Wall clock time and date at job start Wed Apr 1 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30837 * 126.46670 * 2 1 4 4 N 1.28905 * 109.73963 * 179.97438 * 3 2 1 5 5 C 1.29843 * 109.47974 * 359.97438 * 4 3 2 6 6 N 1.34694 * 126.46030 * 179.97438 * 2 1 3 7 7 C 1.46260 * 128.85191 * 0.15847 * 6 2 1 8 8 C 1.53324 * 108.72844 * 162.90704 * 7 6 2 9 9 H 1.09000 * 109.45347 * 290.28593 * 8 7 6 10 10 C 1.50700 * 109.44987 * 170.32865 * 8 7 6 11 11 O 1.21278 * 120.00418 * 0.02562 * 10 8 7 12 12 N 1.34772 * 119.99592 * 179.97438 * 10 8 7 13 13 C 1.46500 * 119.99800 * 180.02562 * 12 10 8 14 14 C 1.53009 * 109.47161 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46944 * 180.02562 * 14 13 12 16 16 H 1.08996 * 110.64314 * 51.85533 * 15 14 13 17 17 C 1.55161 * 110.71574 * 174.99852 * 15 14 13 18 18 C 1.54915 * 101.57651 * 154.04205 * 17 15 14 19 19 N 1.47423 * 104.83394 * 322.98859 * 18 17 15 20 20 C 1.36937 * 125.64616 * 204.08146 * 19 18 17 21 21 H 1.08006 * 119.99613 * 169.99493 * 20 19 18 22 22 C 1.38804 * 120.00391 * 350.00343 * 20 19 18 23 23 N 1.31624 * 120.00023 * 350.41582 * 22 20 19 24 24 Si 1.86796 * 120.00327 * 170.41940 * 22 20 19 25 25 H 1.48502 * 109.47437 * 94.13633 * 24 22 20 26 26 H 1.48507 * 109.47291 * 214.14010 * 24 22 20 27 27 H 1.48503 * 109.47103 * 334.13586 * 24 22 20 28 28 C 1.47021 * 108.70154 * 24.13080 * 19 18 17 29 29 C 1.53139 * 109.57525 * 50.29951 * 8 7 6 30 30 C 1.50796 * 128.52344 * 180.16167 * 5 4 3 31 31 H 1.08999 * 109.47716 * 269.99977 * 1 2 3 32 32 H 1.09005 * 109.47032 * 29.99725 * 1 2 3 33 33 H 1.09000 * 109.47615 * 149.99718 * 1 2 3 34 34 H 1.09006 * 109.59157 * 43.13532 * 7 6 2 35 35 H 1.08996 * 109.71713 * 282.75538 * 7 6 2 36 36 H 0.96994 * 120.00626 * 0.02562 * 12 10 8 37 37 H 1.09001 * 109.47595 * 60.00353 * 13 12 10 38 38 H 1.09003 * 109.47286 * 299.99724 * 13 12 10 39 39 H 1.08992 * 109.46727 * 59.99743 * 14 13 12 40 40 H 1.09003 * 109.46652 * 299.99936 * 14 13 12 41 41 H 1.08995 * 111.00228 * 272.10998 * 17 15 14 42 42 H 1.08992 * 111.00574 * 35.96762 * 17 15 14 43 43 H 1.09002 * 110.36649 * 81.83041 * 18 17 15 44 44 H 1.09000 * 110.36287 * 204.15199 * 18 17 15 45 45 H 0.96994 * 120.00230 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.88157 * 239.51653 * 28 19 18 47 47 H 1.08999 * 110.00803 * 118.43214 * 28 19 18 48 48 H 1.08995 * 109.50361 * 50.50790 * 29 8 7 49 49 H 1.08998 * 109.49520 * 170.61370 * 29 8 7 50 50 H 1.09004 * 109.73093 * 283.73348 * 30 5 4 51 51 H 1.08999 * 109.73482 * 44.36305 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6812 0.0005 5 6 3.5815 -0.6157 0.0015 6 7 2.3074 -1.0833 0.0005 7 6 1.9366 -2.4981 -0.0020 8 6 3.1553 -3.3257 -0.4271 9 1 3.3632 -3.1500 -1.4826 10 6 2.8690 -4.7891 -0.2088 11 8 1.7978 -5.1369 0.2411 12 7 3.8030 -5.7113 -0.5146 13 6 3.5245 -7.1339 -0.3029 14 6 4.7405 -7.9603 -0.7268 15 6 4.4493 -9.4460 -0.5063 16 1 3.5077 -9.7272 -0.9778 17 6 5.6143 -10.3191 -1.0431 18 6 5.4788 -11.5903 -0.1681 19 7 5.0803 -11.0927 1.1612 20 6 5.2825 -11.7419 2.3498 21 1 5.1023 -11.2285 3.2829 22 6 5.7192 -13.0594 2.3557 23 7 5.7586 -13.7446 1.2325 24 14 6.2508 -13.8602 3.9574 25 1 5.1022 -14.5912 4.5505 26 1 7.3591 -14.8121 3.6910 27 1 6.7138 -12.8139 4.9041 28 6 4.4288 -9.7848 0.9991 29 6 4.3715 -2.9139 0.4074 30 6 4.8050 -1.4972 0.0057 31 1 -0.3634 0.0000 1.0276 32 1 -0.3633 0.8901 -0.5138 33 1 -0.3634 -0.8899 -0.5139 34 1 1.1205 -2.6608 -0.7062 35 1 1.6220 -2.7976 0.9976 36 1 4.6595 -5.4332 -0.8748 37 1 2.6599 -7.4275 -0.8982 38 1 3.3159 -7.3103 0.7524 39 1 5.6047 -7.6666 -0.1312 40 1 4.9495 -7.7840 -1.7820 41 1 5.4724 -10.5541 -2.0980 42 1 6.5754 -9.8322 -0.8787 43 1 4.7105 -12.2492 -0.5726 44 1 6.4338 -12.1123 -0.1071 45 1 6.0634 -14.6654 1.2366 46 1 4.9769 -9.0259 1.5574 47 1 3.3993 -9.8344 1.3539 48 1 4.1090 -2.9291 1.4652 49 1 5.1902 -3.6100 0.2252 50 1 5.2490 -1.5152 -0.9897 51 1 5.5302 -1.1168 0.7250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267601474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:45 Heat of formation + Delta-G solvation = 25.545436 kcal Electronic energy + Delta-G solvation = -29953.626965 eV Core-core repulsion = 25888.180669 eV Total energy + Delta-G solvation = -4065.446296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.37911 -41.15387 -39.44275 -37.89559 -36.48540 -35.19733 -34.70979 -32.95627 -32.21282 -31.42540 -30.61001 -28.35429 -28.28797 -26.75898 -25.67458 -24.30151 -23.47928 -22.44330 -22.00750 -21.73229 -20.86531 -20.37917 -18.84514 -18.57054 -17.67852 -17.24086 -17.02396 -16.98318 -16.65993 -16.33236 -15.92202 -15.63616 -15.33791 -15.12660 -14.94449 -14.76286 -14.49467 -14.25598 -13.97799 -13.81901 -13.56198 -13.48311 -13.33198 -13.21782 -13.19817 -12.96192 -12.84487 -12.67210 -12.62326 -12.26599 -12.20900 -12.06999 -11.96729 -11.79952 -11.56471 -11.39712 -11.37869 -11.33059 -11.15877 -10.89997 -10.66272 -10.09493 -10.04026 -8.84035 -7.88723 -5.22625 0.78460 1.35134 1.44990 1.45901 1.51910 1.55763 1.76328 2.14232 2.49206 3.05693 3.25472 3.30037 3.39379 3.53489 3.57615 3.75672 3.77586 3.92287 3.97979 4.01139 4.11758 4.19634 4.23731 4.31822 4.35839 4.40202 4.55584 4.62197 4.65646 4.67122 4.73247 4.79091 4.83320 4.84234 4.92497 4.96068 5.00662 5.04797 5.07469 5.14364 5.21263 5.22392 5.29962 5.43762 5.45993 5.54477 5.65858 5.78231 5.87144 6.22255 6.51136 7.09535 7.19187 7.66528 7.78751 8.44610 9.23202 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.001655 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.516227 B =16911.582698 C =17071.536414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.348 5.348 4 N -0.338 5.338 5 C 0.173 3.827 6 N -0.469 5.469 7 C 0.122 3.878 8 C -0.111 4.111 9 H 0.137 0.863 10 C 0.525 3.475 11 O -0.580 6.580 12 N -0.708 5.708 13 C 0.123 3.877 14 C -0.100 4.100 15 C -0.084 4.084 16 H 0.076 0.924 17 C -0.122 4.122 18 C 0.172 3.828 19 N -0.628 5.628 20 C -0.244 4.244 21 H 0.076 0.924 22 C -0.066 4.066 23 N -0.948 5.948 24 Si 0.976 3.024 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.268 1.268 28 C 0.134 3.866 29 C -0.113 4.113 30 C -0.028 4.028 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.420 0.580 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.073 0.927 43 H -0.009 1.009 44 H 0.030 0.970 45 H 0.248 0.752 46 H 0.031 0.969 47 H 0.007 0.993 48 H 0.069 0.931 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 25.050 -9.051 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.188 5.188 4 N -0.176 5.176 5 C -0.095 4.095 6 N -0.160 5.160 7 C -0.001 4.001 8 C -0.133 4.133 9 H 0.155 0.845 10 C 0.311 3.689 11 O -0.460 6.460 12 N -0.360 5.360 13 C -0.001 4.001 14 C -0.138 4.138 15 C -0.103 4.103 16 H 0.094 0.906 17 C -0.160 4.160 18 C 0.047 3.953 19 N -0.354 5.354 20 C -0.374 4.374 21 H 0.094 0.906 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.804 3.196 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.193 1.193 28 C 0.009 3.991 29 C -0.151 4.151 30 C -0.067 4.067 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.258 0.742 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.009 0.991 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.025 0.975 48 H 0.088 0.912 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.615 26.062 -8.654 27.846 hybrid contribution -0.128 -2.163 0.966 2.373 sum -4.743 23.898 -7.688 25.549 Atomic orbital electron populations 1.20422 0.81097 1.05841 1.05255 1.25366 0.98578 0.82403 1.02627 1.74391 0.96758 1.25570 1.22058 1.73941 1.12770 1.10084 1.20804 1.25467 0.88527 0.92266 1.03280 1.46115 1.06696 1.08886 1.54304 1.21856 0.98582 0.74339 1.05282 1.21570 0.96271 0.90319 1.05095 0.84490 1.20404 0.83643 0.88002 0.76889 1.90759 1.26143 1.82723 1.46353 1.45818 1.18910 1.06101 1.65133 1.21303 0.98504 0.79497 1.00801 1.21634 0.97113 0.91430 1.03622 1.21999 0.98917 0.95416 0.94000 0.90587 1.22881 0.98328 0.95685 0.99132 1.21249 0.96829 0.93257 0.83982 1.44857 1.68043 1.19336 1.03204 1.19399 1.38335 0.94242 0.85384 0.90616 1.25657 1.03042 0.96785 1.00439 1.70163 1.53471 1.09347 1.26727 0.85111 0.77347 0.78081 0.79063 1.21524 1.21768 1.19316 1.21582 0.94314 0.87137 0.96100 1.21777 0.96990 0.96628 0.99748 1.20454 0.89662 0.90167 1.06387 0.88433 0.88062 0.88331 0.86841 0.88731 0.74210 0.91900 0.93157 0.90259 0.88216 0.89516 0.90845 0.99066 0.95124 0.94312 0.95099 0.97486 0.91199 0.85975 0.85869 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.29 71.24 0.73 0.09 16 2 C 0.18 3.30 8.07 138.14 1.11 4.42 16 3 N -0.35 -9.06 12.23 -50.46 -0.62 -9.68 16 4 N -0.34 -8.62 12.21 -50.28 -0.61 -9.24 16 5 C 0.17 3.00 7.75 138.13 1.07 4.07 16 6 N -0.47 -7.26 3.11 -504.64 -1.57 -8.83 16 7 C 0.12 1.34 5.48 86.53 0.47 1.81 16 8 C -0.11 -0.83 2.54 -11.38 -0.03 -0.86 16 9 H 0.14 0.43 8.12 -2.39 -0.02 0.41 16 10 C 0.52 7.32 7.15 87.66 0.63 7.95 16 11 O -0.58 -13.69 15.83 -3.02 -0.05 -13.74 16 12 N -0.71 -7.83 5.38 -463.05 -2.49 -10.32 16 13 C 0.12 2.17 5.56 86.38 0.48 2.65 16 14 C -0.10 -1.71 4.74 30.60 0.14 -1.56 16 15 C -0.08 -2.35 2.92 -9.61 -0.03 -2.38 16 16 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 17 C -0.12 -3.88 6.53 31.99 0.21 -3.67 16 18 C 0.17 8.21 5.42 86.86 0.47 8.68 16 19 N -0.63 -31.96 3.39 -692.00 -2.35 -34.31 16 20 C -0.24 -13.78 10.24 84.03 0.86 -12.92 16 21 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 22 C -0.07 -3.77 5.40 84.86 0.46 -3.31 16 23 N -0.95 -57.10 10.68 21.65 0.23 -56.86 16 24 Si 0.98 45.68 29.56 68.60 2.03 47.71 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 C 0.13 5.19 6.24 86.73 0.54 5.73 16 29 C -0.11 -0.59 5.23 30.81 0.16 -0.43 16 30 C -0.03 -0.20 6.33 30.05 0.19 -0.01 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 0.54 7.76 -2.39 -0.02 0.52 16 34 H 0.11 1.02 7.85 -2.38 -0.02 1.00 16 35 H 0.09 1.25 7.79 -2.39 -0.02 1.24 16 36 H 0.42 1.57 7.80 -92.71 -0.72 0.84 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.16 7.69 -2.39 -0.02 1.14 16 39 H 0.08 1.30 7.94 -2.39 -0.02 1.28 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.07 2.17 8.05 -2.39 -0.02 2.15 16 43 H -0.01 -0.46 8.07 -2.39 -0.02 -0.48 16 44 H 0.03 1.65 6.94 -2.39 -0.02 1.64 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.03 1.15 7.70 -2.39 -0.02 1.13 16 47 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 49 H 0.12 0.01 7.32 -2.39 -0.02 -0.01 16 50 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 51 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -85.14 404.17 2.25 -82.89 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 0.21 Total: 2.12 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 7.48 Total: 10.26 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -7.41 Total: -129.23 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.05 Total: -13.74 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -85.14 2.25 -82.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267601474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.436 kcal (2) G-P(sol) polarization free energy of solvation -85.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds