Wall clock time and date at job start Wed Apr 1 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30841 * 126.46636 * 2 1 4 4 N 1.28909 * 109.74283 * 179.97438 * 3 2 1 5 5 C 1.29841 * 109.47615 * 359.97438 * 4 3 2 6 6 N 1.34696 * 126.46631 * 180.02562 * 2 1 3 7 7 C 1.46258 * 128.84509 * 0.15065 * 6 2 1 8 8 C 1.53328 * 108.72619 * 162.90906 * 7 6 2 9 9 H 1.08993 * 109.45447 * 290.26889 * 8 7 6 10 10 C 1.50702 * 109.45052 * 170.30821 * 8 7 6 11 11 O 1.21281 * 120.00182 * 264.69304 * 10 8 7 12 12 N 1.34780 * 119.99487 * 84.69604 * 10 8 7 13 13 C 1.46919 * 120.63334 * 4.42131 * 12 10 8 14 14 C 1.52764 * 109.00524 * 233.58477 * 13 12 10 15 15 C 1.53042 * 109.38300 * 305.58663 * 14 13 12 16 16 C 1.53002 * 109.44777 * 181.25327 * 15 14 13 17 17 N 1.46509 * 109.46897 * 64.93996 * 16 15 14 18 18 C 1.36939 * 119.99663 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00197 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99628 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99993 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99900 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47151 * 89.99996 * 22 20 18 24 24 H 1.48495 * 109.47257 * 210.00331 * 22 20 18 25 25 H 1.48503 * 109.47149 * 330.00202 * 22 20 18 26 26 C 1.53033 * 109.53685 * 61.24340 * 15 14 13 27 27 C 1.46927 * 120.62410 * 184.70127 * 12 10 8 28 28 C 1.53144 * 109.57582 * 50.30313 * 8 7 6 29 29 C 1.50806 * 128.51970 * 180.15538 * 5 4 3 30 30 H 1.09004 * 109.46635 * 269.99416 * 1 2 3 31 31 H 1.08999 * 109.46947 * 29.99229 * 1 2 3 32 32 H 1.08997 * 109.46912 * 149.99661 * 1 2 3 33 33 H 1.08999 * 109.59627 * 43.14434 * 7 6 2 34 34 H 1.08997 * 109.72169 * 282.75681 * 7 6 2 35 35 H 1.09000 * 109.58723 * 353.41448 * 13 12 10 36 36 H 1.09000 * 109.58912 * 113.84852 * 13 12 10 37 37 H 1.09006 * 109.56384 * 185.55242 * 14 13 12 38 38 H 1.09002 * 109.38698 * 65.51720 * 14 13 12 39 39 H 1.08998 * 109.46067 * 301.21596 * 15 14 13 40 40 H 1.09001 * 109.47352 * 184.93585 * 16 15 14 41 41 H 1.08998 * 109.47213 * 304.94165 * 16 15 14 42 42 H 0.97000 * 119.99908 * 0.02562 * 17 16 15 43 43 H 0.96994 * 120.00026 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.49834 * 178.68177 * 26 15 14 45 45 H 1.09004 * 109.53109 * 58.60138 * 26 15 14 46 46 H 1.09004 * 109.58505 * 246.15348 * 27 12 10 47 47 H 1.09000 * 109.59007 * 6.57858 * 27 12 10 48 48 H 1.08997 * 109.50143 * 50.49962 * 28 8 7 49 49 H 1.08994 * 109.50077 * 170.61322 * 28 8 7 50 50 H 1.08998 * 109.72890 * 283.73729 * 29 5 4 51 51 H 1.08998 * 109.73022 * 44.42276 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6813 0.0005 5 6 3.5816 -0.6156 0.0015 6 7 2.3076 -1.0832 -0.0005 7 6 1.9367 -2.4980 -0.0041 8 6 3.1554 -3.3253 -0.4300 9 1 3.3631 -3.1489 -1.4853 10 6 2.8694 -4.7888 -0.2124 11 8 3.2282 -5.3312 0.8113 12 7 2.2148 -5.4949 -1.1555 13 6 1.8591 -4.8778 -2.4405 14 6 0.3616 -5.0592 -2.6819 15 6 0.0066 -6.5442 -2.5777 16 6 -1.4874 -6.7312 -2.8501 17 7 -1.7817 -6.3570 -4.2357 18 6 -3.0631 -6.4434 -4.7107 19 1 -3.8567 -6.7878 -4.0642 20 6 -3.3420 -6.0884 -6.0234 21 7 -2.3748 -5.6692 -6.8115 22 14 -5.0899 -6.2069 -6.6718 23 1 -5.7935 -4.9206 -6.4361 24 1 -5.0591 -6.4947 -8.1282 25 1 -5.8065 -7.2997 -5.9663 26 6 0.3359 -7.0518 -1.1721 27 6 1.8380 -6.8946 -0.9156 28 6 4.3717 -2.9142 0.4049 29 6 4.8052 -1.4971 0.0056 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3633 -0.8899 -0.5139 33 1 1.1208 -2.6602 -0.7084 34 1 1.6222 -2.7984 0.9953 35 1 2.0972 -3.8145 -2.4135 36 1 2.4168 -5.3591 -3.2438 37 1 0.1051 -4.6927 -3.6759 38 1 -0.1963 -4.4982 -1.9321 39 1 0.5827 -7.1077 -3.3116 40 1 -1.7580 -7.7749 -2.6903 41 1 -2.0620 -6.0990 -2.1732 42 1 -1.0687 -6.0488 -4.8167 43 1 -2.5696 -5.4215 -7.7288 44 1 0.0611 -8.1035 -1.0913 45 1 -0.2214 -6.4727 -0.4357 46 1 2.3940 -7.5438 -1.5921 47 1 2.0624 -7.1617 0.1171 48 1 4.1092 -2.9301 1.4626 49 1 5.1905 -3.6100 0.2221 50 1 5.2491 -1.5150 -0.9898 51 1 5.5300 -1.1172 0.7256 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206945907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:57 Heat of formation + Delta-G solvation = 43.760255 kcal Electronic energy + Delta-G solvation = -31465.370785 eV Core-core repulsion = 27400.714343 eV Total energy + Delta-G solvation = -4064.656442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.58884 -40.80219 -38.28599 -37.03316 -35.12995 -34.41975 -33.09895 -32.04781 -31.39932 -30.62531 -30.37838 -27.66430 -26.97295 -25.41271 -24.10470 -23.53123 -23.18118 -21.98340 -21.49581 -20.59386 -19.98378 -18.96432 -17.84867 -17.28806 -17.07318 -16.71606 -16.12941 -15.66504 -15.15541 -14.93106 -14.69913 -14.59247 -14.43864 -14.29665 -14.04604 -13.87018 -13.75671 -13.48585 -13.23924 -12.96813 -12.90487 -12.62874 -12.58447 -12.41701 -12.36341 -11.98137 -11.81156 -11.63196 -11.46991 -11.31016 -11.09967 -10.91425 -10.56514 -10.54453 -10.50979 -10.46786 -10.41092 -10.11420 -10.01116 -9.74671 -9.20235 -8.95980 -8.88572 -7.01111 -5.85503 -3.14046 1.53907 1.91746 2.30290 2.61421 2.65407 3.37472 3.43269 3.44585 3.72740 3.84034 3.91872 4.01246 4.17208 4.39957 4.50452 4.52868 4.61667 4.64656 4.72926 4.84489 4.85718 4.88870 4.96570 5.02384 5.14925 5.17450 5.21441 5.29009 5.38719 5.42125 5.44070 5.51292 5.55662 5.60161 5.62522 5.69467 5.77077 5.77834 5.92491 5.94695 6.01687 6.11970 6.21622 6.27939 6.46104 6.56086 6.67140 6.77305 7.06491 7.62238 7.76822 8.33716 8.51735 9.45164 10.01948 10.36395 11.37336 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.002722 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.236516 B =10282.834810 C =12041.036303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.183 3.817 3 N -0.299 5.299 4 N -0.290 5.290 5 C 0.173 3.827 6 N -0.468 5.468 7 C 0.117 3.883 8 C -0.125 4.125 9 H 0.109 0.891 10 C 0.525 3.475 11 O -0.535 6.535 12 N -0.603 5.603 13 C 0.100 3.900 14 C -0.126 4.126 15 C -0.094 4.094 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.126 4.126 27 C 0.112 3.888 28 C -0.106 4.106 29 C -0.033 4.033 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.207 3.869 14.820 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.084 4.084 3 N -0.140 5.140 4 N -0.129 5.129 5 C -0.094 4.094 6 N -0.160 5.160 7 C -0.006 4.006 8 C -0.147 4.147 9 H 0.127 0.873 10 C 0.311 3.689 11 O -0.412 6.412 12 N -0.336 5.336 13 C -0.023 4.023 14 C -0.164 4.164 15 C -0.113 4.113 16 C 0.031 3.969 17 N -0.376 5.376 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.165 4.165 27 C -0.010 4.010 28 C -0.145 4.145 29 C -0.072 4.072 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.111 0.889 50 H 0.115 0.885 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.621 4.980 15.341 21.112 hybrid contribution -1.336 -1.311 -0.858 2.059 sum 12.286 3.669 14.484 19.344 Atomic orbital electron populations 1.20268 0.83466 1.05001 1.04164 1.24730 0.97169 0.82579 1.03915 1.74505 0.96072 1.23581 1.19821 1.74053 1.12361 1.07961 1.18524 1.24715 0.86983 0.92596 1.05123 1.45906 1.07102 1.08027 1.54976 1.21835 0.97682 0.76402 1.04700 1.21710 0.96504 0.92830 1.03661 0.87307 1.20014 0.77950 0.87670 0.83237 1.90716 1.51704 1.71308 1.27490 1.48208 1.55950 1.13229 1.16171 1.21922 0.97599 0.98142 0.84617 1.21873 0.93218 0.97490 1.03802 1.21309 0.98579 0.95431 0.95979 1.20662 0.91079 0.97101 0.88083 1.42368 1.07989 1.79806 1.07481 1.19216 0.86050 1.37030 0.94881 0.91267 1.24726 0.97523 1.02076 0.96553 1.69639 1.30748 1.50922 1.06926 0.86203 0.84283 0.77694 0.78092 1.21687 1.21735 1.20776 1.21923 0.94687 1.02181 0.97686 1.21688 0.95654 0.80785 1.02834 1.21573 0.96700 0.95565 1.00613 1.20266 0.91225 0.91146 1.04589 0.89494 0.88408 0.90109 0.87735 0.88406 0.90188 0.90539 0.89049 0.91886 0.90823 0.96321 0.96467 0.78307 0.93476 0.90399 0.91580 0.91208 0.89105 0.89902 0.88942 0.88454 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.29 36.01 0.37 -0.16 16 2 C 0.18 2.05 8.07 -155.45 -1.25 0.80 16 3 N -0.30 -4.31 12.23 32.70 0.40 -3.91 16 4 N -0.29 -4.12 12.21 32.76 0.40 -3.72 16 5 C 0.17 1.89 7.75 -155.30 -1.20 0.69 16 6 N -0.47 -4.66 3.11 -110.85 -0.35 -5.00 16 7 C 0.12 0.90 5.96 -4.00 -0.02 0.87 16 8 C -0.13 -0.94 1.70 -91.53 -0.16 -1.09 16 9 H 0.11 0.71 6.27 -51.93 -0.33 0.39 16 10 C 0.53 5.15 6.77 -10.98 -0.07 5.07 16 11 O -0.54 -6.90 15.69 5.56 0.09 -6.81 16 12 N -0.60 -5.73 2.98 -173.03 -0.52 -6.25 16 13 C 0.10 0.90 6.24 -3.93 -0.02 0.87 16 14 C -0.13 -1.49 5.23 -26.83 -0.14 -1.63 16 15 C -0.09 -1.25 2.19 -90.58 -0.20 -1.44 16 16 C 0.16 2.85 5.65 -4.04 -0.02 2.82 16 17 N -0.73 -17.09 5.32 -59.90 -0.32 -17.41 16 18 C -0.24 -6.42 9.99 -15.06 -0.15 -6.58 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 22 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.13 -1.35 5.36 -26.61 -0.14 -1.49 16 27 C 0.11 1.11 6.42 -3.71 -0.02 1.08 16 28 C -0.11 -0.74 4.65 -26.41 -0.12 -0.86 16 29 C -0.03 -0.23 6.34 -27.58 -0.17 -0.41 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.50 7.76 -51.93 -0.40 0.10 16 33 H 0.10 0.71 7.50 -51.93 -0.39 0.32 16 34 H 0.10 0.74 8.12 -51.93 -0.42 0.31 16 35 H 0.08 0.59 5.09 -51.93 -0.26 0.32 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.32 7.15 -51.93 -0.37 0.95 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.38 9.29 6.84 -40.82 -0.28 9.01 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.95 7.03 -51.93 -0.37 0.58 16 48 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 49 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -34.36 399.40 -10.29 -44.65 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.28 Total: 3.94 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.44 Total: -1.90 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: 0.35 Total: -62.57 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: 0.09 Total: -6.81 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.36 -10.29 -44.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206945907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.408 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds