Wall clock time and date at job start Wed Apr 1 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30834 * 126.46525 * 2 1 4 4 N 1.28910 * 109.74111 * 180.02562 * 3 2 1 5 5 C 1.29837 * 109.47801 * 0.02762 * 4 3 2 6 6 N 1.34695 * 126.46044 * 180.02562 * 2 1 3 7 7 C 1.46251 * 128.85039 * 359.92506 * 6 2 1 8 8 C 1.53320 * 108.73211 * 197.04585 * 7 6 2 9 9 H 1.09004 * 109.45179 * 69.72837 * 8 7 6 10 10 C 1.50697 * 109.45310 * 189.68457 * 8 7 6 11 11 O 1.21284 * 119.99910 * 0.04484 * 10 8 7 12 12 N 1.34777 * 120.00071 * 180.02562 * 10 8 7 13 13 C 1.46502 * 120.00223 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47315 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47025 * 180.02562 * 14 13 12 16 16 H 1.09002 * 110.64202 * 305.69751 * 15 14 13 17 17 C 1.55162 * 110.71709 * 182.55678 * 15 14 13 18 18 C 1.54912 * 101.57717 * 205.95763 * 17 15 14 19 19 N 1.47422 * 104.83500 * 37.00946 * 18 17 15 20 20 C 1.36941 * 125.64669 * 155.83389 * 19 18 17 21 21 H 1.08001 * 119.99819 * 180.02562 * 20 19 18 22 22 C 1.38810 * 119.99744 * 0.02562 * 20 19 18 23 23 N 1.31614 * 120.00450 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99574 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46747 * 90.00369 * 24 22 20 26 26 H 1.48498 * 109.46977 * 210.00134 * 24 22 20 27 27 H 1.48501 * 109.47356 * 330.00346 * 24 22 20 28 28 C 1.47018 * 108.70074 * 335.87099 * 19 18 17 29 29 C 1.53142 * 109.56777 * 309.70432 * 8 7 6 30 30 C 1.50800 * 128.52514 * 179.85910 * 5 4 3 31 31 H 1.08996 * 109.46724 * 269.99347 * 1 2 3 32 32 H 1.09002 * 109.46964 * 29.99313 * 1 2 3 33 33 H 1.08999 * 109.47163 * 149.99591 * 1 2 3 34 34 H 1.09003 * 109.59649 * 77.27500 * 7 6 2 35 35 H 1.08998 * 109.72208 * 316.89483 * 7 6 2 36 36 H 0.97000 * 120.00041 * 0.02562 * 12 10 8 37 37 H 1.09006 * 109.46951 * 59.99484 * 13 12 10 38 38 H 1.09002 * 109.46967 * 299.99853 * 13 12 10 39 39 H 1.08993 * 109.47356 * 59.99839 * 14 13 12 40 40 H 1.09002 * 109.46904 * 299.99795 * 14 13 12 41 41 H 1.08999 * 111.00577 * 324.02794 * 17 15 14 42 42 H 1.09004 * 111.00046 * 87.84773 * 17 15 14 43 43 H 1.09003 * 110.36123 * 155.85332 * 18 17 15 44 44 H 1.09001 * 110.36394 * 278.16548 * 18 17 15 45 45 H 0.97001 * 120.00045 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.88087 * 241.63802 * 28 19 18 47 47 H 1.09003 * 109.87911 * 120.47955 * 28 19 18 48 48 H 1.08990 * 109.50152 * 189.38551 * 29 8 7 49 49 H 1.09002 * 109.49957 * 309.49598 * 29 8 7 50 50 H 1.08996 * 109.73425 * 315.63253 * 30 5 4 51 51 H 1.09008 * 109.72470 * 76.26441 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6156 -0.0015 6 7 2.3075 -1.0833 -0.0005 7 6 1.9367 -2.4980 0.0004 8 6 3.1551 -3.3262 0.4250 9 1 3.3625 -3.1518 1.4808 10 6 2.8690 -4.7892 0.2047 11 8 1.7984 -5.1364 -0.2474 12 7 3.8028 -5.7119 0.5098 13 6 3.5245 -7.1343 0.2962 14 6 4.7397 -7.9612 0.7208 15 6 4.4491 -9.4466 0.4971 16 1 3.5286 -9.7385 1.0026 17 6 5.6397 -10.3174 0.9787 18 6 5.4775 -11.5807 0.0970 19 7 5.0236 -11.0728 -1.2105 20 6 5.1839 -11.7083 -2.4129 21 1 4.8146 -11.2508 -3.3188 22 6 5.8212 -12.9402 -2.4672 23 7 6.2709 -13.4979 -1.3631 24 14 6.0393 -13.8073 -4.1074 25 1 7.3275 -13.3928 -4.7189 26 1 6.0429 -15.2768 -3.8938 27 1 4.9210 -13.4415 -5.0134 28 6 4.3710 -9.7708 -1.0096 29 6 4.3716 -2.9134 -0.4086 30 6 4.8051 -1.4971 -0.0053 31 1 -0.3632 -0.0001 1.0277 32 1 -0.3633 0.8901 -0.5137 33 1 -0.3633 -0.8899 -0.5139 34 1 1.6241 -2.7946 -1.0009 35 1 1.1195 -2.6636 0.7024 36 1 4.6590 -5.4343 0.8715 37 1 3.3163 -7.3093 -0.7594 38 1 2.6595 -7.4285 0.8907 39 1 4.9473 -7.7862 1.7764 40 1 5.6049 -7.6671 0.1267 41 1 6.5906 -9.8226 0.7812 42 1 5.5415 -10.5630 2.0361 43 1 6.4325 -12.0959 -0.0069 44 1 4.7299 -12.2486 0.5249 45 1 6.7159 -14.3590 -1.4011 46 1 3.3286 -9.8263 -1.3233 47 1 4.8920 -9.0030 -1.5815 48 1 5.1903 -3.6095 -0.2270 49 1 4.1094 -2.9272 -1.4666 50 1 5.5306 -1.1168 -0.7244 51 1 5.2487 -1.5151 0.9903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267601473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:40 Heat of formation + Delta-G solvation = 28.200833 kcal Electronic energy + Delta-G solvation = -29977.538801 eV Core-core repulsion = 25912.207652 eV Total energy + Delta-G solvation = -4065.331149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.37997 -41.15739 -39.43932 -37.89754 -36.49258 -35.19957 -34.71647 -32.94565 -32.19884 -31.43029 -30.62013 -28.34983 -28.23781 -26.77735 -25.68237 -24.30740 -23.49999 -22.44403 -21.97168 -21.71692 -20.85630 -20.37535 -18.88647 -18.57508 -17.66417 -17.24229 -17.08993 -16.98975 -16.63697 -16.32328 -15.91950 -15.59571 -15.32714 -15.13571 -14.94101 -14.74993 -14.50307 -14.25180 -13.95039 -13.77434 -13.51507 -13.50522 -13.32619 -13.23799 -13.18470 -13.07716 -12.79188 -12.69367 -12.62700 -12.26749 -12.19005 -12.06468 -12.01220 -11.76414 -11.54189 -11.40564 -11.37801 -11.23749 -11.15399 -10.88518 -10.73171 -10.09963 -10.04141 -8.86473 -7.77281 -5.21217 0.78085 1.35007 1.45597 1.47144 1.51366 1.55846 1.76173 2.13895 2.49380 3.05184 3.25222 3.31617 3.39101 3.54112 3.57498 3.76474 3.78441 3.90189 3.97894 4.00978 4.11131 4.20809 4.25787 4.32251 4.37039 4.39868 4.56340 4.60985 4.66283 4.66887 4.74619 4.78072 4.82576 4.83599 4.92067 4.95859 4.99482 5.04267 5.07111 5.15090 5.21749 5.22522 5.29932 5.43194 5.45512 5.54743 5.71249 5.85214 5.87014 6.33542 6.50536 7.12397 7.18520 7.66329 7.81033 8.44222 9.24143 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.001668 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.217035 B =16779.653629 C =16961.130600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.348 5.348 4 N -0.338 5.338 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.122 3.878 8 C -0.111 4.111 9 H 0.137 0.863 10 C 0.525 3.475 11 O -0.580 6.580 12 N -0.708 5.708 13 C 0.123 3.877 14 C -0.100 4.100 15 C -0.084 4.084 16 H 0.077 0.923 17 C -0.122 4.122 18 C 0.147 3.853 19 N -0.629 5.629 20 C -0.239 4.239 21 H 0.077 0.923 22 C -0.069 4.069 23 N -0.948 5.948 24 Si 0.978 3.022 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.134 3.866 29 C -0.113 4.113 30 C -0.027 4.027 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.420 0.580 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.070 0.930 44 H -0.019 1.019 45 H 0.246 0.754 46 H 0.010 0.990 47 H 0.028 0.972 48 H 0.122 0.878 49 H 0.069 0.931 50 H 0.114 0.886 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 24.228 9.318 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.188 5.188 4 N -0.176 5.176 5 C -0.095 4.095 6 N -0.160 5.160 7 C -0.001 4.001 8 C -0.132 4.132 9 H 0.155 0.845 10 C 0.311 3.689 11 O -0.460 6.460 12 N -0.360 5.360 13 C -0.001 4.001 14 C -0.138 4.138 15 C -0.104 4.104 16 H 0.095 0.905 17 C -0.160 4.160 18 C 0.022 3.978 19 N -0.355 5.355 20 C -0.368 4.368 21 H 0.095 0.905 22 C -0.261 4.261 23 N -0.598 5.598 24 Si 0.807 3.193 25 H -0.210 1.210 26 H -0.220 1.220 27 H -0.198 1.198 28 C 0.009 3.991 29 C -0.152 4.152 30 C -0.067 4.067 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.258 0.742 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.088 0.912 44 H -0.001 1.001 45 H 0.056 0.944 46 H 0.028 0.972 47 H 0.046 0.954 48 H 0.140 0.860 49 H 0.088 0.912 50 H 0.132 0.868 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.795 25.241 8.903 27.385 hybrid contribution -0.203 -2.076 -0.969 2.300 sum -5.997 23.165 7.934 25.210 Atomic orbital electron populations 1.20423 0.81075 1.05669 1.05459 1.25374 0.98584 0.82391 1.02603 1.74391 0.96756 1.25571 1.22053 1.73942 1.12772 1.10077 1.20807 1.25463 0.88527 0.92268 1.03269 1.46116 1.06691 1.08880 1.54335 1.21850 0.98595 0.74339 1.05268 1.21567 0.96266 0.90308 1.05094 0.84485 1.20408 0.83628 0.87995 0.76901 1.90759 1.26172 1.82744 1.46292 1.45827 1.18946 1.06124 1.65090 1.21300 0.98492 0.79494 1.00787 1.21631 0.97090 0.91561 1.03546 1.22016 0.98848 0.95412 0.94117 0.90467 1.22877 0.97877 0.96013 0.99248 1.21770 0.98722 0.93513 0.83751 1.44865 1.67337 1.19652 1.03688 1.19443 1.30793 1.00669 0.85930 0.90525 1.25622 1.01407 0.98406 1.00688 1.70061 1.45201 1.17911 1.26621 0.85078 0.78043 0.77201 0.79012 1.21006 1.22008 1.19813 1.21578 0.94414 0.87125 0.95993 1.21779 0.96990 0.96641 0.99751 1.20454 0.89675 0.90159 1.06376 0.87886 0.88244 0.88657 0.88761 0.86806 0.74232 0.93156 0.91844 0.88246 0.90461 0.91267 0.89682 0.91193 1.00084 0.94380 0.97212 0.95385 0.86021 0.91202 0.86823 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.29 71.24 0.73 0.09 16 2 C 0.18 3.32 8.07 138.14 1.11 4.43 16 3 N -0.35 -9.09 12.23 -50.46 -0.62 -9.70 16 4 N -0.34 -8.66 12.21 -50.27 -0.61 -9.28 16 5 C 0.17 3.03 7.75 138.13 1.07 4.10 16 6 N -0.47 -7.31 3.11 -504.65 -1.57 -8.88 16 7 C 0.12 1.36 5.46 86.53 0.47 1.83 16 8 C -0.11 -0.85 2.54 -11.39 -0.03 -0.88 16 9 H 0.14 0.46 8.12 -2.38 -0.02 0.44 16 10 C 0.52 7.44 7.15 87.66 0.63 8.07 16 11 O -0.58 -13.77 15.83 -3.04 -0.05 -13.81 16 12 N -0.71 -8.07 5.38 -463.05 -2.49 -10.56 16 13 C 0.12 2.22 5.54 86.38 0.48 2.70 16 14 C -0.10 -1.77 4.73 30.59 0.14 -1.62 16 15 C -0.08 -2.40 2.95 -9.60 -0.03 -2.43 16 16 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.12 -3.98 6.53 31.99 0.21 -3.77 16 18 C 0.15 7.08 5.89 86.86 0.51 7.59 16 19 N -0.63 -32.09 3.39 -692.00 -2.35 -34.44 16 20 C -0.24 -13.46 10.27 84.03 0.86 -12.60 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 22 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 23 N -0.95 -56.32 10.09 21.65 0.22 -56.10 16 24 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 C 0.13 5.22 6.12 86.73 0.53 5.76 16 29 C -0.11 -0.62 5.23 30.81 0.16 -0.46 16 30 C -0.03 -0.21 6.34 30.05 0.19 -0.02 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.61 8.03 -2.39 -0.02 0.59 16 34 H 0.09 1.26 7.79 -2.39 -0.02 1.24 16 35 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.42 1.75 7.81 -92.71 -0.72 1.02 16 37 H 0.05 1.18 7.60 -2.38 -0.02 1.16 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.34 8.01 -2.39 -0.02 1.32 16 41 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 42 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.07 3.86 5.87 -2.39 -0.01 3.85 16 44 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.03 1.06 7.74 -2.39 -0.02 1.04 16 48 H 0.12 0.06 7.32 -2.39 -0.02 0.04 16 49 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 50 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 Total: -1.00 -83.90 403.60 2.28 -81.62 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.21 Total: 4.17 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 7.51 Total: 9.33 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -7.42 Total: -128.97 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.05 Total: -13.81 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -83.90 2.28 -81.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267601473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.824 kcal (2) G-P(sol) polarization free energy of solvation -83.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds