Wall clock time and date at job start Wed Apr 1 2020 05:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33475 * 125.49843 * 2 1 4 4 C 1.30322 * 109.72850 * 179.97438 * 3 2 1 5 5 N 1.34679 * 108.04233 * 0.06115 * 4 3 2 6 6 N 1.30976 * 125.49629 * 179.97438 * 2 1 3 7 7 C 1.46304 * 125.04368 * 179.89092 * 5 4 3 8 8 C 1.53309 * 108.77363 * 342.98079 * 7 5 4 9 9 H 1.08999 * 109.46753 * 290.13955 * 8 7 5 10 10 C 1.50693 * 109.46810 * 170.14433 * 8 7 5 11 11 O 1.21280 * 120.00053 * 335.32363 * 10 8 7 12 12 N 1.34782 * 120.00000 * 155.33216 * 10 8 7 13 13 C 1.46926 * 120.62803 * 175.30596 * 12 10 8 14 14 C 1.53198 * 108.77418 * 233.62517 * 13 12 10 15 15 C 1.53038 * 109.31097 * 305.36948 * 14 13 12 16 16 C 1.52999 * 109.46069 * 181.38228 * 15 14 13 17 17 N 1.46500 * 109.47503 * 174.99822 * 16 15 14 18 18 C 1.36936 * 120.00174 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00021 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00113 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99868 * 359.72224 * 20 18 17 22 22 Si 1.86805 * 120.00059 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46799 * 90.00250 * 22 20 18 24 24 H 1.48492 * 109.47196 * 209.99972 * 22 20 18 25 25 H 1.48498 * 109.46763 * 330.00404 * 22 20 18 26 26 C 1.53042 * 109.54141 * 61.36345 * 15 14 13 27 27 C 1.46921 * 120.62983 * 355.32419 * 12 10 8 28 28 C 1.53156 * 109.48206 * 50.13747 * 8 7 5 29 29 C 1.50927 * 127.90309 * 180.10430 * 4 3 2 30 30 H 1.09005 * 109.47053 * 270.00029 * 1 2 3 31 31 H 1.08993 * 109.47038 * 29.99689 * 1 2 3 32 32 H 1.09001 * 109.46874 * 150.00186 * 1 2 3 33 33 H 1.09005 * 109.58306 * 223.19938 * 7 5 4 34 34 H 1.08997 * 109.70744 * 102.84377 * 7 5 4 35 35 H 1.08997 * 109.58569 * 113.84325 * 13 12 10 36 36 H 1.09001 * 109.70681 * 353.48620 * 13 12 10 37 37 H 1.08996 * 109.49810 * 185.41531 * 14 13 12 38 38 H 1.09002 * 109.51816 * 65.33468 * 14 13 12 39 39 H 1.09007 * 109.46240 * 301.35523 * 15 14 13 40 40 H 1.09004 * 109.46753 * 54.99895 * 16 15 14 41 41 H 1.09005 * 109.47369 * 295.00362 * 16 15 14 42 42 H 0.96998 * 119.99777 * 0.02562 * 17 16 15 43 43 H 0.96997 * 119.99628 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.49820 * 58.58313 * 26 15 14 45 45 H 1.09002 * 109.49709 * 178.68385 * 26 15 14 46 46 H 1.09002 * 109.58971 * 246.15865 * 27 12 10 47 47 H 1.08997 * 109.58583 * 6.58437 * 27 12 10 48 48 H 1.08996 * 109.51052 * 50.75181 * 28 8 7 49 49 H 1.09003 * 109.50540 * 170.88748 * 28 8 7 50 50 H 1.08998 * 109.71750 * 283.69485 * 29 4 3 51 51 H 1.08999 * 109.71302 * 44.34986 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5363 0.7325 0.0005 5 7 3.5897 -0.6132 -0.0004 6 7 2.2676 -1.0663 0.0005 7 6 4.8198 -1.4052 -0.0025 8 6 5.9855 -0.5049 -0.4282 9 1 5.8849 -0.2555 -1.4845 10 6 7.2875 -1.2300 -0.2051 11 8 7.3551 -2.1146 0.6218 12 7 8.3771 -0.8953 -0.9244 13 6 9.6776 -1.5207 -0.6482 14 6 10.7163 -0.4181 -0.4194 15 6 10.7180 0.5323 -1.6188 16 6 11.7783 1.6153 -1.4096 17 7 11.8632 2.4538 -2.6078 18 6 12.7507 3.4957 -2.6530 19 1 13.3878 3.6995 -1.8051 20 6 12.8314 4.2898 -3.7886 21 7 12.0588 4.0381 -4.8241 22 14 14.0416 5.7115 -3.8500 23 1 15.3384 5.2345 -4.3939 24 1 13.5022 6.7833 -4.7248 25 1 14.2463 6.2468 -2.4800 26 6 9.3412 1.1866 -1.7555 27 6 8.2870 0.1022 -1.9994 28 6 5.9680 0.7809 0.4037 29 6 4.7522 1.6266 0.0029 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 4.7209 -2.2319 -0.7060 34 1 5.0067 -1.7966 0.9974 35 1 9.9764 -2.1334 -1.4987 36 1 9.6038 -2.1439 0.2431 37 1 11.7038 -0.8660 -0.3086 38 1 10.4651 0.1370 0.4844 39 1 10.9452 -0.0279 -2.5259 40 1 12.7449 1.1464 -1.2250 41 1 11.5041 2.2317 -0.5534 42 1 11.2907 2.2710 -3.3692 43 1 12.1151 4.5933 -5.6174 44 1 9.1024 1.7265 -0.8392 45 1 9.3501 1.8809 -2.5957 46 1 8.4724 -0.3781 -2.9601 47 1 7.2939 0.5514 -1.9987 48 1 5.9030 0.5288 1.4621 49 1 6.8814 1.3463 0.2190 50 1 4.9054 2.0416 -0.9932 51 1 4.6131 2.4344 0.7213 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205743362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:13 Heat of formation + Delta-G solvation = 31.596081 kcal Electronic energy + Delta-G solvation = -30913.292314 eV Core-core repulsion = 26848.108394 eV Total energy + Delta-G solvation = -4065.183920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.45572 -41.56687 -39.17530 -37.70328 -36.56328 -34.56911 -34.24935 -33.22006 -32.26565 -31.86169 -30.74554 -29.46996 -28.14092 -25.89060 -25.18558 -24.51110 -24.21087 -23.05430 -21.88916 -21.46380 -20.72897 -19.71512 -19.17256 -18.60932 -17.55266 -17.27705 -16.91388 -16.66173 -16.28198 -16.05264 -15.63977 -15.41835 -15.33219 -15.23253 -15.10140 -15.07392 -14.49785 -14.20665 -14.10712 -13.95676 -13.89504 -13.59897 -13.46710 -13.39336 -13.09797 -12.95615 -12.85603 -12.73775 -12.71074 -12.29960 -12.18925 -12.11951 -11.99787 -11.92757 -11.63538 -11.48818 -11.28433 -11.13754 -10.92141 -10.81993 -10.77883 -10.33087 -9.70604 -8.94194 -7.92633 -5.19519 0.52380 1.10132 1.42592 1.49760 1.50200 1.58557 1.78853 1.93850 2.58278 2.89992 3.06770 3.19675 3.41304 3.45184 3.69472 3.75270 3.76965 3.80110 3.92933 3.95923 4.13744 4.16295 4.19755 4.32468 4.36462 4.42002 4.46308 4.51714 4.62985 4.71462 4.72864 4.75967 4.80317 4.83414 4.87600 4.89475 4.92700 4.98734 5.00851 5.10163 5.12630 5.22300 5.28614 5.32628 5.45217 5.50889 5.58092 5.59734 5.74359 6.30236 6.31090 6.99306 7.04670 7.37945 8.15011 8.38576 9.30486 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002216 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.009479 B =12629.564029 C =14088.290373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.206 3.794 3 N -0.564 5.564 4 C 0.276 3.724 5 N -0.381 5.381 6 N -0.349 5.349 7 C 0.148 3.852 8 C -0.117 4.117 9 H 0.129 0.871 10 C 0.532 3.468 11 O -0.574 6.574 12 N -0.598 5.598 13 C 0.115 3.885 14 C -0.115 4.115 15 C -0.085 4.085 16 C 0.156 3.844 17 N -0.741 5.741 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.073 4.073 21 N -0.965 5.965 22 Si 0.967 3.033 23 H -0.290 1.290 24 H -0.295 1.295 25 H -0.272 1.272 26 C -0.119 4.119 27 C 0.106 3.894 28 C -0.111 4.111 29 C -0.035 4.035 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.014 0.986 41 H 0.018 0.982 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.111 0.889 48 H 0.076 0.924 49 H 0.112 0.888 50 H 0.126 0.874 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.660 -10.221 9.782 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 N -0.294 5.294 4 C 0.000 4.000 5 N -0.172 5.172 6 N -0.178 5.178 7 C 0.026 3.974 8 C -0.139 4.139 9 H 0.147 0.853 10 C 0.320 3.680 11 O -0.454 6.454 12 N -0.330 5.330 13 C -0.007 4.007 14 C -0.154 4.154 15 C -0.104 4.104 16 C 0.030 3.970 17 N -0.384 5.384 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.265 4.265 21 N -0.616 5.616 22 Si 0.797 3.203 23 H -0.217 1.217 24 H -0.222 1.222 25 H -0.197 1.197 26 C -0.157 4.157 27 C -0.016 4.016 28 C -0.149 4.149 29 C -0.075 4.075 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.032 0.968 41 H 0.036 0.964 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.129 0.871 48 H 0.095 0.905 49 H 0.131 0.869 50 H 0.144 0.856 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.809 -11.073 10.291 23.360 hybrid contribution 0.979 0.632 -0.571 1.298 sum -16.831 -10.441 9.720 22.063 Atomic orbital electron populations 1.20238 0.81467 1.04963 1.04752 1.25196 0.99841 0.85157 0.97405 1.70216 1.00702 1.31408 1.27035 1.25012 0.95729 0.84161 0.95056 1.50226 1.05582 1.06302 1.55068 1.77881 0.87356 1.23638 1.28905 1.21605 0.77718 0.93356 1.04754 1.21652 0.90794 0.96638 1.04793 0.85341 1.20185 0.85243 0.82457 0.80115 1.90711 1.85280 1.32888 1.36521 1.48146 1.08639 1.41536 1.34667 1.21630 0.81346 0.95102 1.02612 1.21814 0.99547 0.96367 0.97654 1.21200 0.94849 0.95597 0.98787 1.20828 0.96053 0.91236 0.88914 1.42538 1.45801 1.34198 1.15865 1.19590 1.13107 1.05490 0.99312 0.91102 1.25464 1.02018 1.02578 0.96456 1.69780 1.43661 1.42534 1.05659 0.85229 0.78472 0.79179 0.77427 1.21749 1.22175 1.19653 1.21827 0.93685 0.97411 1.02821 1.22028 1.01079 0.88790 0.89688 1.21698 0.99918 0.93286 1.00029 1.20605 0.84515 0.95416 1.06916 0.88670 0.88564 0.89058 0.88211 0.88892 0.90360 0.89511 0.89828 0.91532 0.91541 0.96822 0.96448 0.79061 0.94046 0.91196 0.91494 0.90093 0.87118 0.90521 0.86950 0.85640 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.51 71.24 0.75 -0.03 16 2 C 0.21 4.77 8.15 138.48 1.13 5.90 16 3 N -0.56 -13.63 11.18 -179.31 -2.01 -15.63 16 4 C 0.28 5.63 7.72 138.37 1.07 6.70 16 5 N -0.38 -8.39 4.04 -338.32 -1.37 -9.76 16 6 N -0.35 -8.94 12.74 -51.07 -0.65 -9.59 16 7 C 0.15 2.67 6.31 86.52 0.55 3.22 16 8 C -0.12 -1.63 1.71 -11.39 -0.02 -1.65 16 9 H 0.13 1.33 6.27 -2.39 -0.01 1.32 16 10 C 0.53 10.04 6.79 87.65 0.60 10.64 16 11 O -0.57 -14.89 15.32 -3.03 -0.05 -14.94 16 12 N -0.60 -10.52 2.97 -818.92 -2.43 -12.96 16 13 C 0.12 2.15 6.42 86.36 0.55 2.70 16 14 C -0.12 -2.34 5.36 30.67 0.16 -2.18 16 15 C -0.09 -2.20 2.19 -10.77 -0.02 -2.23 16 16 C 0.16 5.58 5.65 86.38 0.49 6.07 16 17 N -0.74 -34.76 5.32 -343.44 -1.83 -36.58 16 18 C -0.24 -12.98 9.99 84.03 0.84 -12.15 16 19 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 20 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 21 N -0.97 -56.40 13.06 21.65 0.28 -56.12 16 22 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C -0.12 -2.67 5.25 30.67 0.16 -2.50 16 27 C 0.11 1.67 6.27 86.36 0.54 2.21 16 28 C -0.11 -1.29 5.09 30.79 0.16 -1.13 16 29 C -0.04 -0.42 6.33 30.06 0.19 -0.23 16 30 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.09 1.90 7.51 -2.39 -0.02 1.88 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.75 7.04 -2.39 -0.02 1.74 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.38 18.49 6.84 -92.71 -0.63 17.85 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 45 H 0.07 1.87 7.15 -2.39 -0.02 1.85 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.11 1.17 5.35 -2.39 -0.01 1.15 16 48 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 49 H 0.11 1.07 8.10 -2.39 -0.02 1.05 16 50 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.65 401.23 1.89 -71.76 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.30 Total: 25.31 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 7.61 Total: 11.80 kcal Atomic # 7 Polarization: -132.64 SS G_CDS: -8.00 Total: -140.64 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.05 Total: -14.94 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.65 1.89 -71.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205743362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.359 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds