Wall clock time and date at job start Wed Apr 1 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 113.31432 * 2 1 4 4 C 1.55784 * 114.08211 * 132.78801 * 2 1 3 5 5 H 1.08993 * 114.12521 * 322.87065 * 4 2 1 6 6 N 1.46501 * 114.12527 * 190.48486 * 4 2 1 7 7 C 1.34772 * 119.99891 * 158.13804 * 6 4 2 8 8 O 1.21286 * 120.00019 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00251 * 180.02562 * 7 6 4 10 10 C 1.53002 * 109.47263 * 180.02562 * 9 7 6 11 11 N 1.46500 * 109.46935 * 180.02562 * 10 9 7 12 12 C 1.35312 * 125.87087 * 124.99898 * 11 10 9 13 13 C 1.35354 * 106.17683 * 179.97438 * 12 11 10 14 14 N 1.33769 * 106.49220 * 0.02562 * 13 12 11 15 15 N 1.28636 * 108.89068 * 359.73192 * 14 13 12 16 16 C 1.50006 * 84.06669 * 76.67921 * 4 2 1 17 17 H 1.09002 * 112.49871 * 283.97375 * 16 4 2 18 18 C 1.51196 * 126.17765 * 141.58473 * 16 4 2 19 19 C 1.54101 * 106.19496 * 198.56388 * 18 16 4 20 20 C 1.52500 * 112.66733 * 55.43234 * 19 18 16 21 21 N 1.48952 * 111.59818 * 313.00126 * 20 19 18 22 22 C 1.36934 * 123.05147 * 232.64919 * 21 20 19 23 23 H 1.07996 * 120.00524 * 150.11227 * 22 21 20 24 24 C 1.38820 * 119.99792 * 330.11113 * 22 21 20 25 25 N 1.31617 * 119.99786 * 347.74146 * 24 22 21 26 26 Si 1.86799 * 120.00009 * 167.74084 * 24 22 21 27 27 H 1.48497 * 109.46871 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47265 * 120.00000 * 26 24 22 29 29 H 1.48504 * 109.46860 * 239.99958 * 26 24 22 30 30 C 1.45383 * 113.78180 * 52.59915 * 21 20 19 31 31 H 1.09003 * 112.09125 * 58.88086 * 30 21 20 32 32 H 1.08994 * 109.47330 * 280.19436 * 1 2 3 33 33 H 1.09005 * 109.47010 * 40.18734 * 1 2 3 34 34 H 1.08994 * 109.47329 * 160.19018 * 1 2 3 35 35 H 1.08995 * 109.47297 * 173.28693 * 3 2 1 36 36 H 1.08999 * 109.46782 * 293.28802 * 3 2 1 37 37 H 1.09001 * 109.46609 * 53.28035 * 3 2 1 38 38 H 0.97000 * 120.00120 * 338.14351 * 6 4 2 39 39 H 1.09005 * 109.46662 * 60.00053 * 9 7 6 40 40 H 1.08996 * 109.46819 * 300.00409 * 9 7 6 41 41 H 1.09002 * 109.46674 * 300.00068 * 10 9 7 42 42 H 1.08993 * 109.47125 * 60.00313 * 10 9 7 43 43 H 1.08000 * 126.90850 * 359.97438 * 12 11 10 44 44 H 1.07994 * 126.75218 * 180.02562 * 13 12 11 45 45 H 1.09002 * 110.10489 * 317.72688 * 18 16 4 46 46 H 1.09003 * 110.10892 * 79.39524 * 18 16 4 47 47 H 1.08994 * 108.84109 * 176.25772 * 19 18 16 48 48 H 1.08999 * 108.83986 * 294.61490 * 19 18 16 49 49 H 1.08999 * 108.99802 * 73.83755 * 20 19 18 50 50 H 1.09006 * 108.99745 * 192.67607 * 20 19 18 51 51 H 0.97003 * 119.99937 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1355 1.4051 0.0000 4 6 2.1656 -0.9661 1.0438 5 1 1.6234 -1.0216 1.9876 6 7 3.6103 -0.7945 1.2165 7 6 4.2085 -1.2168 2.3480 8 8 3.5509 -1.7393 3.2230 9 6 5.6944 -1.0397 2.5260 10 6 6.1155 -1.6001 3.8861 11 7 7.5599 -1.4275 4.0593 12 6 8.1649 -0.8006 5.0947 13 6 9.4949 -0.8728 4.8540 14 7 9.6365 -1.5311 3.6981 15 7 8.4717 -1.8506 3.2555 16 6 1.7885 -2.0307 0.0566 17 1 0.7220 -2.2556 0.0726 18 6 2.6051 -3.2546 -0.2917 19 6 2.0618 -3.7643 -1.6407 20 6 2.0868 -2.6938 -2.7266 21 7 1.5302 -1.4022 -2.2361 22 6 0.5338 -0.7237 -2.8856 23 1 -0.1561 -0.1104 -2.3250 24 6 0.4103 -0.8242 -4.2646 25 7 1.3778 -1.3654 -4.9741 26 14 -1.1287 -0.1913 -5.1132 27 1 -2.0591 0.3667 -4.0992 28 1 -0.7582 0.8703 -6.0831 29 1 -1.7927 -1.3086 -5.8318 30 6 2.1420 -0.9301 -1.0046 31 1 3.2175 -0.7870 -1.1098 32 1 -0.3633 0.1819 1.0114 33 1 -0.3633 0.7851 -0.6632 34 1 -0.3634 -0.9668 -0.3483 35 1 3.2165 1.3349 0.1201 36 1 1.9062 1.8995 -0.9439 37 1 1.7150 1.9819 0.8238 38 1 4.1362 -0.3769 0.5166 39 1 5.9424 0.0206 2.4770 40 1 6.2211 -1.5731 1.7348 41 1 5.5886 -1.0671 4.6775 42 1 5.8675 -2.6604 3.9347 43 1 7.6834 -0.3361 5.9425 44 1 10.2861 -0.4768 5.4733 45 1 3.6575 -2.9877 -0.3887 46 1 2.4804 -4.0191 0.4752 47 1 2.6663 -4.6106 -1.9666 48 1 1.0344 -4.1009 -1.5018 49 1 3.1160 -2.5426 -3.0521 50 1 1.4931 -3.0349 -3.5748 51 1 1.2917 -1.4353 -5.9378 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264030716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:57 Heat of formation + Delta-G solvation = 113.818916 kcal Electronic energy + Delta-G solvation = -31760.300388 eV Core-core repulsion = 27698.681918 eV Total energy + Delta-G solvation = -4061.618470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.15308 -42.55866 -40.24702 -36.93613 -36.17657 -34.79838 -34.43035 -32.28868 -31.94060 -31.73817 -30.73326 -28.49642 -27.53807 -26.89791 -25.63768 -23.96483 -23.57774 -22.65981 -22.13631 -21.49764 -20.60193 -19.66649 -18.87802 -18.45758 -17.63182 -17.38830 -16.86348 -16.57095 -16.48071 -15.79940 -15.70089 -15.44022 -15.40756 -15.33937 -14.90411 -14.67269 -14.50094 -14.10081 -14.06290 -13.91867 -13.67197 -13.52541 -13.19374 -12.94350 -12.79897 -12.77908 -12.72948 -12.45545 -12.39606 -12.28649 -12.02880 -11.93229 -11.82731 -11.67546 -11.59897 -11.37713 -11.19025 -10.97333 -10.90107 -10.58180 -10.29474 -10.23172 -9.93530 -8.44892 -7.77755 -5.26137 0.69688 1.36186 1.44560 1.47840 1.55973 1.57268 1.67553 2.19609 2.53420 3.27708 3.36985 3.42444 3.49748 3.64115 3.70841 3.73546 3.85925 3.95465 4.15224 4.25172 4.25546 4.30370 4.37222 4.38453 4.49627 4.50953 4.59536 4.64584 4.68326 4.74053 4.79322 4.87816 4.92049 4.99030 5.04396 5.11835 5.14876 5.20059 5.24797 5.32231 5.32310 5.36226 5.52093 5.55848 5.56941 5.67855 5.71759 5.79013 5.82708 6.45064 6.50431 7.17133 7.17950 7.56576 7.89745 8.55736 9.27316 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.002438 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.127169 B =11482.542836 C =11828.889813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.063 4.063 3 C -0.129 4.129 4 C 0.162 3.838 5 H 0.100 0.900 6 N -0.696 5.696 7 C 0.530 3.470 8 O -0.571 6.571 9 C -0.146 4.146 10 C 0.133 3.867 11 N -0.289 5.289 12 C -0.031 4.031 13 C -0.067 4.067 14 N -0.315 5.315 15 N -0.128 5.128 16 C -0.163 4.163 17 H 0.086 0.914 18 C -0.076 4.076 19 C -0.126 4.126 20 C 0.176 3.824 21 N -0.587 5.587 22 C -0.234 4.234 23 H 0.084 0.916 24 C -0.057 4.057 25 N -0.941 5.941 26 Si 0.954 3.046 27 H -0.262 1.262 28 H -0.297 1.297 29 H -0.298 1.298 30 C 0.134 3.866 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.409 0.591 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.141 0.859 42 H 0.102 0.898 43 H 0.235 0.765 44 H 0.217 0.783 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.045 0.955 49 H -0.007 1.007 50 H 0.048 0.952 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 4.228 22.236 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.186 4.186 4 C 0.056 3.944 5 H 0.118 0.882 6 N -0.347 5.347 7 C 0.317 3.683 8 O -0.451 6.451 9 C -0.186 4.186 10 C 0.012 3.988 11 N -0.083 5.083 12 C -0.183 4.183 13 C -0.225 4.225 14 N -0.180 5.180 15 N -0.107 5.107 16 C -0.185 4.185 17 H 0.104 0.896 18 C -0.113 4.113 19 C -0.165 4.165 20 C 0.051 3.949 21 N -0.309 5.309 22 C -0.364 4.364 23 H 0.101 0.899 24 C -0.252 4.252 25 N -0.589 5.589 26 Si 0.784 3.216 27 H -0.186 1.186 28 H -0.225 1.225 29 H -0.226 1.226 30 C 0.027 3.973 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.247 0.753 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.159 0.841 42 H 0.120 0.880 43 H 0.251 0.749 44 H 0.234 0.766 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.011 0.989 50 H 0.066 0.934 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.920 3.099 21.302 22.937 hybrid contribution -0.736 0.672 -0.994 1.408 sum 7.184 3.771 20.308 21.868 Atomic orbital electron populations 1.21578 0.92113 1.02073 1.01446 1.21883 0.96563 0.94350 0.93666 1.21633 1.00554 0.94755 1.01659 1.21225 0.81113 0.94960 0.97102 0.88167 1.45665 1.08145 1.61256 1.19591 1.20440 0.89718 0.76961 0.81180 1.90718 1.66999 1.44620 1.42726 1.21793 0.91952 1.05847 0.99055 1.21939 0.72006 1.05208 0.99602 1.47728 1.09392 1.35574 1.15633 1.24469 0.94003 1.03075 0.96734 1.24273 0.97526 1.04180 0.96489 1.75083 1.15619 1.15056 1.12282 1.78294 0.92349 1.21148 1.18888 1.23349 1.00332 0.95794 0.98985 0.89552 1.20920 0.98314 0.96751 0.95360 1.21938 1.00162 0.98178 0.96256 1.20663 0.94926 0.84920 0.94362 1.44219 1.40753 1.19412 1.26482 1.19688 1.04848 1.23214 0.88698 0.89863 1.25856 0.99843 1.01834 0.97650 1.70140 1.32733 1.51026 1.04996 0.85383 0.80511 0.77102 0.78626 1.18626 1.22491 1.22570 1.22124 0.94031 0.95344 0.85823 0.93971 0.90974 0.92809 0.92880 0.91824 0.93770 0.90990 0.75315 0.85954 0.87338 0.84141 0.87964 0.74855 0.76629 0.92780 0.92574 0.91935 0.93618 0.98920 0.93388 0.94670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.44 7.30 71.98 0.53 -2.92 16 2 C -0.06 -1.84 1.39 -54.80 -0.08 -1.92 16 3 C -0.13 -3.22 9.12 71.98 0.66 -2.57 16 4 C 0.16 4.25 3.92 42.47 0.17 4.41 16 5 H 0.10 2.66 7.52 -2.39 -0.02 2.64 16 6 N -0.70 -14.79 4.30 -454.69 -1.95 -16.74 16 7 C 0.53 10.44 7.83 87.66 0.69 11.13 16 8 O -0.57 -14.64 15.61 -3.05 -0.05 -14.69 16 9 C -0.15 -1.98 5.83 29.85 0.17 -1.81 16 10 C 0.13 1.64 5.74 86.38 0.50 2.13 16 11 N -0.29 -4.55 3.44 -347.73 -1.20 -5.74 16 12 C -0.03 -0.33 11.57 83.49 0.97 0.64 16 13 C -0.07 -0.98 12.05 83.73 1.01 0.03 16 14 N -0.32 -7.59 12.41 -58.26 -0.72 -8.32 16 15 N -0.13 -3.02 12.92 37.02 0.48 -2.54 16 16 C -0.16 -5.22 2.95 -13.57 -0.04 -5.26 16 17 H 0.09 3.05 6.08 -2.39 -0.01 3.03 16 18 C -0.08 -2.44 5.94 30.38 0.18 -2.25 16 19 C -0.13 -4.71 5.90 30.80 0.18 -4.53 16 20 C 0.18 8.31 5.33 85.74 0.46 8.77 16 21 N -0.59 -27.36 2.85 -687.22 -1.96 -29.32 16 22 C -0.23 -12.01 9.07 84.04 0.76 -11.25 16 23 H 0.08 4.06 5.13 -2.91 -0.01 4.05 16 24 C -0.06 -3.13 5.11 84.86 0.43 -2.70 16 25 N -0.94 -55.25 11.21 21.65 0.24 -55.01 16 26 Si 0.95 44.24 29.57 68.60 2.03 46.27 16 27 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 C 0.13 4.87 2.96 43.08 0.13 4.99 16 31 H 0.04 1.56 6.56 -2.39 -0.02 1.55 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.72 7.06 -2.38 -0.02 1.70 16 34 H 0.05 1.83 5.69 -2.39 -0.01 1.82 16 35 H 0.06 1.36 6.50 -2.39 -0.02 1.35 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.41 7.94 6.24 -92.71 -0.58 7.36 16 39 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.11 1.66 8.12 -2.39 -0.02 1.64 16 41 H 0.14 1.03 8.02 -2.39 -0.02 1.02 16 42 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 43 H 0.24 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.22 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.05 1.69 7.99 -2.39 -0.02 1.67 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 49 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 50 H 0.05 2.60 6.30 -2.38 -0.02 2.59 16 51 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -72.92 394.51 3.95 -68.97 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.37 Total: 20.21 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 6.71 Total: -3.09 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -5.11 Total: -117.67 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.05 Total: -14.69 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -72.92 3.95 -68.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.793 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds