Wall clock time and date at job start Wed Apr 1 2020 04:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 113.30766 * 2 1 4 4 C 1.55777 * 114.08549 * 132.79471 * 2 1 3 5 5 H 1.09001 * 114.29498 * 37.07738 * 4 2 1 6 6 N 1.46501 * 114.12330 * 264.53498 * 4 2 1 7 7 C 1.34775 * 120.00053 * 161.35783 * 6 4 2 8 8 O 1.21280 * 120.00283 * 359.97438 * 7 6 4 9 9 C 1.50707 * 120.00009 * 179.97438 * 7 6 4 10 10 C 1.52997 * 109.47064 * 179.97438 * 9 7 6 11 11 N 1.46501 * 109.47108 * 180.02562 * 10 9 7 12 12 C 1.35306 * 125.87211 * 124.99609 * 11 10 9 13 13 C 1.35356 * 106.17824 * 179.97438 * 12 11 10 14 14 N 1.33765 * 106.49522 * 0.02562 * 13 12 11 15 15 N 1.28644 * 108.88497 * 359.72940 * 14 13 12 16 16 C 1.50010 * 83.86537 * 150.81084 * 4 2 1 17 17 H 1.09004 * 112.50545 * 76.11808 * 16 4 2 18 18 C 1.51203 * 126.16040 * 218.52339 * 16 4 2 19 19 C 1.54093 * 106.19579 * 161.40906 * 18 16 4 20 20 C 1.52497 * 112.67405 * 304.55895 * 19 18 16 21 21 N 1.48406 * 111.86654 * 46.78733 * 20 19 18 22 22 C 1.36941 * 123.16678 * 128.16055 * 21 20 19 23 23 H 1.07996 * 119.99646 * 207.44705 * 22 21 20 24 24 C 1.38814 * 119.99702 * 27.45072 * 22 21 20 25 25 N 1.31614 * 120.00194 * 11.10239 * 24 22 21 26 26 Si 1.86796 * 119.99648 * 191.09934 * 24 22 21 27 27 H 1.48496 * 109.47222 * 89.99911 * 26 24 22 28 28 H 1.48504 * 109.47059 * 210.00092 * 26 24 22 29 29 H 1.48505 * 109.47277 * 330.00086 * 26 24 22 30 30 C 1.45378 * 113.66446 * 308.16129 * 21 20 19 31 31 H 1.09000 * 112.08815 * 300.24920 * 30 21 20 32 32 H 1.08992 * 109.47349 * 306.71231 * 1 2 3 33 33 H 1.09002 * 109.47634 * 66.71721 * 1 2 3 34 34 H 1.09004 * 109.47436 * 186.71179 * 1 2 3 35 35 H 1.09008 * 109.47255 * 199.93549 * 3 2 1 36 36 H 1.09000 * 109.47544 * 319.93127 * 3 2 1 37 37 H 1.08995 * 109.47397 * 79.93442 * 3 2 1 38 38 H 0.97003 * 120.00162 * 341.34643 * 6 4 2 39 39 H 1.08998 * 109.46809 * 59.99252 * 9 7 6 40 40 H 1.08995 * 109.47144 * 299.99925 * 9 7 6 41 41 H 1.09003 * 109.47156 * 299.99590 * 10 9 7 42 42 H 1.08997 * 109.47130 * 59.99837 * 10 9 7 43 43 H 1.08003 * 126.91082 * 0.02648 * 12 11 10 44 44 H 1.07996 * 126.75208 * 179.97438 * 13 12 11 45 45 H 1.09006 * 110.09685 * 280.57351 * 18 16 4 46 46 H 1.08991 * 110.10530 * 42.23526 * 18 16 4 47 47 H 1.09000 * 108.83740 * 183.73510 * 19 18 16 48 48 H 1.09004 * 108.84080 * 65.38452 * 19 18 16 49 49 H 1.09005 * 108.99830 * 286.17444 * 20 19 18 50 50 H 1.08994 * 108.93694 * 167.36550 * 20 19 18 51 51 H 0.97003 * 119.99780 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1353 1.4051 0.0000 4 6 2.1657 -0.9662 1.0436 5 1 1.6251 -1.9036 1.1744 6 7 2.5263 -0.3256 2.3108 7 6 2.7257 -1.0759 3.4124 8 8 2.6062 -2.2814 3.3549 9 6 3.0973 -0.4169 4.7159 10 6 3.2635 -1.4854 5.7983 11 7 3.6241 -0.8448 7.0655 12 6 2.9668 -0.9847 8.2399 13 6 3.6354 -0.2254 9.1391 14 7 4.6552 0.3349 8.4794 15 7 4.6238 -0.0562 7.2542 16 6 3.2890 -1.0395 0.0521 17 1 3.9181 -0.1494 0.0677 18 6 4.0875 -2.2738 -0.3019 19 6 4.7654 -1.9743 -1.6529 20 6 3.7687 -1.5709 -2.7342 21 7 2.8026 -0.5563 -2.2446 22 6 2.5567 0.6212 -2.8991 23 1 2.2260 1.4877 -2.3458 24 6 2.7323 0.7009 -4.2738 25 7 2.9204 -0.3951 -4.9779 26 14 2.7017 2.3637 -5.1244 27 1 4.0764 2.9237 -5.1661 28 1 2.1908 2.2019 -6.5093 29 1 1.8135 3.2874 -4.3738 30 6 2.1419 -0.9301 -1.0047 31 1 1.5797 -1.8586 -1.1037 32 1 -0.3633 0.6143 0.8238 33 1 -0.3634 0.4062 -0.9440 34 1 -0.3634 -1.0206 0.1201 35 1 3.1664 1.3565 -0.3504 36 1 1.5569 2.0500 -0.6615 37 1 2.1142 1.8099 1.0118 38 1 2.6217 0.6387 2.3569 39 1 2.3101 0.2776 5.0091 40 1 4.0343 0.1264 4.5942 41 1 2.3262 -2.0283 5.9199 42 1 4.0505 -2.1802 5.5051 43 1 2.0863 -1.5827 8.4231 44 1 3.3927 -0.0967 10.1835 45 1 4.8418 -2.4637 0.4618 46 1 3.4249 -3.1338 -0.3978 47 1 5.3015 -2.8643 -1.9825 48 1 5.4823 -1.1648 -1.5152 49 1 3.2204 -2.4552 -3.0592 50 1 4.3149 -1.1603 -3.5833 51 1 3.0435 -0.3393 -5.9384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264030717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:02 Heat of formation + Delta-G solvation = 107.081173 kcal Electronic energy + Delta-G solvation = -31476.267888 eV Core-core repulsion = 27414.357248 eV Total energy + Delta-G solvation = -4061.910641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -44.15207 -42.42305 -40.31428 -37.00939 -36.17313 -34.77065 -34.52009 -32.29101 -31.94505 -31.73536 -30.81696 -28.60938 -27.54061 -26.96171 -25.55774 -23.84764 -23.54838 -22.67281 -21.97966 -21.26709 -20.87760 -19.82484 -18.88650 -18.39746 -17.65250 -17.33351 -17.09943 -16.69764 -16.31343 -15.86556 -15.69958 -15.55255 -15.41033 -14.96859 -14.83578 -14.72223 -14.49267 -14.19074 -14.10034 -13.95885 -13.60754 -13.40528 -13.09604 -12.91259 -12.78853 -12.78432 -12.72320 -12.49264 -12.39971 -12.34466 -12.07456 -11.89567 -11.82941 -11.67176 -11.64928 -11.53356 -11.18618 -11.10574 -10.84060 -10.58120 -10.29563 -10.26900 -9.88293 -8.50415 -7.77345 -5.24652 0.69700 1.36609 1.47183 1.48470 1.55930 1.60334 1.67413 2.26350 2.55056 3.27466 3.38513 3.43644 3.44874 3.64844 3.70907 3.73235 3.86304 3.89115 4.12902 4.25345 4.26609 4.31158 4.36726 4.37347 4.48903 4.51722 4.62328 4.65492 4.68272 4.70253 4.77521 4.83691 4.92056 4.98102 5.04042 5.10674 5.13683 5.18298 5.25572 5.31823 5.32727 5.36657 5.47977 5.54758 5.61699 5.67682 5.73336 5.77008 5.82620 6.43918 6.57525 7.17181 7.23717 7.56392 7.89707 8.54388 9.28425 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.002291 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.760066 B =12219.633659 C =12567.646320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.117 4.117 4 C 0.164 3.836 5 H 0.105 0.895 6 N -0.701 5.701 7 C 0.524 3.476 8 O -0.577 6.577 9 C -0.144 4.144 10 C 0.131 3.869 11 N -0.289 5.289 12 C -0.033 4.033 13 C -0.066 4.066 14 N -0.314 5.314 15 N -0.126 5.126 16 C -0.154 4.154 17 H 0.088 0.912 18 C -0.083 4.083 19 C -0.125 4.125 20 C 0.173 3.827 21 N -0.583 5.583 22 C -0.233 4.233 23 H 0.088 0.912 24 C -0.062 4.062 25 N -0.944 5.944 26 Si 0.959 3.041 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.264 1.264 30 C 0.128 3.872 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.413 0.587 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.233 0.767 44 H 0.217 0.783 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.047 0.953 49 H -0.012 1.012 50 H 0.057 0.943 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -0.419 25.039 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.174 4.174 4 C 0.058 3.942 5 H 0.123 0.877 6 N -0.352 5.352 7 C 0.310 3.690 8 O -0.457 6.457 9 C -0.184 4.184 10 C 0.011 3.989 11 N -0.083 5.083 12 C -0.184 4.184 13 C -0.224 4.224 14 N -0.180 5.180 15 N -0.105 5.105 16 C -0.176 4.176 17 H 0.106 0.894 18 C -0.121 4.121 19 C -0.164 4.164 20 C 0.048 3.952 21 N -0.305 5.305 22 C -0.363 4.363 23 H 0.105 0.895 24 C -0.256 4.256 25 N -0.592 5.592 26 Si 0.789 3.211 27 H -0.217 1.217 28 H -0.230 1.230 29 H -0.188 1.188 30 C 0.020 3.980 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.251 0.749 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.119 0.881 43 H 0.250 0.750 44 H 0.233 0.767 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.006 0.994 50 H 0.075 0.925 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.957 -0.522 24.101 24.288 hybrid contribution -0.656 0.249 -1.151 1.348 sum -3.613 -0.272 22.950 23.234 Atomic orbital electron populations 1.21672 0.93269 1.01909 1.01800 1.21838 0.95623 0.95305 0.93158 1.21593 1.00790 0.93418 1.01640 1.21957 0.95492 0.96289 0.80415 0.87721 1.45899 1.69491 1.11355 1.08499 1.20564 0.75851 0.86966 0.85574 1.90728 1.52986 1.15674 1.86281 1.21789 1.06377 0.99357 0.90895 1.21942 1.05215 0.94181 0.77587 1.47718 1.18404 1.30926 1.11238 1.24458 1.03538 1.05891 0.84511 1.24261 0.94690 1.00095 1.03367 1.75081 1.21945 1.22055 0.98883 1.78279 1.09113 1.09450 1.13687 1.23298 0.97148 0.99051 0.98060 0.89408 1.21050 0.98583 0.96878 0.95604 1.21935 0.98302 1.00088 0.96083 1.20657 0.90062 0.89779 0.94719 1.44013 1.42522 1.18767 1.25227 1.19699 1.38569 0.89006 0.89015 0.89478 1.25855 1.02870 0.99352 0.97500 1.70134 1.56121 1.27487 1.05427 0.85368 0.77594 0.80688 0.77482 1.21747 1.23006 1.18847 1.21649 0.94285 0.95938 0.86125 0.94894 0.90495 0.93703 0.92710 0.92735 0.92706 0.90274 0.74915 0.85851 0.86997 0.84424 0.88114 0.75014 0.76653 0.92363 0.93134 0.91868 0.93450 0.99396 0.92473 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.21 71.98 0.66 -2.73 16 2 C -0.06 -1.68 1.37 -55.18 -0.08 -1.75 16 3 C -0.12 -3.19 6.95 71.98 0.50 -2.69 16 4 C 0.16 4.33 3.46 42.46 0.15 4.47 16 5 H 0.10 3.03 7.56 -2.39 -0.02 3.02 16 6 N -0.70 -13.54 5.33 -454.72 -2.43 -15.96 16 7 C 0.52 9.91 7.83 87.66 0.69 10.60 16 8 O -0.58 -15.10 15.65 -3.03 -0.05 -15.15 16 9 C -0.14 -1.72 5.83 29.85 0.17 -1.55 16 10 C 0.13 1.53 5.74 86.38 0.50 2.03 16 11 N -0.29 -4.27 3.44 -347.74 -1.20 -5.46 16 12 C -0.03 -0.32 11.57 83.49 0.97 0.65 16 13 C -0.07 -0.91 12.05 83.73 1.01 0.10 16 14 N -0.31 -7.17 12.41 -58.26 -0.72 -7.89 16 15 N -0.13 -2.80 12.92 37.02 0.48 -2.33 16 16 C -0.15 -4.97 2.84 -14.16 -0.04 -5.01 16 17 H 0.09 2.98 6.08 -2.38 -0.01 2.96 16 18 C -0.08 -2.80 6.12 30.38 0.19 -2.62 16 19 C -0.13 -4.76 5.90 30.80 0.18 -4.58 16 20 C 0.17 8.33 5.30 85.85 0.46 8.79 16 21 N -0.58 -27.72 2.88 -689.93 -1.99 -29.70 16 22 C -0.23 -11.94 9.11 84.03 0.77 -11.18 16 23 H 0.09 4.18 5.19 -2.91 -0.02 4.17 16 24 C -0.06 -3.37 5.16 84.86 0.44 -2.93 16 25 N -0.94 -55.62 10.98 21.65 0.24 -55.39 16 26 Si 0.96 44.11 29.57 68.60 2.03 46.14 16 27 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 30 C 0.13 4.90 3.00 42.87 0.13 5.03 16 31 H 0.03 1.38 8.00 -2.39 -0.02 1.36 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.40 8.12 -2.39 -0.02 1.38 16 35 H 0.05 1.75 5.78 -2.38 -0.01 1.73 16 36 H 0.05 1.63 7.02 -2.39 -0.02 1.61 16 37 H 0.08 1.47 6.51 -2.39 -0.02 1.46 16 38 H 0.41 6.05 6.72 -92.71 -0.62 5.42 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.11 1.43 8.12 -2.39 -0.02 1.41 16 41 H 0.14 1.01 8.03 -2.39 -0.02 0.99 16 42 H 0.10 1.41 8.10 -2.39 -0.02 1.39 16 43 H 0.23 0.04 8.06 -2.91 -0.02 0.01 16 44 H 0.22 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 47 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 49 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 50 H 0.06 3.14 6.10 -2.39 -0.01 3.13 16 51 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -73.92 396.74 3.37 -70.55 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.32 Total: 18.56 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 6.68 Total: -3.38 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -5.62 Total: -116.73 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.05 Total: -15.15 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -73.92 3.37 -70.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.636 kcal (2) G-P(sol) polarization free energy of solvation -73.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds