Wall clock time and date at job start Wed Apr 1 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30837 * 126.46670 * 2 1 4 4 N 1.28905 * 109.73963 * 179.97438 * 3 2 1 5 5 C 1.29843 * 109.47974 * 359.97438 * 4 3 2 6 6 N 1.34694 * 126.46030 * 179.97438 * 2 1 3 7 7 C 1.46260 * 128.85191 * 0.15847 * 6 2 1 8 8 C 1.53324 * 108.72844 * 162.90704 * 7 6 2 9 9 H 1.09000 * 109.45347 * 290.28593 * 8 7 6 10 10 C 1.50700 * 109.44987 * 170.32865 * 8 7 6 11 11 O 1.21278 * 120.00418 * 0.02562 * 10 8 7 12 12 N 1.34772 * 119.99592 * 179.97438 * 10 8 7 13 13 C 1.46500 * 119.99800 * 180.02562 * 12 10 8 14 14 C 1.53009 * 109.47161 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46944 * 180.02562 * 14 13 12 16 16 H 1.08996 * 110.64314 * 51.85533 * 15 14 13 17 17 C 1.55161 * 110.71574 * 174.99852 * 15 14 13 18 18 C 1.54915 * 101.57651 * 154.04205 * 17 15 14 19 19 N 1.47423 * 104.83394 * 322.98859 * 18 17 15 20 20 C 1.36937 * 125.64616 * 204.08146 * 19 18 17 21 21 H 1.08006 * 119.99613 * 169.99493 * 20 19 18 22 22 C 1.38804 * 120.00391 * 350.00343 * 20 19 18 23 23 N 1.31624 * 120.00023 * 350.41582 * 22 20 19 24 24 Si 1.86796 * 120.00327 * 170.41940 * 22 20 19 25 25 H 1.48502 * 109.47437 * 94.13633 * 24 22 20 26 26 H 1.48507 * 109.47291 * 214.14010 * 24 22 20 27 27 H 1.48503 * 109.47103 * 334.13586 * 24 22 20 28 28 C 1.47021 * 108.70154 * 24.13080 * 19 18 17 29 29 C 1.53139 * 109.57525 * 50.29951 * 8 7 6 30 30 C 1.50796 * 128.52344 * 180.16167 * 5 4 3 31 31 H 1.08999 * 109.47716 * 269.99977 * 1 2 3 32 32 H 1.09005 * 109.47032 * 29.99725 * 1 2 3 33 33 H 1.09000 * 109.47615 * 149.99718 * 1 2 3 34 34 H 1.09006 * 109.59157 * 43.13532 * 7 6 2 35 35 H 1.08996 * 109.71713 * 282.75538 * 7 6 2 36 36 H 0.96994 * 120.00626 * 0.02562 * 12 10 8 37 37 H 1.09001 * 109.47595 * 60.00353 * 13 12 10 38 38 H 1.09003 * 109.47286 * 299.99724 * 13 12 10 39 39 H 1.08992 * 109.46727 * 59.99743 * 14 13 12 40 40 H 1.09003 * 109.46652 * 299.99936 * 14 13 12 41 41 H 1.08995 * 111.00228 * 272.10998 * 17 15 14 42 42 H 1.08992 * 111.00574 * 35.96762 * 17 15 14 43 43 H 1.09002 * 110.36649 * 81.83041 * 18 17 15 44 44 H 1.09000 * 110.36287 * 204.15199 * 18 17 15 45 45 H 0.96994 * 120.00230 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.88157 * 239.51653 * 28 19 18 47 47 H 1.08999 * 110.00803 * 118.43214 * 28 19 18 48 48 H 1.08995 * 109.50361 * 50.50790 * 29 8 7 49 49 H 1.08998 * 109.49520 * 170.61370 * 29 8 7 50 50 H 1.09004 * 109.73093 * 283.73348 * 30 5 4 51 51 H 1.08999 * 109.73482 * 44.36305 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6812 0.0005 5 6 3.5815 -0.6157 0.0015 6 7 2.3074 -1.0833 0.0005 7 6 1.9366 -2.4981 -0.0020 8 6 3.1553 -3.3257 -0.4271 9 1 3.3632 -3.1500 -1.4826 10 6 2.8690 -4.7891 -0.2088 11 8 1.7978 -5.1369 0.2411 12 7 3.8030 -5.7113 -0.5146 13 6 3.5245 -7.1339 -0.3029 14 6 4.7405 -7.9603 -0.7268 15 6 4.4493 -9.4460 -0.5063 16 1 3.5077 -9.7272 -0.9778 17 6 5.6143 -10.3191 -1.0431 18 6 5.4788 -11.5903 -0.1681 19 7 5.0803 -11.0927 1.1612 20 6 5.2825 -11.7419 2.3498 21 1 5.1023 -11.2285 3.2829 22 6 5.7192 -13.0594 2.3557 23 7 5.7586 -13.7446 1.2325 24 14 6.2508 -13.8602 3.9574 25 1 5.1022 -14.5912 4.5505 26 1 7.3591 -14.8121 3.6910 27 1 6.7138 -12.8139 4.9041 28 6 4.4288 -9.7848 0.9991 29 6 4.3715 -2.9139 0.4074 30 6 4.8050 -1.4972 0.0057 31 1 -0.3634 0.0000 1.0276 32 1 -0.3633 0.8901 -0.5138 33 1 -0.3634 -0.8899 -0.5139 34 1 1.1205 -2.6608 -0.7062 35 1 1.6220 -2.7976 0.9976 36 1 4.6595 -5.4332 -0.8748 37 1 2.6599 -7.4275 -0.8982 38 1 3.3159 -7.3103 0.7524 39 1 5.6047 -7.6666 -0.1312 40 1 4.9495 -7.7840 -1.7820 41 1 5.4724 -10.5541 -2.0980 42 1 6.5754 -9.8322 -0.8787 43 1 4.7105 -12.2492 -0.5726 44 1 6.4338 -12.1123 -0.1071 45 1 6.0634 -14.6654 1.2366 46 1 4.9769 -9.0259 1.5574 47 1 3.3993 -9.8344 1.3539 48 1 4.1090 -2.9291 1.4652 49 1 5.1902 -3.6100 0.2252 50 1 5.2490 -1.5152 -0.9897 51 1 5.5302 -1.1168 0.7250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267601474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:46 Heat of formation + Delta-G solvation = 49.186718 kcal Electronic energy + Delta-G solvation = -29952.601802 eV Core-core repulsion = 25888.180669 eV Total energy + Delta-G solvation = -4064.421133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.70508 -40.48262 -38.02631 -37.24153 -35.50879 -34.56951 -33.16240 -32.11755 -31.09542 -30.68732 -29.03541 -27.77012 -26.95294 -25.48003 -24.51789 -23.70387 -22.40803 -21.79549 -21.07367 -20.21210 -20.04251 -19.38868 -17.94868 -17.09329 -16.91714 -16.56316 -16.24802 -16.04572 -15.46825 -15.22617 -14.72859 -14.64554 -14.52888 -14.41225 -14.11843 -13.71159 -13.66735 -13.53139 -13.09047 -12.74835 -12.69812 -12.61857 -12.38632 -12.13592 -11.91292 -11.81022 -11.74122 -11.66604 -11.62293 -11.27147 -10.85450 -10.80953 -10.67927 -10.53016 -10.36424 -10.20676 -10.06043 -9.94440 -9.82425 -9.66631 -9.36879 -9.33915 -8.60233 -6.81525 -5.77000 -3.09273 1.41930 1.94243 2.14563 2.50319 2.76663 3.37391 3.43209 3.45126 3.53517 3.75450 3.90293 3.95209 4.06236 4.38890 4.46764 4.47825 4.54300 4.63415 4.74497 4.80694 4.94987 4.96929 5.00640 5.07646 5.13825 5.18077 5.26464 5.37153 5.42200 5.42455 5.50337 5.51831 5.57654 5.65908 5.77456 5.81219 5.90952 6.00614 6.10981 6.19180 6.30299 6.44920 6.52377 6.55700 6.69988 6.91303 7.07892 7.48129 7.56284 7.75867 7.77074 8.24696 8.38988 9.17780 9.79927 10.47650 11.36216 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.001655 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.516227 B =16911.582698 C =17071.536414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.180 3.820 3 N -0.300 5.300 4 N -0.290 5.290 5 C 0.171 3.829 6 N -0.470 5.470 7 C 0.123 3.877 8 C -0.123 4.123 9 H 0.112 0.888 10 C 0.522 3.478 11 O -0.535 6.535 12 N -0.722 5.722 13 C 0.116 3.884 14 C -0.116 4.116 15 C -0.097 4.097 16 H 0.073 0.927 17 C -0.140 4.140 18 C 0.172 3.828 19 N -0.604 5.604 20 C -0.229 4.229 21 H 0.075 0.925 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.140 3.860 29 C -0.119 4.119 30 C -0.031 4.031 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.025 0.975 44 H 0.067 0.933 45 H 0.253 0.747 46 H 0.021 0.979 47 H 0.019 0.981 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 23.925 -7.999 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 N -0.141 5.141 4 N -0.129 5.129 5 C -0.097 4.097 6 N -0.161 5.161 7 C 0.000 4.000 8 C -0.145 4.145 9 H 0.130 0.870 10 C 0.306 3.694 11 O -0.412 6.412 12 N -0.373 5.373 13 C -0.007 4.007 14 C -0.154 4.154 15 C -0.117 4.117 16 H 0.092 0.908 17 C -0.179 4.179 18 C 0.047 3.953 19 N -0.330 5.330 20 C -0.358 4.358 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.014 3.986 29 C -0.158 4.158 30 C -0.070 4.070 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.037 0.963 48 H 0.101 0.899 49 H 0.113 0.887 50 H 0.117 0.883 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.432 24.886 -7.590 26.578 hybrid contribution 0.184 -1.798 0.608 1.907 sum -5.248 23.088 -6.982 24.685 Atomic orbital electron populations 1.20241 0.83592 1.04618 1.04265 1.24700 0.97162 0.82669 1.04170 1.74500 0.96099 1.23649 1.19844 1.74053 1.12339 1.08019 1.18488 1.24712 0.87039 0.92629 1.05276 1.45993 1.07015 1.08438 1.54646 1.21758 0.97525 0.75302 1.05380 1.21634 0.96475 0.92972 1.03454 0.87011 1.19987 0.84407 0.86912 0.78046 1.90765 1.24163 1.81894 1.44332 1.46036 1.18161 1.07433 1.65627 1.21583 0.98787 0.77858 1.02431 1.21796 0.97014 0.95288 1.01352 1.22077 0.99430 0.92305 0.97843 0.90846 1.23036 0.96904 0.98958 0.98979 1.21393 1.00006 0.90722 0.83167 1.44493 1.67361 1.17745 1.03402 1.19020 1.38946 0.93751 0.84039 0.90709 1.24822 1.02380 0.96050 0.97218 1.69958 1.52373 1.09456 1.24789 0.86139 0.78096 0.79082 0.82652 1.21614 1.21602 1.20619 1.21352 0.95545 0.89313 0.92385 1.21772 0.96715 0.96563 1.00742 1.20232 0.91256 0.90824 1.04730 0.89415 0.88589 0.90291 0.87868 0.87777 0.76432 0.91224 0.90673 0.91077 0.91558 0.92318 0.92204 0.95662 0.91420 0.93727 0.96074 0.96276 0.89948 0.88729 0.88270 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.29 36.00 0.37 0.01 16 2 C 0.18 1.71 8.07 -155.45 -1.25 0.45 16 3 N -0.30 -3.84 12.23 32.70 0.40 -3.44 16 4 N -0.29 -3.69 12.21 32.76 0.40 -3.29 16 5 C 0.17 1.59 7.75 -155.30 -1.20 0.38 16 6 N -0.47 -3.93 3.11 -110.86 -0.35 -4.28 16 7 C 0.12 0.80 5.48 -4.00 -0.02 0.77 16 8 C -0.12 -0.66 2.54 -91.53 -0.23 -0.89 16 9 H 0.11 0.44 8.12 -51.93 -0.42 0.01 16 10 C 0.52 4.38 7.15 -10.99 -0.08 4.30 16 11 O -0.53 -6.69 15.83 5.56 0.09 -6.60 16 12 N -0.72 -5.37 5.38 -60.29 -0.32 -5.69 16 13 C 0.12 1.20 5.56 -4.04 -0.02 1.17 16 14 C -0.12 -1.24 4.74 -26.73 -0.13 -1.37 16 15 C -0.10 -1.48 2.92 -88.79 -0.26 -1.74 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.14 -2.39 6.53 -24.58 -0.16 -2.55 16 18 C 0.17 4.03 5.42 -2.53 -0.01 4.02 16 19 N -0.60 -15.16 3.39 -170.08 -0.58 -15.74 16 20 C -0.23 -6.36 10.24 -15.06 -0.15 -6.51 16 21 H 0.08 2.02 7.85 -52.48 -0.41 1.60 16 22 C -0.01 -0.23 5.40 -17.43 -0.09 -0.32 16 23 N -0.92 -26.78 10.68 55.49 0.59 -26.18 16 24 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.14 2.77 6.24 -3.07 -0.02 2.75 16 29 C -0.12 -0.52 5.23 -26.40 -0.14 -0.66 16 30 C -0.03 -0.16 6.33 -27.57 -0.17 -0.33 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.29 7.76 -51.93 -0.40 -0.11 16 34 H 0.10 0.57 7.85 -51.93 -0.41 0.17 16 35 H 0.10 0.74 7.79 -51.93 -0.40 0.34 16 36 H 0.40 1.81 7.80 -40.82 -0.32 1.49 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 39 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 43 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 44 H 0.07 1.77 6.94 -51.93 -0.36 1.41 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.02 0.41 7.70 -51.93 -0.40 0.01 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.45 8.12 -51.93 -0.42 0.02 16 49 H 0.09 0.24 7.32 -51.93 -0.38 -0.14 16 50 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 404.17 15.07 6.09 6.09 Total: -1.00 -36.46 404.17 -10.80 -47.26 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -8.52 Total: -4.48 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -3.58 Total: -0.52 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.15 Total: -58.62 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: 0.09 Total: -6.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.46 -10.80 -47.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267601474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.450 kcal (2) G-P(sol) polarization free energy of solvation -36.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds