Wall clock time and date at job start Wed Apr 1 2020 04:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.97212 * 2 1 4 4 C 1.53871 * 113.68648 * 131.48950 * 2 1 3 5 5 H 1.08997 * 113.64158 * 333.73195 * 4 2 1 6 6 N 1.46502 * 113.63935 * 202.84162 * 4 2 1 7 7 C 1.34777 * 120.00212 * 154.99837 * 6 4 2 8 8 O 1.21283 * 120.00100 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99753 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.46831 * 180.02562 * 9 7 6 11 11 N 1.46502 * 109.47291 * 179.97438 * 10 9 7 12 12 C 1.35316 * 125.86729 * 124.99496 * 11 10 9 13 13 C 1.35353 * 106.17510 * 179.97438 * 12 11 10 14 14 N 1.33776 * 106.49489 * 0.02562 * 13 12 11 15 15 N 1.28631 * 108.88785 * 0.02562 * 14 13 12 16 16 C 1.54157 * 86.93984 * 88.33152 * 4 2 1 17 17 H 1.08995 * 114.25015 * 141.19499 * 16 4 2 18 18 C 1.53064 * 111.68544 * 271.97586 * 16 4 2 19 19 C 1.53024 * 109.40452 * 146.40006 * 18 16 4 20 20 C 1.52937 * 108.93439 * 295.34848 * 19 18 16 21 21 N 1.44115 * 109.36393 * 57.23848 * 20 19 18 22 22 C 1.36941 * 117.16305 * 141.11156 * 21 20 19 23 23 H 1.07991 * 120.00117 * 207.66516 * 22 21 20 24 24 C 1.38814 * 119.99501 * 27.66992 * 22 21 20 25 25 N 1.31612 * 120.00379 * 16.96216 * 24 22 21 26 26 Si 1.86805 * 119.99602 * 196.96301 * 24 22 21 27 27 H 1.48504 * 109.46667 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46915 * 119.99978 * 26 24 22 29 29 H 1.48498 * 109.47222 * 240.00399 * 26 24 22 30 30 C 1.45089 * 124.34708 * 320.22617 * 21 20 19 31 31 H 1.08998 * 112.25734 * 156.67200 * 30 21 20 32 32 H 1.09000 * 109.46764 * 276.06796 * 1 2 3 33 33 H 1.08996 * 109.47242 * 36.06814 * 1 2 3 34 34 H 1.09004 * 109.47367 * 156.07167 * 1 2 3 35 35 H 1.09003 * 109.47365 * 171.97988 * 3 2 1 36 36 H 1.08998 * 109.47223 * 291.98714 * 3 2 1 37 37 H 1.08999 * 109.46971 * 51.98202 * 3 2 1 38 38 H 0.97007 * 119.99778 * 335.00111 * 6 4 2 39 39 H 1.09000 * 109.47312 * 60.00207 * 9 7 6 40 40 H 1.08997 * 109.47536 * 299.99898 * 9 7 6 41 41 H 1.08995 * 109.47463 * 59.99857 * 10 9 7 42 42 H 1.08998 * 109.47336 * 299.99553 * 10 9 7 43 43 H 1.07998 * 126.91188 * 0.25196 * 12 11 10 44 44 H 1.07998 * 126.75210 * 179.97438 * 13 12 11 45 45 H 1.08994 * 109.48122 * 266.38182 * 18 16 4 46 46 H 1.08997 * 109.48235 * 26.42429 * 18 16 4 47 47 H 1.08994 * 109.56149 * 55.19075 * 19 18 16 48 48 H 1.09000 * 109.55984 * 175.40509 * 19 18 16 49 49 H 1.09001 * 109.40242 * 177.47633 * 20 19 18 50 50 H 1.09001 * 109.40392 * 297.30952 * 20 19 18 51 51 H 0.97001 * 120.00309 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1271 1.4087 0.0000 4 6 2.1481 -0.9335 1.0555 5 1 1.5038 -1.1059 1.9175 6 7 3.5168 -0.5705 1.4314 7 6 4.0024 -0.9291 2.6364 8 8 3.3064 -1.5529 3.4095 9 6 5.4100 -0.5551 3.0232 10 6 5.7088 -1.0791 4.4293 11 7 7.0774 -0.7161 4.8052 12 6 7.4399 -0.0328 5.9155 13 6 8.7878 0.0799 5.8656 14 7 9.1787 -0.5313 4.7417 15 7 8.1417 -0.9915 4.1356 16 6 2.0740 -2.0481 -0.0068 17 1 2.9322 -2.7201 -0.0112 18 6 0.7261 -2.7725 0.0265 19 6 0.3433 -3.1998 -1.3921 20 6 0.1263 -1.9493 -2.2454 21 7 1.3218 -1.1447 -2.2269 22 6 1.6823 -0.5337 -3.3982 23 1 2.7207 -0.3106 -3.5935 24 6 0.7129 -0.2010 -4.3344 25 7 -0.5544 -0.1566 -3.9822 26 14 1.2073 0.1838 -6.0943 27 1 2.6811 0.0641 -6.2318 28 1 0.5452 -0.7748 -7.0152 29 1 0.7886 1.5672 -6.4349 30 6 2.1462 -0.9305 -1.0524 31 1 3.1695 -0.6580 -1.3104 32 1 -0.3633 0.1086 1.0219 33 1 -0.3633 0.8306 -0.6050 34 1 -0.3634 -0.9394 -0.4168 35 1 3.2059 1.3461 0.1434 36 1 1.9147 1.8933 -0.9529 37 1 1.6862 1.9902 0.8096 38 1 4.0735 -0.0719 0.8130 39 1 5.5145 0.5298 3.0095 40 1 6.1110 -0.9966 2.3149 41 1 5.6044 -2.1639 4.4427 42 1 5.0079 -0.6379 5.1380 43 1 6.7858 0.3426 6.6885 44 1 9.4227 0.5681 6.5901 45 1 0.8027 -3.6537 0.6634 46 1 -0.0369 -2.1025 0.4227 47 1 1.1454 -3.7999 -1.8215 48 1 -0.5749 -3.7864 -1.3613 49 1 -0.1030 -2.2449 -3.2693 50 1 -0.7059 -1.3739 -1.8397 51 1 -1.2318 0.0763 -4.6363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264030714.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:48 Heat of formation + Delta-G solvation = 104.467551 kcal Electronic energy + Delta-G solvation = -31656.281141 eV Core-core repulsion = 27594.257165 eV Total energy + Delta-G solvation = -4062.023976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -44.15862 -42.36932 -40.36348 -37.14160 -36.17990 -34.84537 -34.02210 -32.37782 -32.04117 -31.84387 -31.24180 -28.28521 -27.24437 -26.95293 -25.49660 -24.10446 -23.58380 -22.84641 -22.31434 -21.33320 -20.80571 -19.16723 -18.83170 -18.66893 -17.58984 -17.42117 -17.16611 -16.61201 -16.55993 -16.02520 -15.79729 -15.60772 -15.51483 -15.16219 -14.73792 -14.62413 -14.40719 -14.14829 -14.00458 -13.74767 -13.60300 -13.55397 -13.15819 -12.96796 -12.83509 -12.79866 -12.72671 -12.57147 -12.44383 -12.39471 -12.06206 -11.98249 -11.83780 -11.56183 -11.44527 -11.19336 -11.12355 -10.97183 -10.91033 -10.59626 -10.31482 -10.30052 -9.86197 -8.52458 -7.78185 -5.26554 0.68880 1.35336 1.44419 1.48826 1.55336 1.56517 1.66803 2.20721 2.53616 3.32044 3.41650 3.56140 3.63490 3.66241 3.72665 3.80192 3.86762 3.99847 4.06661 4.25114 4.29879 4.30666 4.36698 4.43047 4.48960 4.50626 4.61436 4.67741 4.70276 4.76660 4.81823 4.90693 4.92483 4.97140 5.03125 5.11705 5.13650 5.17871 5.31223 5.32307 5.32583 5.41227 5.52092 5.57781 5.65172 5.66955 5.72667 5.78106 6.01402 6.46331 6.51678 7.17724 7.27310 7.55728 8.07723 8.37784 9.21898 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.002383 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.443780 B =11749.397768 C =12466.575419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C -0.120 4.120 4 C 0.146 3.854 5 H 0.094 0.906 6 N -0.698 5.698 7 C 0.527 3.473 8 O -0.574 6.574 9 C -0.144 4.144 10 C 0.132 3.868 11 N -0.289 5.289 12 C -0.032 4.032 13 C -0.067 4.067 14 N -0.314 5.314 15 N -0.126 5.126 16 C -0.124 4.124 17 H 0.073 0.927 18 C -0.102 4.102 19 C -0.136 4.136 20 C 0.191 3.809 21 N -0.580 5.580 22 C -0.267 4.267 23 H 0.060 0.940 24 C -0.039 4.039 25 N -0.924 5.924 26 Si 0.952 3.048 27 H -0.271 1.271 28 H -0.295 1.295 29 H -0.295 1.295 30 C 0.173 3.827 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.055 0.945 38 H 0.411 0.589 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.234 0.766 44 H 0.217 0.783 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.068 0.932 49 H 0.026 0.974 50 H 0.020 0.980 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 1.153 20.438 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 C -0.178 4.178 4 C 0.040 3.960 5 H 0.112 0.888 6 N -0.348 5.348 7 C 0.314 3.686 8 O -0.454 6.454 9 C -0.185 4.185 10 C 0.012 3.988 11 N -0.083 5.083 12 C -0.184 4.184 13 C -0.224 4.224 14 N -0.180 5.180 15 N -0.105 5.105 16 C -0.145 4.145 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.174 4.174 20 C 0.066 3.934 21 N -0.298 5.298 22 C -0.398 4.398 23 H 0.078 0.922 24 C -0.236 4.236 25 N -0.569 5.569 26 Si 0.782 3.218 27 H -0.195 1.195 28 H -0.222 1.222 29 H -0.223 1.223 30 C 0.064 3.936 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.249 0.751 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.156 0.844 43 H 0.250 0.750 44 H 0.234 0.766 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.045 0.955 50 H 0.037 0.963 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.712 0.031 19.595 21.869 hybrid contribution -0.422 1.071 -0.988 1.517 sum 9.289 1.102 18.607 20.826 Atomic orbital electron populations 1.21915 0.93661 1.03208 0.99827 1.22828 0.96155 0.95520 0.96816 1.21520 1.00345 0.95325 1.00571 1.21966 0.83231 0.95114 0.95726 0.88764 1.45698 1.14593 1.57039 1.17497 1.20530 0.88800 0.78219 0.81050 1.90719 1.61190 1.41646 1.51810 1.21789 0.93631 1.05338 0.97744 1.21939 0.75623 1.03594 0.97669 1.47723 1.08938 1.35707 1.15968 1.24460 0.98109 1.01534 0.94262 1.24266 0.94630 1.05039 0.98487 1.75080 1.21468 1.13092 1.08330 1.78276 0.88901 1.22033 1.21315 1.23174 0.98349 0.96438 0.96562 0.90886 1.21495 0.95948 0.99980 0.96526 1.21956 1.00677 0.98454 0.96358 1.20062 0.87957 0.88874 0.96540 1.43020 1.27493 1.53130 1.06130 1.19508 0.91820 1.33224 0.95263 0.92203 1.25601 0.95722 1.00237 1.02019 1.70211 1.00327 1.53042 1.33363 0.85439 0.77874 0.76643 0.81837 1.19513 1.22163 1.22281 1.21558 0.93701 0.93473 0.84855 0.91133 0.92605 0.95255 0.89795 0.91408 0.94692 0.92567 0.75072 0.86031 0.86900 0.87860 0.84378 0.74984 0.76646 0.91349 0.90345 0.93333 0.91317 0.95528 0.96264 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 7.38 71.98 0.53 -4.09 16 2 C -0.11 -3.50 1.34 -51.76 -0.07 -3.57 16 3 C -0.12 -3.49 8.90 71.98 0.64 -2.85 16 4 C 0.15 3.98 3.34 45.67 0.15 4.13 16 5 H 0.09 2.73 7.35 -2.39 -0.02 2.71 16 6 N -0.70 -14.72 4.71 -439.31 -2.07 -16.79 16 7 C 0.53 10.36 7.83 87.66 0.69 11.05 16 8 O -0.57 -14.97 15.58 -3.04 -0.05 -15.02 16 9 C -0.14 -1.86 5.83 29.85 0.17 -1.69 16 10 C 0.13 1.58 5.74 86.38 0.50 2.08 16 11 N -0.29 -4.41 3.44 -347.74 -1.20 -5.61 16 12 C -0.03 -0.33 11.57 83.49 0.97 0.63 16 13 C -0.07 -0.95 12.05 83.73 1.01 0.06 16 14 N -0.31 -7.35 12.41 -58.25 -0.72 -8.07 16 15 N -0.13 -2.87 12.91 37.02 0.48 -2.40 16 16 C -0.12 -3.87 4.12 -10.31 -0.04 -3.91 16 17 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 18 C -0.10 -3.19 5.18 30.62 0.16 -3.03 16 19 C -0.14 -4.89 6.03 30.58 0.18 -4.71 16 20 C 0.19 8.74 3.93 86.80 0.34 9.08 16 21 N -0.58 -26.63 2.61 -686.16 -1.79 -28.42 16 22 C -0.27 -13.90 9.40 84.03 0.79 -13.11 16 23 H 0.06 3.09 7.86 -2.92 -0.02 3.07 16 24 C -0.04 -2.12 4.76 84.86 0.40 -1.72 16 25 N -0.92 -52.13 11.08 21.65 0.24 -51.89 16 26 Si 0.95 44.00 29.59 68.60 2.03 46.03 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 29 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 30 C 0.17 6.34 3.40 45.45 0.15 6.49 16 31 H 0.07 2.56 7.90 -2.39 -0.02 2.54 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.03 1.20 8.04 -2.39 -0.02 1.19 16 34 H 0.08 3.23 1.92 -2.39 0.00 3.22 16 35 H 0.07 1.56 6.02 -2.39 -0.01 1.55 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.41 7.37 6.83 -92.70 -0.63 6.74 16 39 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 1.55 8.12 -2.39 -0.02 1.53 16 41 H 0.10 1.41 8.10 -2.39 -0.02 1.39 16 42 H 0.14 1.05 8.03 -2.39 -0.02 1.03 16 43 H 0.23 0.13 8.06 -2.91 -0.02 0.11 16 44 H 0.22 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.08 2.47 4.71 -2.39 -0.01 2.46 16 47 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 49 H 0.03 1.40 6.56 -2.39 -0.02 1.38 16 50 H 0.02 0.97 5.52 -2.39 -0.01 0.96 16 51 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -70.78 390.96 3.82 -66.96 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.32 Total: 20.33 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 6.58 Total: -5.14 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -5.06 Total: -113.17 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.05 Total: -15.02 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -70.78 3.82 -66.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030714.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.429 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds