Wall clock time and date at job start Wed Apr 1 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33243 * 125.52732 * 2 1 4 4 C 1.30832 * 109.82983 * 179.79453 * 3 2 1 5 5 C 1.50705 * 125.96198 * 180.23403 * 4 3 2 6 6 N 1.34432 * 108.07710 * 0.39079 * 4 3 2 7 7 C 1.46498 * 126.82239 * 179.88731 * 6 4 3 8 8 C 1.52995 * 109.47256 * 269.70703 * 7 6 4 9 9 C 1.53003 * 109.47339 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47577 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99765 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00127 * 180.27851 * 10 9 8 13 13 C 1.47286 * 136.54407 * 359.71540 * 12 10 9 14 14 C 1.54084 * 87.60218 * 151.35466 * 13 12 10 15 15 H 1.09004 * 115.04120 * 141.63133 * 14 13 12 16 16 C 1.53069 * 111.39323 * 273.97502 * 14 13 12 17 17 C 1.52000 * 109.68744 * 142.52240 * 16 14 13 18 18 N 1.46540 * 108.10462 * 301.56304 * 17 16 14 19 19 C 1.36944 * 119.73881 * 236.29816 * 18 17 16 20 20 H 1.08008 * 119.99411 * 25.20034 * 19 18 17 21 21 C 1.38805 * 120.00279 * 205.20049 * 19 18 17 22 22 N 1.31619 * 120.00007 * 14.49200 * 21 19 18 23 23 Si 1.86802 * 120.00179 * 194.49142 * 21 19 18 24 24 H 1.48494 * 109.47139 * 90.00151 * 23 21 19 25 25 H 1.48497 * 109.47116 * 210.00370 * 23 21 19 26 26 H 1.48505 * 109.47017 * 329.99955 * 23 21 19 27 27 C 1.45703 * 120.52821 * 56.32015 * 18 17 16 28 28 C 1.46464 * 136.53955 * 179.35236 * 12 10 9 29 29 H 1.08997 * 111.44200 * 96.39747 * 28 12 10 30 30 N 1.30721 * 125.52843 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47322 * 269.95475 * 1 2 3 32 32 H 1.09001 * 109.47334 * 29.95771 * 1 2 3 33 33 H 1.08999 * 109.47026 * 149.95435 * 1 2 3 34 34 H 1.08997 * 109.47472 * 270.17900 * 5 4 3 35 35 H 1.09002 * 109.46488 * 30.18598 * 5 4 3 36 36 H 1.09001 * 109.46471 * 150.17804 * 5 4 3 37 37 H 1.09001 * 109.46956 * 149.70501 * 7 6 4 38 38 H 1.09002 * 109.46916 * 29.70973 * 7 6 4 39 39 H 1.09009 * 109.47232 * 60.00327 * 8 7 6 40 40 H 1.08994 * 109.47607 * 300.00221 * 8 7 6 41 41 H 1.09001 * 109.46960 * 59.99744 * 9 8 7 42 42 H 1.09002 * 109.46828 * 300.00267 * 9 8 7 43 43 H 1.08993 * 113.53365 * 266.03968 * 13 12 10 44 44 H 1.09003 * 113.52661 * 36.67163 * 13 12 10 45 45 H 1.09008 * 109.51330 * 262.32752 * 16 14 13 46 46 H 1.08996 * 109.51324 * 22.48159 * 16 14 13 47 47 H 1.08998 * 109.87858 * 181.86488 * 17 16 14 48 48 H 1.08996 * 109.68177 * 61.14815 * 17 16 14 49 49 H 0.97003 * 120.00364 * 179.97438 * 22 21 19 50 50 H 1.08992 * 108.78950 * 199.09282 * 27 18 17 51 51 H 1.09001 * 108.78232 * 80.88292 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7304 0.0044 5 6 4.7227 1.6653 0.0109 6 7 3.5965 -0.6127 -0.0013 7 6 4.8047 -1.4413 -0.0016 8 6 5.2252 -1.7295 -1.4441 9 6 6.4866 -2.5953 -1.4444 10 6 6.9012 -2.8787 -2.8653 11 8 6.2514 -2.4325 -3.7870 12 7 7.9905 -3.6331 -3.1117 13 6 9.0085 -4.3348 -2.3113 14 6 9.1462 -5.3312 -3.4786 15 1 10.1630 -5.6687 -3.6796 16 6 8.1137 -6.4566 -3.3768 17 6 7.6163 -6.8224 -4.7658 18 7 7.0372 -5.6210 -5.3731 19 6 5.7434 -5.6427 -5.8214 20 1 5.0356 -6.3378 -5.3943 21 6 5.3417 -4.7715 -6.8246 22 7 6.2423 -4.1320 -7.5404 23 14 3.5230 -4.5066 -7.1587 24 1 3.0253 -3.3826 -6.3258 25 1 3.3255 -4.1840 -8.5947 26 1 2.7726 -5.7429 -6.8214 27 6 7.8271 -4.4038 -5.5043 28 6 8.6932 -4.1307 -4.2966 29 1 9.5326 -3.4877 -4.5613 30 7 2.2665 -1.0638 -0.0005 31 1 -0.3634 -0.0008 1.0276 32 1 -0.3634 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.0099 1.8951 -1.0151 35 1 4.4544 2.5864 0.5283 36 1 5.5586 1.1903 0.5245 37 1 4.6010 -2.3808 0.5121 38 1 5.6077 -0.9129 0.5123 39 1 5.4289 -0.7899 -1.9579 40 1 4.4223 -2.2578 -1.9581 41 1 6.2825 -3.5349 -0.9308 42 1 7.2898 -2.0673 -0.9304 43 1 9.9072 -3.7438 -2.1353 44 1 8.6123 -4.7837 -1.4004 45 1 8.5736 -7.3324 -2.9189 46 1 7.2730 -6.1254 -2.7673 47 1 6.8567 -7.6008 -4.6944 48 1 8.4497 -7.1759 -5.3728 49 1 5.9617 -3.5235 -8.2417 50 1 7.1516 -3.5609 -5.6497 51 1 8.4670 -4.4935 -6.3821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221938028.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:07 Heat of formation + Delta-G solvation = 85.996334 kcal Electronic energy + Delta-G solvation = -31451.948618 eV Core-core repulsion = 27389.123670 eV Total energy + Delta-G solvation = -4062.824948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.16861 -41.89145 -39.43757 -37.08743 -36.73974 -34.15267 -34.03037 -33.29251 -31.92998 -31.03646 -30.29014 -29.17118 -28.58377 -26.95557 -25.66275 -24.55887 -23.23693 -22.59781 -21.76869 -21.44594 -20.99513 -19.49295 -18.60099 -17.84281 -17.42964 -17.36835 -16.93169 -16.80200 -16.45800 -16.11314 -15.62699 -15.40129 -15.06751 -14.86892 -14.65531 -14.54386 -14.41645 -14.25845 -13.99561 -13.88676 -13.70508 -13.52312 -13.36865 -13.19566 -13.11929 -12.98226 -12.80995 -12.76718 -12.73117 -12.55584 -12.33231 -12.21786 -11.98898 -11.90337 -11.73183 -11.47777 -11.09074 -11.06505 -10.78956 -10.70026 -10.38868 -10.28929 -9.46565 -8.70423 -7.89727 -5.32706 0.54272 1.27643 1.31210 1.36423 1.38390 1.80510 1.85997 2.06352 2.42432 3.09170 3.26519 3.41613 3.46102 3.49543 3.69535 3.71242 3.84503 3.92320 3.97081 4.09585 4.23670 4.32291 4.34700 4.49107 4.50144 4.54695 4.59043 4.62890 4.66396 4.66796 4.72822 4.77305 4.80806 4.85219 4.89542 4.95360 4.97833 4.99346 5.07255 5.13947 5.16745 5.31745 5.34750 5.43275 5.46124 5.53046 5.71640 5.82008 5.88544 6.36087 7.05781 7.06209 7.16120 7.41834 7.94190 8.31036 9.14005 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010099 B = 0.003220 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.757395 B = 8692.707513 C =10451.572360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.203 3.797 3 N -0.577 5.577 4 C 0.274 3.726 5 C -0.076 4.076 6 N -0.382 5.382 7 C 0.132 3.868 8 C -0.110 4.110 9 C -0.108 4.108 10 C 0.519 3.481 11 O -0.594 6.594 12 N -0.641 5.641 13 C 0.115 3.885 14 C -0.106 4.106 15 H 0.128 0.872 16 C -0.102 4.102 17 C 0.137 3.863 18 N -0.602 5.602 19 C -0.254 4.254 20 H 0.059 0.941 21 C -0.041 4.041 22 N -0.931 5.931 23 Si 0.948 3.052 24 H -0.308 1.308 25 H -0.287 1.287 26 H -0.262 1.262 27 C 0.179 3.821 28 C 0.102 3.898 29 H 0.087 0.913 30 N -0.359 5.359 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.149 0.851 39 H 0.060 0.940 40 H 0.027 0.973 41 H 0.114 0.886 42 H 0.142 0.858 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.044 0.956 47 H 0.049 0.951 48 H 0.024 0.976 49 H 0.243 0.757 50 H 0.049 0.951 51 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 5.431 23.928 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 N -0.307 5.307 4 C -0.001 4.001 5 C -0.135 4.135 6 N -0.172 5.172 7 C 0.011 3.989 8 C -0.149 4.149 9 C -0.148 4.148 10 C 0.310 3.690 11 O -0.474 6.474 12 N -0.376 5.376 13 C -0.006 4.006 14 C -0.124 4.124 15 H 0.146 0.854 16 C -0.141 4.141 17 C 0.012 3.988 18 N -0.325 5.325 19 C -0.385 4.385 20 H 0.076 0.924 21 C -0.237 4.237 22 N -0.578 5.578 23 Si 0.778 3.222 24 H -0.237 1.237 25 H -0.213 1.213 26 H -0.186 1.186 27 C 0.052 3.948 28 C -0.003 4.003 29 H 0.105 0.895 30 N -0.189 5.189 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.167 0.833 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.132 0.868 42 H 0.160 0.840 43 H 0.135 0.865 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.042 0.958 49 H 0.052 0.948 50 H 0.067 0.933 51 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 6.348 5.413 23.372 24.817 hybrid contribution -1.293 0.368 -1.562 2.061 sum 5.055 5.781 21.810 23.122 Atomic orbital electron populations 1.20206 0.81987 1.04457 1.04839 1.24966 0.99774 0.85647 0.97507 1.70349 1.01037 1.31549 1.27766 1.25260 0.96078 0.84369 0.94435 1.20660 0.90334 0.97082 1.05425 1.50509 1.05874 1.06158 1.54663 1.22104 0.82653 0.97132 0.96984 1.21529 0.97118 1.00265 0.96016 1.21433 0.98723 1.02918 0.91734 1.21003 0.78914 0.76511 0.92542 1.90795 1.54348 1.53270 1.48994 1.49684 1.25697 1.50471 1.11736 1.23511 0.90609 0.90904 0.95570 1.22750 1.00533 0.93311 0.95849 0.85383 1.21490 0.97443 0.98260 0.96911 1.20802 0.96083 0.88340 0.93560 1.43717 1.10727 1.07750 1.70340 1.19383 0.87514 1.18815 1.12746 0.92357 1.25519 1.00271 1.01260 0.96621 1.70164 1.32688 1.32263 1.22678 0.85546 0.82380 0.77814 0.76458 1.23709 1.21309 1.18632 1.19815 0.93043 0.89941 0.91979 1.22572 0.93351 0.95174 0.89183 0.89504 1.77951 0.88282 1.23932 1.28695 0.88068 0.88910 0.89915 0.88723 0.87378 0.86547 0.87297 0.83304 0.92150 0.95418 0.86778 0.84040 0.86492 0.87853 0.88206 0.93675 0.93267 0.95753 0.94774 0.93285 0.99270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.51 71.23 0.75 -0.41 16 2 C 0.20 5.99 8.14 138.63 1.13 7.12 16 3 N -0.58 -16.87 11.19 -179.72 -2.01 -18.88 16 4 C 0.27 6.62 7.98 138.23 1.10 7.72 16 5 C -0.08 -0.97 10.21 71.24 0.73 -0.24 16 6 N -0.38 -9.83 3.64 -338.49 -1.23 -11.06 16 7 C 0.13 2.29 6.30 86.38 0.54 2.83 16 8 C -0.11 -2.82 4.83 30.59 0.15 -2.67 16 9 C -0.11 -2.28 5.55 29.85 0.17 -2.11 16 10 C 0.52 18.83 8.01 87.66 0.70 19.53 16 11 O -0.59 -30.68 15.23 -3.04 -0.05 -30.73 16 12 N -0.64 -20.22 3.34 -866.69 -2.89 -23.11 16 13 C 0.11 2.02 7.78 81.10 0.63 2.66 16 14 C -0.11 -2.56 4.58 -10.68 -0.05 -2.61 16 15 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 16 C -0.10 -2.90 5.61 30.29 0.17 -2.73 16 17 C 0.14 5.50 6.44 86.04 0.55 6.05 16 18 N -0.60 -31.71 3.02 -709.45 -2.14 -33.85 16 19 C -0.25 -15.32 9.53 84.03 0.80 -14.52 16 20 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 21 C -0.04 -2.59 4.94 84.86 0.42 -2.17 16 22 N -0.93 -60.96 10.94 21.65 0.24 -60.72 16 23 Si 0.95 51.75 29.58 68.60 2.03 53.78 16 24 H -0.31 -17.80 7.11 99.48 0.71 -17.10 16 25 H -0.29 -15.27 7.11 99.48 0.71 -14.57 16 26 H -0.26 -13.30 7.11 99.48 0.71 -12.59 16 27 C 0.18 9.27 4.59 85.91 0.39 9.66 16 28 C 0.10 3.66 4.03 38.61 0.16 3.82 16 29 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 30 N -0.36 -11.47 12.70 -51.34 -0.65 -12.12 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.12 0.64 7.12 -2.39 -0.02 0.63 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.15 1.04 7.10 -2.39 -0.02 1.02 16 39 H 0.06 1.72 8.10 -2.38 -0.02 1.70 16 40 H 0.03 1.00 8.10 -2.39 -0.02 0.98 16 41 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.27 8.05 -2.39 -0.02 1.25 16 45 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 46 H 0.04 1.43 7.68 -2.39 -0.02 1.41 16 47 H 0.05 1.99 7.87 -2.39 -0.02 1.97 16 48 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 49 H 0.24 15.65 8.31 -92.71 -0.77 14.88 16 50 H 0.05 3.09 4.96 -2.39 -0.01 3.07 16 51 H -0.01 -0.60 7.99 -2.39 -0.02 -0.62 16 Total: -1.00 -100.21 408.93 2.55 -97.66 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 0.91 Total: 7.10 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: 8.34 Total: 31.93 kcal Atomic # 7 Polarization: -151.05 SS G_CDS: -8.69 Total: -159.74 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.05 Total: -30.73 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.03 Total: 53.78 kcal Total: -100.21 2.55 -97.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221938028.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.655 kcal (2) G-P(sol) polarization free energy of solvation -100.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds