Wall clock time and date at job start Wed Apr 1 2020 04:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.97212 * 2 1 4 4 C 1.53871 * 113.68648 * 131.48950 * 2 1 3 5 5 H 1.08997 * 113.64158 * 333.73195 * 4 2 1 6 6 N 1.46502 * 113.63935 * 202.84162 * 4 2 1 7 7 C 1.34777 * 120.00212 * 154.99837 * 6 4 2 8 8 O 1.21283 * 120.00100 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99753 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.46831 * 180.02562 * 9 7 6 11 11 N 1.46502 * 109.47291 * 179.97438 * 10 9 7 12 12 C 1.35316 * 125.86729 * 124.99496 * 11 10 9 13 13 C 1.35353 * 106.17510 * 179.97438 * 12 11 10 14 14 N 1.33776 * 106.49489 * 0.02562 * 13 12 11 15 15 N 1.28631 * 108.88785 * 0.02562 * 14 13 12 16 16 C 1.54157 * 86.93984 * 88.33152 * 4 2 1 17 17 H 1.08995 * 114.25015 * 141.19499 * 16 4 2 18 18 C 1.53064 * 111.68544 * 271.97586 * 16 4 2 19 19 C 1.53024 * 109.40452 * 146.40006 * 18 16 4 20 20 C 1.52937 * 108.93439 * 295.34848 * 19 18 16 21 21 N 1.44115 * 109.36393 * 57.23848 * 20 19 18 22 22 C 1.36941 * 117.16305 * 141.11156 * 21 20 19 23 23 H 1.07991 * 120.00117 * 207.66516 * 22 21 20 24 24 C 1.38814 * 119.99501 * 27.66992 * 22 21 20 25 25 N 1.31612 * 120.00379 * 16.96216 * 24 22 21 26 26 Si 1.86805 * 119.99602 * 196.96301 * 24 22 21 27 27 H 1.48504 * 109.46667 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46915 * 119.99978 * 26 24 22 29 29 H 1.48498 * 109.47222 * 240.00399 * 26 24 22 30 30 C 1.45089 * 124.34708 * 320.22617 * 21 20 19 31 31 H 1.08998 * 112.25734 * 156.67200 * 30 21 20 32 32 H 1.09000 * 109.46764 * 276.06796 * 1 2 3 33 33 H 1.08996 * 109.47242 * 36.06814 * 1 2 3 34 34 H 1.09004 * 109.47367 * 156.07167 * 1 2 3 35 35 H 1.09003 * 109.47365 * 171.97988 * 3 2 1 36 36 H 1.08998 * 109.47223 * 291.98714 * 3 2 1 37 37 H 1.08999 * 109.46971 * 51.98202 * 3 2 1 38 38 H 0.97007 * 119.99778 * 335.00111 * 6 4 2 39 39 H 1.09000 * 109.47312 * 60.00207 * 9 7 6 40 40 H 1.08997 * 109.47536 * 299.99898 * 9 7 6 41 41 H 1.08995 * 109.47463 * 59.99857 * 10 9 7 42 42 H 1.08998 * 109.47336 * 299.99553 * 10 9 7 43 43 H 1.07998 * 126.91188 * 0.25196 * 12 11 10 44 44 H 1.07998 * 126.75210 * 179.97438 * 13 12 11 45 45 H 1.08994 * 109.48122 * 266.38182 * 18 16 4 46 46 H 1.08997 * 109.48235 * 26.42429 * 18 16 4 47 47 H 1.08994 * 109.56149 * 55.19075 * 19 18 16 48 48 H 1.09000 * 109.55984 * 175.40509 * 19 18 16 49 49 H 1.09001 * 109.40242 * 177.47633 * 20 19 18 50 50 H 1.09001 * 109.40392 * 297.30952 * 20 19 18 51 51 H 0.97001 * 120.00309 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1271 1.4087 0.0000 4 6 2.1481 -0.9335 1.0555 5 1 1.5038 -1.1059 1.9175 6 7 3.5168 -0.5705 1.4314 7 6 4.0024 -0.9291 2.6364 8 8 3.3064 -1.5529 3.4095 9 6 5.4100 -0.5551 3.0232 10 6 5.7088 -1.0791 4.4293 11 7 7.0774 -0.7161 4.8052 12 6 7.4399 -0.0328 5.9155 13 6 8.7878 0.0799 5.8656 14 7 9.1787 -0.5313 4.7417 15 7 8.1417 -0.9915 4.1356 16 6 2.0740 -2.0481 -0.0068 17 1 2.9322 -2.7201 -0.0112 18 6 0.7261 -2.7725 0.0265 19 6 0.3433 -3.1998 -1.3921 20 6 0.1263 -1.9493 -2.2454 21 7 1.3218 -1.1447 -2.2269 22 6 1.6823 -0.5337 -3.3982 23 1 2.7207 -0.3106 -3.5935 24 6 0.7129 -0.2010 -4.3344 25 7 -0.5544 -0.1566 -3.9822 26 14 1.2073 0.1838 -6.0943 27 1 2.6811 0.0641 -6.2318 28 1 0.5452 -0.7748 -7.0152 29 1 0.7886 1.5672 -6.4349 30 6 2.1462 -0.9305 -1.0524 31 1 3.1695 -0.6580 -1.3104 32 1 -0.3633 0.1086 1.0219 33 1 -0.3633 0.8306 -0.6050 34 1 -0.3634 -0.9394 -0.4168 35 1 3.2059 1.3461 0.1434 36 1 1.9147 1.8933 -0.9529 37 1 1.6862 1.9902 0.8096 38 1 4.0735 -0.0719 0.8130 39 1 5.5145 0.5298 3.0095 40 1 6.1110 -0.9966 2.3149 41 1 5.6044 -2.1639 4.4427 42 1 5.0079 -0.6379 5.1380 43 1 6.7858 0.3426 6.6885 44 1 9.4227 0.5681 6.5901 45 1 0.8027 -3.6537 0.6634 46 1 -0.0369 -2.1025 0.4227 47 1 1.1454 -3.7999 -1.8215 48 1 -0.5749 -3.7864 -1.3613 49 1 -0.1030 -2.2449 -3.2693 50 1 -0.7059 -1.3739 -1.8397 51 1 -1.2318 0.0763 -4.6363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264030714.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:49 Heat of formation + Delta-G solvation = 123.952793 kcal Electronic energy + Delta-G solvation = -31655.436197 eV Core-core repulsion = 27594.257165 eV Total energy + Delta-G solvation = -4061.179032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.52184 -41.04607 -39.31139 -35.75156 -35.34977 -33.39428 -32.69096 -31.44500 -31.21033 -30.40243 -29.86245 -26.92136 -26.17259 -25.32630 -24.26546 -22.97186 -22.53183 -21.84045 -21.12865 -20.42798 -19.37958 -18.22488 -17.66805 -16.96393 -16.76794 -16.56139 -16.05153 -15.69274 -15.21279 -14.82824 -14.68007 -14.49495 -14.05871 -13.88958 -13.69555 -13.50667 -13.14264 -13.00677 -12.72609 -12.52972 -12.23857 -12.16684 -12.12377 -11.78042 -11.68075 -11.40734 -11.21220 -11.19015 -11.05404 -10.91434 -10.80189 -10.57842 -10.49142 -10.22394 -10.08256 -10.03689 -9.75772 -9.68861 -9.59625 -9.42969 -9.08956 -8.70757 -8.37156 -6.66788 -5.81484 -3.28194 1.29138 1.94706 2.30410 2.45436 3.12652 3.32714 3.41970 3.43222 3.99170 4.19754 4.28578 4.45553 4.54649 4.72122 4.84821 4.91117 4.91125 4.99782 5.09086 5.24123 5.25252 5.32896 5.45438 5.47100 5.58024 5.67182 5.78462 5.85228 5.89541 5.95054 6.06399 6.13287 6.19470 6.23115 6.25828 6.38950 6.41489 6.49863 6.53987 6.58448 6.71843 6.75096 6.78701 6.91612 7.07376 7.16488 7.39918 7.47712 7.72956 7.81362 8.09813 8.22123 8.43960 9.23270 9.89204 10.28609 11.22375 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.002383 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.443780 B =11749.397768 C =12466.575419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.125 4.125 4 C 0.122 3.878 5 H 0.096 0.904 6 N -0.700 5.700 7 C 0.521 3.479 8 O -0.546 6.546 9 C -0.157 4.157 10 C 0.132 3.868 11 N -0.290 5.290 12 C -0.048 4.048 13 C -0.055 4.055 14 N -0.273 5.273 15 N -0.084 5.084 16 C -0.128 4.128 17 H 0.069 0.931 18 C -0.106 4.106 19 C -0.145 4.145 20 C 0.181 3.819 21 N -0.568 5.568 22 C -0.267 4.267 23 H 0.063 0.937 24 C 0.010 3.990 25 N -0.898 5.898 26 Si 0.898 3.102 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.291 1.291 30 C 0.189 3.811 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.403 0.597 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.191 0.809 44 H 0.189 0.811 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.039 0.961 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.528 0.816 17.691 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C -0.182 4.182 4 C 0.016 3.984 5 H 0.114 0.886 6 N -0.349 5.349 7 C 0.306 3.694 8 O -0.424 6.424 9 C -0.198 4.198 10 C 0.011 3.989 11 N -0.084 5.084 12 C -0.199 4.199 13 C -0.212 4.212 14 N -0.139 5.139 15 N -0.064 5.064 16 C -0.149 4.149 17 H 0.087 0.913 18 C -0.143 4.143 19 C -0.184 4.184 20 C 0.056 3.944 21 N -0.285 5.285 22 C -0.397 4.397 23 H 0.081 0.919 24 C -0.190 4.190 25 N -0.542 5.542 26 Si 0.728 3.272 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.218 1.218 30 C 0.079 3.921 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.239 0.761 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.208 0.792 44 H 0.206 0.794 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.057 0.943 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.421 -0.301 16.842 18.833 hybrid contribution -0.052 1.169 -0.216 1.190 sum 8.368 0.868 16.627 18.634 Atomic orbital electron populations 1.22006 0.92536 1.05271 0.99253 1.22995 0.96995 0.94649 0.96984 1.21572 0.98521 0.96423 1.01725 1.22405 0.81826 0.97268 0.96873 0.88585 1.45767 1.15623 1.56737 1.16813 1.20086 0.87952 0.79347 0.82004 1.90723 1.60108 1.40491 1.51098 1.21887 0.96349 1.04158 0.97376 1.21858 0.75855 1.03738 0.97445 1.47601 1.09175 1.35989 1.15651 1.23753 0.97984 1.03570 0.94629 1.23653 0.93314 1.05291 0.98958 1.75142 1.20521 1.11734 1.06518 1.78324 0.88088 1.20110 1.19893 1.23218 0.98160 0.96518 0.97053 0.91273 1.21525 0.96008 0.99090 0.97718 1.22100 0.99940 1.00478 0.95916 1.20339 0.88393 0.87474 0.98200 1.42876 1.27202 1.52974 1.05444 1.19265 0.92030 1.34357 0.94013 0.91898 1.25011 0.95584 0.99254 0.99123 1.70078 0.99716 1.51434 1.32925 0.86306 0.78012 0.77503 0.85405 1.20334 1.21593 1.21814 1.21284 0.94251 0.91224 0.85373 0.91162 0.94912 0.92011 0.88602 0.94105 0.91633 0.93964 0.76109 0.87972 0.86901 0.87154 0.86608 0.79207 0.79364 0.93512 0.90412 0.92902 0.92965 0.91572 0.94332 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.38 37.16 0.27 -2.13 16 2 C -0.11 -1.86 1.34 -153.85 -0.21 -2.06 16 3 C -0.12 -1.91 8.90 37.16 0.33 -1.57 16 4 C 0.12 1.80 3.34 -66.88 -0.22 1.58 16 5 H 0.10 1.54 7.35 -51.93 -0.38 1.16 16 6 N -0.70 -8.41 4.71 -52.79 -0.25 -8.66 16 7 C 0.52 5.93 7.83 -10.99 -0.09 5.84 16 8 O -0.55 -7.94 15.58 5.55 0.09 -7.85 16 9 C -0.16 -1.25 5.83 -27.88 -0.16 -1.41 16 10 C 0.13 0.99 5.74 -4.04 -0.02 0.96 16 11 N -0.29 -2.58 3.44 -61.26 -0.21 -2.79 16 12 C -0.05 -0.33 11.57 -17.04 -0.20 -0.53 16 13 C -0.05 -0.45 12.05 -17.73 -0.21 -0.67 16 14 N -0.27 -3.32 12.41 30.24 0.38 -2.95 16 15 N -0.08 -1.01 12.91 60.35 0.78 -0.23 16 16 C -0.13 -2.11 4.12 -89.87 -0.37 -2.48 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.11 -1.75 5.18 -26.69 -0.14 -1.88 16 19 C -0.15 -2.65 6.03 -26.75 -0.16 -2.82 16 20 C 0.18 4.02 3.93 -5.34 -0.02 4.00 16 21 N -0.57 -12.82 2.61 -168.23 -0.44 -13.26 16 22 C -0.27 -6.79 9.40 -15.06 -0.14 -6.93 16 23 H 0.06 1.60 7.86 -52.49 -0.41 1.19 16 24 C 0.01 0.25 4.76 -17.43 -0.08 0.17 16 25 N -0.90 -24.33 11.08 55.49 0.61 -23.72 16 26 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 C 0.19 3.53 3.40 -68.38 -0.23 3.30 16 31 H 0.07 1.31 7.90 -51.93 -0.41 0.90 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 34 H 0.10 1.83 1.92 -51.93 -0.10 1.73 16 35 H 0.04 0.52 6.02 -51.93 -0.31 0.21 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.40 4.23 6.83 -40.82 -0.28 3.95 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 0.91 8.12 -51.93 -0.42 0.49 16 41 H 0.11 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.12 0.68 8.03 -51.93 -0.42 0.26 16 43 H 0.19 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.19 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.29 4.71 -51.93 -0.24 1.04 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.07 1.67 6.56 -51.93 -0.34 1.33 16 50 H 0.04 0.92 5.52 -51.93 -0.29 0.63 16 51 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -31.15 390.96 -7.64 -38.79 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.81 Total: 5.56 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.66 Total: -6.64 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.87 Total: -51.60 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.15 -7.64 -38.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030714.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.748 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds