.23279 2.61116 2.73565 3.39522 3.45201 3.46437 3.57528 3.77323 3.92071 4.09791 4.38704 4.44878 4.47047 4.53447 4.72669 4.78835 4.84726 4.90420 4.95289 4.98895 5.03735 5.17497 5.22996 5.25003 5.27661 5.33533 5.35010 5.46656 5.47165 5.54029 5.54226 5.56136 5.66655 5.82784 5.83321 5.98175 6.07531 6.08516 6.17187 6.20174 6.27129 6.34600 6.49074 6.51823 6.71667 6.82426 7.11841 7.65015 7.81056 7.87678 8.36603 9.47969 10.05215 10.39712 11.40071 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002216 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.009479 B =12629.564029 C =14088.290373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.215 3.785 3 N -0.538 5.538 4 C 0.279 3.721 5 N -0.375 5.375 6 N -0.315 5.315 7 C 0.146 3.854 8 C -0.127 4.127 9 H 0.110 0.890 10 C 0.529 3.471 11 O -0.542 6.542 12 N -0.601 5.601 13 C 0.113 3.887 14 C -0.126 4.126 15 C -0.094 4.094 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.125 4.125 27 C 0.099 3.901 28 C -0.117 4.117 29 C -0.040 4.040 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.106 0.894 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.376 -10.567 9.395 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 N -0.266 5.266 4 C 0.002 3.998 5 N -0.165 5.165 6 N -0.144 5.144 7 C 0.024 3.976 8 C -0.149 4.149 9 H 0.128 0.872 10 C 0.315 3.685 11 O -0.419 6.419 12 N -0.333 5.333 13 C -0.009 4.009 14 C -0.165 4.165 15 C -0.113 4.113 16 C 0.030 3.970 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.163 4.163 27 C -0.023 4.023 28 C -0.156 4.156 29 C -0.079 4.079 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.117 0.883 50 H 0.124 0.876 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.539 -11.403 9.873 23.133 hybrid contribution 0.864 0.779 -0.521 1.275 sum -16.675 -10.624 9.352 21.872 Atomic orbital electron populations 1.20075 0.83842 1.03995 1.03659 1.24441 0.98272 0.85517 0.98439 1.70184 0.99832 1.30819 1.25780 1.24319 0.95061 0.83952 0.96447 1.50147 1.05673 1.05874 1.54834 1.77943 0.86458 1.22536 1.27430 1.21599 0.77716 0.93023 1.05282 1.21704 0.92820 0.96859 1.03551 0.87221 1.19906 0.84679 0.82968 0.80914 1.90716 1.84734 1.31344 1.35124 1.48121 1.08789 1.41679 1.34714 1.21676 0.81446 0.95467 1.02328 1.21921 0.98715 0.96754 0.99080 1.21314 0.95420 0.96678 0.97929 1.20665 0.94633 0.90693 0.90962 1.42363 1.46568 1.34188 1.14490 1.19223 1.13215 1.05063 0.99544 0.91264 1.24727 0.99950 0.99880 0.96420 1.69645 1.41935 1.41451 1.05248 0.86197 0.80696 0.82103 0.77250 1.21747 1.21754 1.20780 1.21940 0.93715 0.97007 1.03645 1.22027 1.00690 0.89770 0.89825 1.21720 0.99419 0.93842 1.00601 1.20419 0.86252 0.95855 1.05415 0.89931 0.89541 0.90074 0.88306 0.87742 0.91265 0.89125 0.90482 0.91509 0.90911 0.96370 0.96407 0.78297 0.93511 0.91610 0.89102 0.90693 0.89826 0.89870 0.88267 0.87566 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.22 2.55 8.15 -156.42 -1.27 1.28 16 3 N -0.54 -6.74 11.18 -8.03 -0.09 -6.83 16 4 C 0.28 3.02 7.72 -155.78 -1.20 1.82 16 5 N -0.37 -4.26 4.04 -58.29 -0.24 -4.50 16 6 N -0.31 -4.07 12.74 32.51 0.41 -3.66 16 7 C 0.15 1.38 6.31 -3.99 -0.03 1.36 16 8 C -0.13 -1.02 1.71 -91.53 -0.16 -1.18 16 9 H 0.11 0.75 6.27 -51.93 -0.33 0.42 16 10 C 0.53 5.49 6.79 -10.99 -0.07 5.42 16 11 O -0.54 -7.31 15.32 5.56 0.09 -7.22 16 12 N -0.60 -5.98 2.97 -172.77 -0.51 -6.49 16 13 C 0.11 1.16 6.42 -3.71 -0.02 1.14 16 14 C -0.13 -1.40 5.36 -26.61 -0.14 -1.54 16 15 C -0.09 -1.28 2.19 -90.58 -0.20 -1.48 16 16 C 0.16 2.89 5.65 -4.04 -0.02 2.86 16 17 N -0.73 -17.21 5.32 -59.91 -0.32 -17.53 16 18 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.12 -1.51 5.25 -26.61 -0.14 -1.65 16 27 C 0.10 0.91 6.27 -3.71 -0.02 0.89 16 28 C -0.12 -0.83 5.09 -26.43 -0.13 -0.96 16 29 C -0.04 -0.29 6.33 -27.55 -0.17 -0.46 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.06 7.51 -51.93 -0.39 0.68 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.99 7.04 -51.93 -0.37 0.62 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 9.34 6.84 -40.82 -0.28 9.06 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.31 7.15 -51.93 -0.37 0.94 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.60 5.35 -51.93 -0.28 0.32 16 48 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 49 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 50 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -34.09 401.23 -10.69 -44.78 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.32 Total: 4.63 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.46 Total: 0.40 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.02 Total: -65.41 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.09 Total: -7.22 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.09 -10.69 -44.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205743362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.926 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds