Wall clock time and date at job start Wed Apr 1 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 113.31432 * 2 1 4 4 C 1.55784 * 114.08211 * 132.78801 * 2 1 3 5 5 H 1.08993 * 114.12521 * 322.87065 * 4 2 1 6 6 N 1.46501 * 114.12527 * 190.48486 * 4 2 1 7 7 C 1.34772 * 119.99891 * 158.13804 * 6 4 2 8 8 O 1.21286 * 120.00019 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00251 * 180.02562 * 7 6 4 10 10 C 1.53002 * 109.47263 * 180.02562 * 9 7 6 11 11 N 1.46500 * 109.46935 * 180.02562 * 10 9 7 12 12 C 1.35312 * 125.87087 * 124.99898 * 11 10 9 13 13 C 1.35354 * 106.17683 * 179.97438 * 12 11 10 14 14 N 1.33769 * 106.49220 * 0.02562 * 13 12 11 15 15 N 1.28636 * 108.89068 * 359.73192 * 14 13 12 16 16 C 1.50006 * 84.06669 * 76.67921 * 4 2 1 17 17 H 1.09002 * 112.49871 * 283.97375 * 16 4 2 18 18 C 1.51196 * 126.17765 * 141.58473 * 16 4 2 19 19 C 1.54101 * 106.19496 * 198.56388 * 18 16 4 20 20 C 1.52500 * 112.66733 * 55.43234 * 19 18 16 21 21 N 1.48952 * 111.59818 * 313.00126 * 20 19 18 22 22 C 1.36934 * 123.05147 * 232.64919 * 21 20 19 23 23 H 1.07996 * 120.00524 * 150.11227 * 22 21 20 24 24 C 1.38820 * 119.99792 * 330.11113 * 22 21 20 25 25 N 1.31617 * 119.99786 * 347.74146 * 24 22 21 26 26 Si 1.86799 * 120.00009 * 167.74084 * 24 22 21 27 27 H 1.48497 * 109.46871 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47265 * 120.00000 * 26 24 22 29 29 H 1.48504 * 109.46860 * 239.99958 * 26 24 22 30 30 C 1.45383 * 113.78180 * 52.59915 * 21 20 19 31 31 H 1.09003 * 112.09125 * 58.88086 * 30 21 20 32 32 H 1.08994 * 109.47330 * 280.19436 * 1 2 3 33 33 H 1.09005 * 109.47010 * 40.18734 * 1 2 3 34 34 H 1.08994 * 109.47329 * 160.19018 * 1 2 3 35 35 H 1.08995 * 109.47297 * 173.28693 * 3 2 1 36 36 H 1.08999 * 109.46782 * 293.28802 * 3 2 1 37 37 H 1.09001 * 109.46609 * 53.28035 * 3 2 1 38 38 H 0.97000 * 120.00120 * 338.14351 * 6 4 2 39 39 H 1.09005 * 109.46662 * 60.00053 * 9 7 6 40 40 H 1.08996 * 109.46819 * 300.00409 * 9 7 6 41 41 H 1.09002 * 109.46674 * 300.00068 * 10 9 7 42 42 H 1.08993 * 109.47125 * 60.00313 * 10 9 7 43 43 H 1.08000 * 126.90850 * 359.97438 * 12 11 10 44 44 H 1.07994 * 126.75218 * 180.02562 * 13 12 11 45 45 H 1.09002 * 110.10489 * 317.72688 * 18 16 4 46 46 H 1.09003 * 110.10892 * 79.39524 * 18 16 4 47 47 H 1.08994 * 108.84109 * 176.25772 * 19 18 16 48 48 H 1.08999 * 108.83986 * 294.61490 * 19 18 16 49 49 H 1.08999 * 108.99802 * 73.83755 * 20 19 18 50 50 H 1.09006 * 108.99745 * 192.67607 * 20 19 18 51 51 H 0.97003 * 119.99937 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1355 1.4051 0.0000 4 6 2.1656 -0.9661 1.0438 5 1 1.6234 -1.0216 1.9876 6 7 3.6103 -0.7945 1.2165 7 6 4.2085 -1.2168 2.3480 8 8 3.5509 -1.7393 3.2230 9 6 5.6944 -1.0397 2.5260 10 6 6.1155 -1.6001 3.8861 11 7 7.5599 -1.4275 4.0593 12 6 8.1649 -0.8006 5.0947 13 6 9.4949 -0.8728 4.8540 14 7 9.6365 -1.5311 3.6981 15 7 8.4717 -1.8506 3.2555 16 6 1.7885 -2.0307 0.0566 17 1 0.7220 -2.2556 0.0726 18 6 2.6051 -3.2546 -0.2917 19 6 2.0618 -3.7643 -1.6407 20 6 2.0868 -2.6938 -2.7266 21 7 1.5302 -1.4022 -2.2361 22 6 0.5338 -0.7237 -2.8856 23 1 -0.1561 -0.1104 -2.3250 24 6 0.4103 -0.8242 -4.2646 25 7 1.3778 -1.3654 -4.9741 26 14 -1.1287 -0.1913 -5.1132 27 1 -2.0591 0.3667 -4.0992 28 1 -0.7582 0.8703 -6.0831 29 1 -1.7927 -1.3086 -5.8318 30 6 2.1420 -0.9301 -1.0046 31 1 3.2175 -0.7870 -1.1098 32 1 -0.3633 0.1819 1.0114 33 1 -0.3633 0.7851 -0.6632 34 1 -0.3634 -0.9668 -0.3483 35 1 3.2165 1.3349 0.1201 36 1 1.9062 1.8995 -0.9439 37 1 1.7150 1.9819 0.8238 38 1 4.1362 -0.3769 0.5166 39 1 5.9424 0.0206 2.4770 40 1 6.2211 -1.5731 1.7348 41 1 5.5886 -1.0671 4.6775 42 1 5.8675 -2.6604 3.9347 43 1 7.6834 -0.3361 5.9425 44 1 10.2861 -0.4768 5.4733 45 1 3.6575 -2.9877 -0.3887 46 1 2.4804 -4.0191 0.4752 47 1 2.6663 -4.6106 -1.9666 48 1 1.0344 -4.1009 -1.5018 49 1 3.1160 -2.5426 -3.0521 50 1 1.4931 -3.0349 -3.5748 51 1 1.2917 -1.4353 -5.9378 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264030716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:59 Heat of formation + Delta-G solvation = 133.986839 kcal Electronic energy + Delta-G solvation = -31759.425842 eV Core-core repulsion = 27698.681918 eV Total energy + Delta-G solvation = -4060.743924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.50006 -41.27416 -39.21674 -35.60296 -35.24315 -33.47625 -32.93058 -31.43276 -31.19556 -30.16911 -29.39238 -27.24200 -26.16965 -25.60551 -24.33751 -22.95488 -22.44126 -21.84791 -20.69273 -20.50028 -19.22216 -18.29714 -18.16852 -16.86291 -16.75913 -16.58756 -15.86268 -15.42842 -15.18807 -14.83003 -14.60008 -14.14149 -14.05760 -13.86620 -13.82562 -13.65679 -13.25506 -12.95230 -12.80916 -12.63049 -12.44687 -12.15600 -12.08573 -11.83786 -11.75193 -11.39877 -11.20374 -11.16435 -11.09640 -10.91313 -10.71998 -10.49579 -10.47224 -10.24442 -10.13278 -10.02520 -9.97086 -9.88406 -9.67069 -9.36801 -8.91825 -8.79216 -8.43775 -6.56513 -5.79539 -3.25950 1.31356 1.96700 2.32737 2.47608 3.11423 3.33105 3.41326 3.42379 4.01239 4.21752 4.30112 4.44706 4.56673 4.63187 4.73728 4.86527 4.90192 4.93043 5.07013 5.13261 5.22194 5.27065 5.41097 5.49450 5.50892 5.71118 5.81673 5.83895 5.87219 5.89455 5.96430 5.98471 6.21504 6.22146 6.25414 6.31420 6.33727 6.40845 6.51875 6.54836 6.58196 6.69443 6.74814 6.83109 6.97893 7.08345 7.35777 7.45866 7.62078 7.80086 8.10576 8.24603 8.39478 9.14003 9.79844 10.47224 11.28271 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.002438 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.127169 B =11482.542836 C =11828.889813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.133 4.133 4 C 0.140 3.860 5 H 0.096 0.904 6 N -0.697 5.697 7 C 0.523 3.477 8 O -0.545 6.545 9 C -0.157 4.157 10 C 0.133 3.867 11 N -0.290 5.290 12 C -0.049 4.049 13 C -0.055 4.055 14 N -0.273 5.273 15 N -0.083 5.083 16 C -0.173 4.173 17 H 0.100 0.900 18 C -0.083 4.083 19 C -0.136 4.136 20 C 0.169 3.831 21 N -0.571 5.571 22 C -0.245 4.245 23 H 0.075 0.925 24 C 0.002 3.998 25 N -0.905 5.905 26 Si 0.898 3.102 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.152 3.848 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.403 0.597 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.191 0.809 44 H 0.189 0.811 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.047 0.953 48 H 0.049 0.951 49 H 0.016 0.984 50 H 0.085 0.915 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.041 2.862 18.691 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.190 4.190 4 C 0.035 3.965 5 H 0.114 0.886 6 N -0.347 5.347 7 C 0.309 3.691 8 O -0.423 6.423 9 C -0.198 4.198 10 C 0.011 3.989 11 N -0.084 5.084 12 C -0.200 4.200 13 C -0.212 4.212 14 N -0.139 5.139 15 N -0.063 5.063 16 C -0.195 4.195 17 H 0.118 0.882 18 C -0.121 4.121 19 C -0.175 4.175 20 C 0.044 3.956 21 N -0.292 5.292 22 C -0.374 4.374 23 H 0.093 0.907 24 C -0.196 4.196 25 N -0.549 5.549 26 Si 0.728 3.272 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.217 1.217 30 C 0.043 3.957 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.240 0.760 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.208 0.792 44 H 0.206 0.794 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.034 0.966 50 H 0.103 0.897 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.799 1.730 17.735 19.451 hybrid contribution -0.724 1.094 -0.011 1.312 sum 7.075 2.824 17.724 19.291 Atomic orbital electron populations 1.21641 0.91875 1.03834 1.00078 1.21870 0.96644 0.93366 0.94846 1.21669 0.99408 0.96076 1.01876 1.21561 0.79690 0.97314 0.97938 0.88619 1.45706 1.09113 1.60955 1.18936 1.20042 0.88741 0.78200 0.82156 1.90721 1.66084 1.43608 1.41929 1.21885 0.94690 1.04549 0.98667 1.21852 0.72511 1.05270 0.99233 1.47599 1.09327 1.35973 1.15507 1.23745 0.94449 1.05018 0.96790 1.23650 0.95743 1.04604 0.97225 1.75146 1.14942 1.13569 1.10251 1.78340 0.91762 1.19005 1.17202 1.23423 1.00965 0.96156 0.98929 0.88232 1.20992 0.98248 0.96335 0.96483 1.22101 0.99882 0.99227 0.96336 1.20871 0.97205 0.83562 0.93940 1.44030 1.40610 1.19040 1.25558 1.19313 1.04668 1.24820 0.88636 0.90705 1.25187 0.97397 1.00338 0.96700 1.69980 1.30896 1.48560 1.05465 0.86288 0.83075 0.78212 0.79610 1.20226 1.21798 1.21692 1.21813 0.94018 0.92515 0.87316 0.93970 0.93846 0.91682 0.90612 0.93476 0.91717 0.93195 0.76032 0.87987 0.86866 0.86633 0.87139 0.79228 0.79382 0.93258 0.94008 0.93411 0.93176 0.96603 0.89666 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 7.30 37.16 0.27 -1.58 16 2 C -0.07 -1.02 1.39 -158.55 -0.22 -1.24 16 3 C -0.13 -1.83 9.12 37.16 0.34 -1.49 16 4 C 0.14 2.01 3.92 -71.82 -0.28 1.73 16 5 H 0.10 1.43 7.52 -51.93 -0.39 1.04 16 6 N -0.70 -8.37 4.30 -57.65 -0.25 -8.61 16 7 C 0.52 5.94 7.83 -10.99 -0.09 5.85 16 8 O -0.55 -7.82 15.61 5.55 0.09 -7.73 16 9 C -0.16 -1.29 5.83 -27.88 -0.16 -1.45 16 10 C 0.13 1.01 5.74 -4.04 -0.02 0.98 16 11 N -0.29 -2.63 3.44 -61.26 -0.21 -2.84 16 12 C -0.05 -0.34 11.57 -17.05 -0.20 -0.54 16 13 C -0.05 -0.46 12.05 -17.74 -0.21 -0.68 16 14 N -0.27 -3.39 12.41 30.23 0.38 -3.01 16 15 N -0.08 -1.02 12.92 60.35 0.78 -0.24 16 16 C -0.17 -2.89 2.95 -94.91 -0.28 -3.17 16 17 H 0.10 1.80 6.08 -51.93 -0.32 1.49 16 18 C -0.08 -1.39 5.94 -27.07 -0.16 -1.55 16 19 C -0.14 -2.54 5.90 -26.41 -0.16 -2.69 16 20 C 0.17 3.84 5.33 -2.94 -0.02 3.82 16 21 N -0.57 -13.07 2.85 -168.57 -0.48 -13.55 16 22 C -0.24 -6.18 9.07 -15.06 -0.14 -6.31 16 23 H 0.08 1.82 5.13 -52.49 -0.27 1.55 16 24 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 25 N -0.90 -25.42 11.21 55.49 0.62 -24.80 16 26 Si 0.90 20.99 29.57 -169.99 -5.03 15.97 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 C 0.15 2.81 2.96 -71.80 -0.21 2.59 16 31 H 0.04 0.80 6.56 -51.93 -0.34 0.46 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.08 7.06 -51.93 -0.37 0.71 16 34 H 0.08 1.34 5.69 -51.93 -0.30 1.04 16 35 H 0.05 0.57 6.50 -51.93 -0.34 0.23 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.40 4.44 6.24 -40.82 -0.25 4.19 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.12 0.67 8.02 -51.93 -0.42 0.25 16 42 H 0.11 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.19 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.05 0.81 7.99 -51.93 -0.41 0.40 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 2.20 6.30 -51.93 -0.33 1.87 16 51 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -32.00 394.51 -7.72 -39.71 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.93 Total: 4.91 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.63 Total: -5.74 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.84 Total: -53.06 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.00 -7.72 -39.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.700 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds