Wall clock time and date at job start Wed Apr 1 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30841 * 126.46636 * 2 1 4 4 N 1.28909 * 109.74283 * 179.97438 * 3 2 1 5 5 C 1.29841 * 109.47615 * 359.97438 * 4 3 2 6 6 N 1.34696 * 126.46631 * 180.02562 * 2 1 3 7 7 C 1.46258 * 128.84509 * 0.15065 * 6 2 1 8 8 C 1.53328 * 108.72619 * 162.90906 * 7 6 2 9 9 H 1.08993 * 109.45447 * 290.26889 * 8 7 6 10 10 C 1.50702 * 109.45052 * 170.30821 * 8 7 6 11 11 O 1.21281 * 120.00182 * 264.69304 * 10 8 7 12 12 N 1.34780 * 119.99487 * 84.69604 * 10 8 7 13 13 C 1.46919 * 120.63334 * 4.42131 * 12 10 8 14 14 C 1.52764 * 109.00524 * 233.58477 * 13 12 10 15 15 C 1.53042 * 109.38300 * 305.58663 * 14 13 12 16 16 C 1.53002 * 109.44777 * 181.25327 * 15 14 13 17 17 N 1.46509 * 109.46897 * 64.93996 * 16 15 14 18 18 C 1.36939 * 119.99663 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00197 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99628 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99993 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99900 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47151 * 89.99996 * 22 20 18 24 24 H 1.48495 * 109.47257 * 210.00331 * 22 20 18 25 25 H 1.48503 * 109.47149 * 330.00202 * 22 20 18 26 26 C 1.53033 * 109.53685 * 61.24340 * 15 14 13 27 27 C 1.46927 * 120.62410 * 184.70127 * 12 10 8 28 28 C 1.53144 * 109.57582 * 50.30313 * 8 7 6 29 29 C 1.50806 * 128.51970 * 180.15538 * 5 4 3 30 30 H 1.09004 * 109.46635 * 269.99416 * 1 2 3 31 31 H 1.08999 * 109.46947 * 29.99229 * 1 2 3 32 32 H 1.08997 * 109.46912 * 149.99661 * 1 2 3 33 33 H 1.08999 * 109.59627 * 43.14434 * 7 6 2 34 34 H 1.08997 * 109.72169 * 282.75681 * 7 6 2 35 35 H 1.09000 * 109.58723 * 353.41448 * 13 12 10 36 36 H 1.09000 * 109.58912 * 113.84852 * 13 12 10 37 37 H 1.09006 * 109.56384 * 185.55242 * 14 13 12 38 38 H 1.09002 * 109.38698 * 65.51720 * 14 13 12 39 39 H 1.08998 * 109.46067 * 301.21596 * 15 14 13 40 40 H 1.09001 * 109.47352 * 184.93585 * 16 15 14 41 41 H 1.08998 * 109.47213 * 304.94165 * 16 15 14 42 42 H 0.97000 * 119.99908 * 0.02562 * 17 16 15 43 43 H 0.96994 * 120.00026 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.49834 * 178.68177 * 26 15 14 45 45 H 1.09004 * 109.53109 * 58.60138 * 26 15 14 46 46 H 1.09004 * 109.58505 * 246.15348 * 27 12 10 47 47 H 1.09000 * 109.59007 * 6.57858 * 27 12 10 48 48 H 1.08997 * 109.50143 * 50.49962 * 28 8 7 49 49 H 1.08994 * 109.50077 * 170.61322 * 28 8 7 50 50 H 1.08998 * 109.72890 * 283.73729 * 29 5 4 51 51 H 1.08998 * 109.73022 * 44.42276 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6813 0.0005 5 6 3.5816 -0.6156 0.0015 6 7 2.3076 -1.0832 -0.0005 7 6 1.9367 -2.4980 -0.0041 8 6 3.1554 -3.3253 -0.4300 9 1 3.3631 -3.1489 -1.4853 10 6 2.8694 -4.7888 -0.2124 11 8 3.2282 -5.3312 0.8113 12 7 2.2148 -5.4949 -1.1555 13 6 1.8591 -4.8778 -2.4405 14 6 0.3616 -5.0592 -2.6819 15 6 0.0066 -6.5442 -2.5777 16 6 -1.4874 -6.7312 -2.8501 17 7 -1.7817 -6.3570 -4.2357 18 6 -3.0631 -6.4434 -4.7107 19 1 -3.8567 -6.7878 -4.0642 20 6 -3.3420 -6.0884 -6.0234 21 7 -2.3748 -5.6692 -6.8115 22 14 -5.0899 -6.2069 -6.6718 23 1 -5.7935 -4.9206 -6.4361 24 1 -5.0591 -6.4947 -8.1282 25 1 -5.8065 -7.2997 -5.9663 26 6 0.3359 -7.0518 -1.1721 27 6 1.8380 -6.8946 -0.9156 28 6 4.3717 -2.9142 0.4049 29 6 4.8052 -1.4971 0.0056 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3633 -0.8899 -0.5139 33 1 1.1208 -2.6602 -0.7084 34 1 1.6222 -2.7984 0.9953 35 1 2.0972 -3.8145 -2.4135 36 1 2.4168 -5.3591 -3.2438 37 1 0.1051 -4.6927 -3.6759 38 1 -0.1963 -4.4982 -1.9321 39 1 0.5827 -7.1077 -3.3116 40 1 -1.7580 -7.7749 -2.6903 41 1 -2.0620 -6.0990 -2.1732 42 1 -1.0687 -6.0488 -4.8167 43 1 -2.5696 -5.4215 -7.7288 44 1 0.0611 -8.1035 -1.0913 45 1 -0.2214 -6.4727 -0.4357 46 1 2.3940 -7.5438 -1.5921 47 1 2.0624 -7.1617 0.1171 48 1 4.1092 -2.9301 1.4626 49 1 5.1905 -3.6100 0.2221 50 1 5.2491 -1.5150 -0.9898 51 1 5.5300 -1.1172 0.7256 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206945907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:55 Heat of formation + Delta-G solvation = 23.526183 kcal Electronic energy + Delta-G solvation = -31466.248200 eV Core-core repulsion = 27400.714343 eV Total energy + Delta-G solvation = -4065.533857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.40213 -41.60263 -39.22758 -37.82208 -36.57611 -35.14382 -34.52291 -32.98236 -32.26258 -31.94188 -31.28280 -28.46841 -28.20224 -26.30197 -25.39069 -24.45633 -24.16594 -23.10467 -22.37850 -21.56427 -20.81630 -19.75698 -19.16948 -18.49424 -17.96662 -17.52621 -16.90019 -16.70923 -16.37457 -15.91858 -15.65907 -15.52388 -15.33328 -15.22900 -15.20813 -15.04044 -14.76015 -14.36242 -14.05234 -13.97130 -13.91216 -13.57141 -13.47651 -13.28455 -13.12149 -13.00856 -12.90731 -12.74914 -12.62304 -12.32031 -12.19212 -12.11816 -12.05666 -11.94502 -11.66958 -11.50309 -11.38147 -11.31309 -11.18113 -10.93250 -10.83801 -10.04624 -9.71935 -8.96299 -7.94436 -5.21471 0.76484 1.17755 1.48729 1.48811 1.56193 1.57208 1.75565 1.88398 2.56767 3.06546 3.15240 3.28222 3.39712 3.41747 3.50967 3.70640 3.76919 3.84406 3.92535 3.95483 4.01092 4.10755 4.16869 4.22133 4.31025 4.38550 4.44114 4.48013 4.60382 4.60777 4.63144 4.73473 4.80963 4.82082 4.86210 4.88346 4.95228 4.96254 4.97936 5.06456 5.07086 5.10875 5.18656 5.21286 5.28943 5.48683 5.55366 5.56496 5.84321 6.28704 6.29866 7.00273 7.36125 7.65568 8.13039 8.36205 9.28695 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.002722 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.236516 B =10282.834810 C =12041.036303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.183 3.817 3 N -0.346 5.346 4 N -0.334 5.334 5 C 0.176 3.824 6 N -0.467 5.467 7 C 0.117 3.883 8 C -0.119 4.119 9 H 0.125 0.875 10 C 0.531 3.469 11 O -0.565 6.565 12 N -0.601 5.601 13 C 0.108 3.892 14 C -0.120 4.120 15 C -0.084 4.084 16 C 0.156 3.844 17 N -0.742 5.742 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.071 4.071 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.287 1.287 24 H -0.297 1.297 25 H -0.272 1.272 26 C -0.116 4.116 27 C 0.115 3.885 28 C -0.099 4.099 29 C -0.028 4.028 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.015 0.985 41 H 0.017 0.983 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.103 0.897 50 H 0.116 0.884 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.437 3.081 15.503 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 N -0.186 5.186 4 N -0.173 5.173 5 C -0.093 4.093 6 N -0.159 5.159 7 C -0.006 4.006 8 C -0.141 4.141 9 H 0.143 0.857 10 C 0.318 3.682 11 O -0.444 6.444 12 N -0.333 5.333 13 C -0.014 4.014 14 C -0.159 4.159 15 C -0.103 4.103 16 C 0.030 3.970 17 N -0.385 5.385 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.796 3.204 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.197 1.197 26 C -0.154 4.154 27 C -0.007 4.007 28 C -0.137 4.137 29 C -0.067 4.067 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.090 0.910 49 H 0.121 0.879 50 H 0.134 0.866 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.844 4.180 16.059 21.611 hybrid contribution -1.427 -1.133 -0.998 2.077 sum 12.417 3.047 15.060 19.756 Atomic orbital electron populations 1.20435 0.81201 1.05820 1.05361 1.25311 0.98408 0.82342 1.02458 1.74402 0.96713 1.25480 1.21980 1.73948 1.12753 1.09898 1.20671 1.25352 0.88358 0.92219 1.03330 1.46020 1.06683 1.08602 1.54565 1.21969 0.98114 0.75110 1.05364 1.21686 0.96601 0.91092 1.04697 0.85750 1.20257 0.77181 0.88264 0.82495 1.90715 1.52945 1.72093 1.28662 1.48227 1.55670 1.13124 1.16254 1.21870 0.95379 0.99622 0.84531 1.21761 0.95484 0.96243 1.02388 1.21190 0.95028 0.96655 0.97469 1.20831 0.94472 0.96423 0.85284 1.42552 1.06786 1.79702 1.09451 1.19585 0.87475 1.35501 0.94976 0.91076 1.25455 1.00960 1.02896 0.97084 1.69776 1.32425 1.52576 1.06881 0.85243 0.80360 0.77797 0.76991 1.21445 1.22334 1.19736 1.21820 0.95487 1.02491 0.95616 1.21641 0.94840 0.81251 1.02946 1.21518 0.96811 0.95562 0.99847 1.20437 0.89936 0.90307 1.06030 0.88025 0.88315 0.88508 0.86450 0.88107 0.87958 0.89928 0.91719 0.91449 0.91468 0.96729 0.96457 0.79118 0.94049 0.89725 0.91509 0.90328 0.89316 0.90966 0.87873 0.86597 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.29 71.24 0.73 -0.21 16 2 C 0.18 3.95 8.07 138.14 1.11 5.07 16 3 N -0.35 -10.05 12.23 -50.46 -0.62 -10.67 16 4 N -0.33 -9.52 12.21 -50.27 -0.61 -10.14 16 5 C 0.18 3.64 7.75 138.14 1.07 4.71 16 6 N -0.47 -8.57 3.11 -504.63 -1.57 -10.14 16 7 C 0.12 1.50 5.96 86.54 0.52 2.02 16 8 C -0.12 -1.44 1.70 -11.38 -0.02 -1.46 16 9 H 0.12 1.16 6.27 -2.39 -0.01 1.14 16 10 C 0.53 8.96 6.77 87.66 0.59 9.56 16 11 O -0.57 -13.33 15.69 -3.03 -0.05 -13.38 16 12 N -0.60 -9.76 2.98 -819.73 -2.44 -12.20 16 13 C 0.11 1.66 6.24 86.22 0.54 2.19 16 14 C -0.12 -2.66 5.23 30.53 0.16 -2.50 16 15 C -0.08 -2.12 2.19 -10.77 -0.02 -2.14 16 16 C 0.16 5.49 5.65 86.38 0.49 5.98 16 17 N -0.74 -34.56 5.32 -343.42 -1.83 -36.39 16 18 C -0.24 -12.93 9.99 84.03 0.84 -12.09 16 19 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.97 -56.34 13.06 21.65 0.28 -56.06 16 22 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C -0.12 -2.22 5.36 30.67 0.16 -2.05 16 27 C 0.12 1.99 6.42 86.36 0.55 2.54 16 28 C -0.10 -1.14 4.65 30.80 0.14 -1.00 16 29 C -0.03 -0.33 6.34 30.04 0.19 -0.14 16 30 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 0.99 7.76 -2.39 -0.02 0.97 16 33 H 0.12 1.22 7.50 -2.39 -0.02 1.21 16 34 H 0.10 1.28 8.12 -2.39 -0.02 1.26 16 35 H 0.10 1.15 5.09 -2.39 -0.01 1.13 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.82 7.15 -2.38 -0.02 1.81 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.38 18.40 6.84 -92.71 -0.63 17.77 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.09 1.64 7.03 -2.39 -0.02 1.63 16 48 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 49 H 0.10 1.02 8.11 -2.39 -0.02 1.00 16 50 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -75.00 399.40 3.03 -71.97 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.30 Total: 23.45 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 7.53 Total: 7.01 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -6.79 Total: -135.58 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.05 Total: -13.38 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -75.00 3.03 -71.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206945907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.501 kcal (2) G-P(sol) polarization free energy of solvation -75.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds