Wall clock time and date at job start Wed Apr 1 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33243 * 125.52732 * 2 1 4 4 C 1.30832 * 109.82983 * 179.79453 * 3 2 1 5 5 C 1.50705 * 125.96198 * 180.23403 * 4 3 2 6 6 N 1.34432 * 108.07710 * 0.39079 * 4 3 2 7 7 C 1.46498 * 126.82239 * 179.88731 * 6 4 3 8 8 C 1.52995 * 109.47256 * 269.70703 * 7 6 4 9 9 C 1.53003 * 109.47339 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47577 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99765 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00127 * 180.27851 * 10 9 8 13 13 C 1.47286 * 136.54407 * 359.71540 * 12 10 9 14 14 C 1.54084 * 87.60218 * 151.35466 * 13 12 10 15 15 H 1.09004 * 115.04120 * 141.63133 * 14 13 12 16 16 C 1.53069 * 111.39323 * 273.97502 * 14 13 12 17 17 C 1.52000 * 109.68744 * 142.52240 * 16 14 13 18 18 N 1.46540 * 108.10462 * 301.56304 * 17 16 14 19 19 C 1.36944 * 119.73881 * 236.29816 * 18 17 16 20 20 H 1.08008 * 119.99411 * 25.20034 * 19 18 17 21 21 C 1.38805 * 120.00279 * 205.20049 * 19 18 17 22 22 N 1.31619 * 120.00007 * 14.49200 * 21 19 18 23 23 Si 1.86802 * 120.00179 * 194.49142 * 21 19 18 24 24 H 1.48494 * 109.47139 * 90.00151 * 23 21 19 25 25 H 1.48497 * 109.47116 * 210.00370 * 23 21 19 26 26 H 1.48505 * 109.47017 * 329.99955 * 23 21 19 27 27 C 1.45703 * 120.52821 * 56.32015 * 18 17 16 28 28 C 1.46464 * 136.53955 * 179.35236 * 12 10 9 29 29 H 1.08997 * 111.44200 * 96.39747 * 28 12 10 30 30 N 1.30721 * 125.52843 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47322 * 269.95475 * 1 2 3 32 32 H 1.09001 * 109.47334 * 29.95771 * 1 2 3 33 33 H 1.08999 * 109.47026 * 149.95435 * 1 2 3 34 34 H 1.08997 * 109.47472 * 270.17900 * 5 4 3 35 35 H 1.09002 * 109.46488 * 30.18598 * 5 4 3 36 36 H 1.09001 * 109.46471 * 150.17804 * 5 4 3 37 37 H 1.09001 * 109.46956 * 149.70501 * 7 6 4 38 38 H 1.09002 * 109.46916 * 29.70973 * 7 6 4 39 39 H 1.09009 * 109.47232 * 60.00327 * 8 7 6 40 40 H 1.08994 * 109.47607 * 300.00221 * 8 7 6 41 41 H 1.09001 * 109.46960 * 59.99744 * 9 8 7 42 42 H 1.09002 * 109.46828 * 300.00267 * 9 8 7 43 43 H 1.08993 * 113.53365 * 266.03968 * 13 12 10 44 44 H 1.09003 * 113.52661 * 36.67163 * 13 12 10 45 45 H 1.09008 * 109.51330 * 262.32752 * 16 14 13 46 46 H 1.08996 * 109.51324 * 22.48159 * 16 14 13 47 47 H 1.08998 * 109.87858 * 181.86488 * 17 16 14 48 48 H 1.08996 * 109.68177 * 61.14815 * 17 16 14 49 49 H 0.97003 * 120.00364 * 179.97438 * 22 21 19 50 50 H 1.08992 * 108.78950 * 199.09282 * 27 18 17 51 51 H 1.09001 * 108.78232 * 80.88292 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7304 0.0044 5 6 4.7227 1.6653 0.0109 6 7 3.5965 -0.6127 -0.0013 7 6 4.8047 -1.4413 -0.0016 8 6 5.2252 -1.7295 -1.4441 9 6 6.4866 -2.5953 -1.4444 10 6 6.9012 -2.8787 -2.8653 11 8 6.2514 -2.4325 -3.7870 12 7 7.9905 -3.6331 -3.1117 13 6 9.0085 -4.3348 -2.3113 14 6 9.1462 -5.3312 -3.4786 15 1 10.1630 -5.6687 -3.6796 16 6 8.1137 -6.4566 -3.3768 17 6 7.6163 -6.8224 -4.7658 18 7 7.0372 -5.6210 -5.3731 19 6 5.7434 -5.6427 -5.8214 20 1 5.0356 -6.3378 -5.3943 21 6 5.3417 -4.7715 -6.8246 22 7 6.2423 -4.1320 -7.5404 23 14 3.5230 -4.5066 -7.1587 24 1 3.0253 -3.3826 -6.3258 25 1 3.3255 -4.1840 -8.5947 26 1 2.7726 -5.7429 -6.8214 27 6 7.8271 -4.4038 -5.5043 28 6 8.6932 -4.1307 -4.2966 29 1 9.5326 -3.4877 -4.5613 30 7 2.2665 -1.0638 -0.0005 31 1 -0.3634 -0.0008 1.0276 32 1 -0.3634 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.0099 1.8951 -1.0151 35 1 4.4544 2.5864 0.5283 36 1 5.5586 1.1903 0.5245 37 1 4.6010 -2.3808 0.5121 38 1 5.6077 -0.9129 0.5123 39 1 5.4289 -0.7899 -1.9579 40 1 4.4223 -2.2578 -1.9581 41 1 6.2825 -3.5349 -0.9308 42 1 7.2898 -2.0673 -0.9304 43 1 9.9072 -3.7438 -2.1353 44 1 8.6123 -4.7837 -1.4004 45 1 8.5736 -7.3324 -2.9189 46 1 7.2730 -6.1254 -2.7673 47 1 6.8567 -7.6008 -4.6944 48 1 8.4497 -7.1759 -5.3728 49 1 5.9617 -3.5235 -8.2417 50 1 7.1516 -3.5609 -5.6497 51 1 8.4670 -4.4935 -6.3821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221938028.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:09 Heat of formation + Delta-G solvation = 113.336226 kcal Electronic energy + Delta-G solvation = -31450.763072 eV Core-core repulsion = 27389.123670 eV Total energy + Delta-G solvation = -4061.639401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.21201 -40.56727 -38.03792 -35.75105 -35.22731 -33.21553 -32.32086 -32.16070 -30.15656 -29.88641 -29.22774 -28.15052 -26.97757 -25.97169 -23.84025 -23.20720 -22.07228 -21.07119 -20.80198 -20.55330 -19.65729 -17.80289 -17.24264 -16.64383 -16.09007 -16.06227 -15.69180 -15.42955 -15.19572 -14.58595 -14.26425 -14.00198 -13.67939 -13.67158 -13.42536 -13.40331 -13.31010 -13.07605 -12.92746 -12.73792 -12.51066 -12.44641 -12.18666 -12.12528 -11.97249 -11.76821 -11.62961 -11.46062 -11.08949 -10.92684 -10.65930 -10.64941 -10.47666 -10.17293 -10.05287 -9.86911 -9.78032 -9.77000 -9.58164 -9.40166 -8.95253 -8.28838 -8.12831 -6.58722 -5.64534 -3.06641 1.50540 2.15772 2.79247 3.17976 3.26497 3.49331 3.55008 3.58837 3.87763 4.22918 4.46729 4.54434 4.61037 4.66423 4.68975 4.84906 5.00247 5.05705 5.11369 5.13651 5.19583 5.24144 5.40356 5.40887 5.42931 5.47691 5.48836 5.54512 5.61178 5.64219 5.68103 5.70830 5.87670 5.91121 6.09351 6.11788 6.21032 6.25130 6.33269 6.37165 6.40660 6.51868 6.58463 6.72486 6.78181 6.99086 7.49641 7.78310 7.95194 8.04498 8.33293 8.58666 8.75191 9.36985 10.01173 10.48212 11.43525 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010099 B = 0.003220 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.757395 B = 8692.707513 C =10451.572360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.217 3.783 3 N -0.546 5.546 4 C 0.277 3.723 5 C -0.077 4.077 6 N -0.373 5.373 7 C 0.129 3.871 8 C -0.120 4.120 9 C -0.127 4.127 10 C 0.537 3.463 11 O -0.514 6.514 12 N -0.634 5.634 13 C 0.096 3.904 14 C -0.114 4.114 15 H 0.091 0.909 16 C -0.113 4.113 17 C 0.147 3.853 18 N -0.585 5.585 19 C -0.253 4.253 20 H 0.062 0.938 21 C 0.013 3.987 22 N -0.904 5.904 23 Si 0.899 3.101 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.166 3.834 28 C 0.118 3.882 29 H 0.071 0.929 30 N -0.315 5.315 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.018 0.982 49 H 0.252 0.748 50 H 0.103 0.897 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 6.121 19.578 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 N -0.275 5.275 4 C 0.001 3.999 5 C -0.136 4.136 6 N -0.164 5.164 7 C 0.007 3.993 8 C -0.159 4.159 9 C -0.168 4.168 10 C 0.326 3.674 11 O -0.388 6.388 12 N -0.371 5.371 13 C -0.028 4.028 14 C -0.133 4.133 15 H 0.109 0.891 16 C -0.152 4.152 17 C 0.020 3.980 18 N -0.307 5.307 19 C -0.383 4.383 20 H 0.080 0.920 21 C -0.185 4.185 22 N -0.548 5.548 23 Si 0.729 3.271 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.040 3.960 28 C 0.014 3.986 29 H 0.088 0.912 30 N -0.144 5.144 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.036 0.964 49 H 0.062 0.938 50 H 0.121 0.879 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.416 6.178 18.965 20.236 hybrid contribution -0.457 0.212 -0.141 0.523 sum 2.959 6.390 18.824 20.098 Atomic orbital electron populations 1.20069 0.84020 1.04089 1.03449 1.24260 0.98238 0.85771 0.98223 1.70330 0.99842 1.31009 1.26332 1.24329 0.95305 0.83950 0.96332 1.20398 0.91215 0.97295 1.04721 1.50311 1.05958 1.05480 1.54608 1.21871 0.82406 0.95957 0.99097 1.21695 0.98175 1.01581 0.94432 1.21446 0.98091 1.01499 0.95734 1.19772 0.79411 0.77555 0.90710 1.90817 1.51780 1.50079 1.46122 1.49473 1.25275 1.51167 1.11187 1.23294 0.90827 0.92509 0.96136 1.22701 0.99587 0.94999 0.96001 0.89086 1.21617 0.97190 0.95776 1.00657 1.20530 0.96204 0.90333 0.90894 1.43467 1.11510 1.05620 1.70150 1.19091 0.85617 1.19806 1.13762 0.92034 1.24893 0.97268 1.00499 0.95878 1.70004 1.31520 1.31348 1.21973 0.86350 0.85636 0.78175 0.76928 1.21367 1.21828 1.20661 1.20200 0.94144 0.91948 0.89707 1.22577 0.93948 0.91625 0.90452 0.91151 1.78055 0.86726 1.22585 1.27037 0.90053 0.89672 0.89988 0.88852 0.88570 0.90006 0.88284 0.88473 0.90482 0.89711 0.89063 0.89363 0.90588 0.91165 0.92762 0.92154 0.92602 0.96368 0.93842 0.87870 0.95381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 36.00 0.38 -0.20 16 2 C 0.22 3.13 8.14 -156.85 -1.28 1.86 16 3 N -0.55 -7.95 11.19 -8.16 -0.09 -8.04 16 4 C 0.28 3.47 7.98 -155.69 -1.24 2.23 16 5 C -0.08 -0.59 10.21 36.01 0.37 -0.22 16 6 N -0.37 -4.94 3.64 -58.34 -0.21 -5.15 16 7 C 0.13 1.28 6.30 -4.05 -0.03 1.25 16 8 C -0.12 -1.56 4.83 -26.73 -0.13 -1.69 16 9 C -0.13 -1.53 5.55 -27.88 -0.15 -1.69 16 10 C 0.54 9.87 8.01 -10.99 -0.09 9.78 16 11 O -0.51 -12.45 15.23 5.55 0.08 -12.36 16 12 N -0.63 -10.76 3.34 -187.87 -0.63 -11.39 16 13 C 0.10 1.15 7.78 -11.54 -0.09 1.06 16 14 C -0.11 -1.65 4.58 -90.44 -0.41 -2.06 16 15 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 16 C -0.11 -1.82 5.61 -27.20 -0.15 -1.97 16 17 C 0.15 3.02 6.44 -4.53 -0.03 2.99 16 18 N -0.58 -14.95 3.02 -175.59 -0.53 -15.48 16 19 C -0.25 -7.32 9.53 -15.06 -0.14 -7.46 16 20 H 0.06 1.77 7.83 -52.48 -0.41 1.35 16 21 C 0.01 0.39 4.94 -17.43 -0.09 0.31 16 22 N -0.90 -27.73 10.94 55.49 0.61 -27.12 16 23 Si 0.90 23.86 29.58 -169.99 -5.03 18.83 16 24 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 25 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.17 4.12 4.59 -5.43 -0.02 4.09 16 28 C 0.12 2.19 4.03 -77.82 -0.31 1.87 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 N -0.32 -4.92 12.70 32.42 0.41 -4.51 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.42 7.12 -51.93 -0.37 0.05 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.10 0.61 7.10 -51.93 -0.37 0.24 16 39 H 0.08 1.07 8.10 -51.92 -0.42 0.65 16 40 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.71 8.05 -51.93 -0.42 0.30 16 45 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.06 1.06 7.68 -51.93 -0.40 0.66 16 47 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.10 3.03 4.96 -51.93 -0.26 2.77 16 51 H 0.03 0.75 7.99 -51.93 -0.42 0.34 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -39.17 408.93 -11.17 -50.34 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.52 Total: -1.42 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -3.42 Total: 10.14 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -0.44 Total: -71.69 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.03 Total: 18.83 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -39.17 -11.17 -50.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221938028.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.678 kcal (2) G-P(sol) polarization free energy of solvation -39.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds