Wall clock time and date at job start Wed Apr 1 2020 05:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36593 * 126.57991 * 2 1 4 4 C 1.47514 * 125.77348 * 0.02562 * 3 2 1 5 5 O 1.21595 * 119.99964 * 6.44579 * 4 3 2 6 6 N 1.34777 * 120.00252 * 186.45381 * 4 3 2 7 7 C 1.46925 * 120.62956 * 6.24660 * 6 4 3 8 8 C 1.53622 * 108.54687 * 126.37110 * 7 6 4 9 9 C 1.53035 * 109.24410 * 54.85324 * 8 7 6 10 10 N 1.46496 * 109.45089 * 178.50234 * 9 8 7 11 11 C 1.36939 * 120.00256 * 60.05802 * 10 9 8 12 12 H 1.08000 * 119.99700 * 19.28410 * 11 10 9 13 13 C 1.38811 * 119.99961 * 199.28863 * 11 10 9 14 14 N 1.31615 * 120.00055 * 7.77394 * 13 11 10 15 15 Si 1.86798 * 119.99778 * 187.77826 * 13 11 10 16 16 H 1.48503 * 109.47263 * 90.00039 * 15 13 11 17 17 H 1.48501 * 109.47329 * 209.99840 * 15 13 11 18 18 H 1.48500 * 109.47345 * 329.99731 * 15 13 11 19 19 C 1.46503 * 120.00127 * 240.06466 * 10 9 8 20 20 C 1.52997 * 109.47372 * 83.20353 * 19 10 9 21 21 C 1.52993 * 117.50206 * 243.62318 * 20 19 10 22 22 C 1.52998 * 60.00357 * 252.51317 * 21 20 19 23 23 C 1.53049 * 109.53775 * 298.51508 * 9 8 7 24 24 C 1.46929 * 120.63405 * 186.52171 * 6 4 3 25 25 N 1.34406 * 108.45727 * 179.97438 * 3 2 1 26 26 N 1.28762 * 109.51962 * 0.02562 * 25 3 2 27 27 N 1.34811 * 126.57626 * 179.69620 * 2 1 3 28 28 C 1.46497 * 126.59939 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47301 * 89.99532 * 1 2 3 30 30 H 1.09001 * 109.46869 * 329.99670 * 1 2 3 31 31 H 1.09000 * 109.46906 * 209.99679 * 1 2 3 32 32 H 1.09003 * 109.58546 * 246.20331 * 7 6 4 33 33 H 1.09002 * 109.58880 * 6.62114 * 7 6 4 34 34 H 1.09005 * 109.62917 * 294.85927 * 8 7 6 35 35 H 1.08996 * 109.43392 * 174.72584 * 8 7 6 36 36 H 1.09000 * 109.46322 * 58.53133 * 9 8 7 37 37 H 0.97006 * 119.99912 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.47276 * 203.21330 * 19 10 9 39 39 H 1.09004 * 109.46655 * 323.20816 * 19 10 9 40 40 H 1.09003 * 115.54680 * 29.33993 * 20 19 10 41 41 H 1.09002 * 117.50242 * 0.02562 * 21 20 19 42 42 H 1.09004 * 117.49599 * 145.01971 * 21 20 19 43 43 H 1.09002 * 117.49776 * 252.51626 * 22 21 20 44 44 H 1.08992 * 117.49676 * 107.49024 * 22 21 20 45 45 H 1.09004 * 109.49112 * 301.41224 * 23 9 8 46 46 H 1.08995 * 109.49768 * 181.31766 * 23 9 8 47 47 H 1.08998 * 109.58373 * 353.37499 * 24 6 4 48 48 H 1.08998 * 109.58295 * 113.65472 * 24 6 4 49 49 H 1.09004 * 109.46922 * 90.00426 * 28 27 2 50 50 H 1.09004 * 109.47950 * 210.00561 * 28 27 2 51 51 H 1.09003 * 109.47291 * 330.01052 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5026 0.0005 5 8 0.6925 2.7647 0.1192 6 7 2.7748 3.4964 -0.1307 7 6 4.1853 3.1960 -0.4115 8 6 4.6151 3.9874 -1.6560 9 6 4.3213 5.4730 -1.4354 10 7 4.7623 6.2365 -2.6052 11 6 4.2253 5.9732 -3.8371 12 1 3.2846 5.4483 -3.9150 13 6 4.8899 6.3808 -4.9855 14 7 6.1040 6.8818 -4.9005 15 14 4.0611 6.2183 -6.6517 16 1 3.3017 7.4591 -6.9499 17 1 5.0923 6.0053 -7.6989 18 1 3.1305 5.0613 -6.6309 19 6 5.7782 7.2818 -2.4573 20 6 7.1701 6.6472 -2.4809 21 6 8.0225 6.7667 -1.2161 22 6 8.3761 7.5886 -2.4572 23 6 2.8174 5.6728 -1.2335 24 6 2.3662 4.9007 0.0102 25 7 3.5985 0.6788 0.0006 26 7 3.6299 -0.6084 0.0004 27 7 2.3104 -1.0826 0.0057 28 6 1.8864 -2.4849 0.0126 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5138 32 1 4.7980 3.4891 0.4410 33 1 4.3014 2.1282 -0.5975 34 1 4.0615 3.6321 -2.5252 35 1 5.6833 3.8487 -1.8229 36 1 4.8556 5.8216 -0.5516 37 1 6.5683 7.1670 -5.7030 38 1 5.6893 7.9935 -3.2780 39 1 5.6310 7.7998 -1.5096 40 1 7.2589 5.7302 -3.0634 41 1 7.5916 7.2970 -0.3669 42 1 8.6722 5.9279 -0.9660 43 1 9.2584 7.2905 -3.0237 44 1 8.1778 8.6598 -2.4247 45 1 2.2807 5.3017 -2.1067 46 1 2.6060 6.7336 -1.0998 47 1 1.2816 4.9582 0.1024 48 1 2.8316 5.3293 0.8978 49 1 1.7817 -2.8378 -1.0133 50 1 2.6328 -3.0878 0.5299 51 1 0.9290 -2.5725 0.5264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269616997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:04 Heat of formation + Delta-G solvation = 130.805308 kcal Electronic energy + Delta-G solvation = -31899.685255 eV Core-core repulsion = 27838.803370 eV Total energy + Delta-G solvation = -4060.881885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.42654 -39.59910 -37.56336 -36.33785 -35.21286 -34.36292 -32.54208 -32.01370 -30.61432 -29.71826 -28.20759 -27.71996 -26.07461 -24.98760 -23.31243 -22.73128 -21.82781 -21.40511 -21.16686 -20.07705 -19.27900 -18.96871 -17.50031 -16.64769 -16.30644 -15.97787 -15.80021 -15.20305 -14.85799 -14.44083 -14.30474 -14.03384 -13.69478 -13.67615 -13.54668 -13.42684 -13.33894 -13.29327 -13.00477 -12.82581 -12.71866 -12.18877 -11.97287 -11.74308 -11.54353 -11.07106 -11.05629 -10.82887 -10.68661 -10.58586 -10.55929 -10.51339 -10.35151 -10.14860 -9.89392 -9.84589 -9.67822 -9.47576 -9.24814 -9.10091 -8.69287 -8.28965 -8.20931 -6.68573 -5.61865 -3.08313 0.97773 1.66409 1.84098 3.18877 3.37958 3.42189 3.49490 3.49817 4.04800 4.10561 4.39450 4.53279 4.55523 4.60126 4.84912 5.01463 5.03589 5.21206 5.29886 5.31897 5.45201 5.46483 5.55062 5.67429 5.71781 5.76073 5.83529 5.91281 6.02508 6.08879 6.13658 6.19432 6.21307 6.36897 6.42055 6.46865 6.56933 6.62128 6.66208 6.75575 6.81790 6.93977 6.99111 7.15513 7.21053 7.42510 7.62342 7.68394 7.86799 7.88182 7.88929 8.32550 8.50900 9.34317 9.95953 10.42658 11.39123 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.003075 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.972921 B = 9104.100434 C = 9685.957459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.120 3.880 3 C -0.096 4.096 4 C 0.602 3.398 5 O -0.550 6.550 6 N -0.586 5.586 7 C 0.082 3.918 8 C -0.134 4.134 9 C 0.180 3.820 10 N -0.590 5.590 11 C -0.240 4.240 12 H 0.068 0.932 13 C -0.002 4.002 14 N -0.901 5.901 15 Si 0.900 3.100 16 H -0.290 1.290 17 H -0.293 1.293 18 H -0.283 1.283 19 C 0.203 3.797 20 C -0.075 4.075 21 C -0.226 4.226 22 C -0.183 4.183 23 C -0.140 4.140 24 C 0.114 3.886 25 N -0.196 5.196 26 N -0.073 5.073 27 N -0.366 5.366 28 C 0.088 3.912 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.250 0.750 38 H 0.096 0.904 39 H 0.002 0.998 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.100 0.900 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 -14.411 11.982 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.018 4.018 3 C -0.235 4.235 4 C 0.388 3.612 5 O -0.428 6.428 6 N -0.316 5.316 7 C -0.042 4.042 8 C -0.174 4.174 9 C 0.072 3.928 10 N -0.310 5.310 11 C -0.369 4.369 12 H 0.086 0.914 13 C -0.199 4.199 14 N -0.548 5.548 15 Si 0.731 3.269 16 H -0.218 1.218 17 H -0.220 1.220 18 H -0.209 1.209 19 C 0.078 3.922 20 C -0.095 4.095 21 C -0.263 4.263 22 C -0.220 4.220 23 C -0.180 4.180 24 C -0.008 4.008 25 N -0.069 5.069 26 N -0.051 5.051 27 N -0.152 5.152 28 C -0.054 4.054 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.114 0.886 39 H 0.020 0.980 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.082 0.918 49 H 0.107 0.893 50 H 0.119 0.881 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.001 -14.641 11.887 20.116 hybrid contribution -0.930 -0.117 -1.119 1.460 sum -7.931 -14.758 10.768 19.916 Atomic orbital electron populations 1.20735 0.84697 1.05373 1.04671 1.21889 0.96202 0.86283 0.97403 1.21250 0.88813 0.95569 1.17879 1.16742 0.85190 0.82464 0.76774 1.90708 1.16069 1.83311 1.52757 1.47936 1.09665 1.06024 1.68018 1.22775 0.79291 1.03848 0.98250 1.22413 1.01560 0.97142 0.96283 1.20248 0.91841 0.90264 0.90493 1.44108 1.45290 1.38125 1.03428 1.19150 1.01758 1.33208 0.82825 0.91372 1.24897 0.95714 1.01828 0.97463 1.70108 1.10854 1.47064 1.26733 0.86321 0.78280 0.77664 0.84644 1.21772 1.21954 1.20925 1.20432 0.84506 0.90357 0.96948 1.22951 0.92707 1.00277 0.93611 1.23110 1.07276 1.02922 0.93025 1.22580 1.01406 0.97214 1.00850 1.22381 0.99657 0.99398 0.96576 1.21730 1.01086 0.79379 0.98633 1.74433 1.18732 1.03435 1.10281 1.82030 0.95995 1.04010 1.23105 1.50250 1.06532 1.07678 1.50726 1.22149 1.02309 0.76195 1.04700 0.89060 0.86739 0.90829 0.92016 0.86138 0.91647 0.91149 0.92941 0.93959 0.88582 0.98033 0.87949 0.90625 0.90998 0.90852 0.90492 0.91416 0.91256 0.89585 0.91829 0.89278 0.88116 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.65 36.01 0.35 -0.43 16 2 C 0.12 1.37 7.02 -81.87 -0.57 0.79 16 3 C -0.10 -1.42 6.71 -83.55 -0.56 -1.98 16 4 C 0.60 9.84 7.68 -12.48 -0.10 9.74 16 5 O -0.55 -9.48 14.12 5.28 0.07 -9.40 16 6 N -0.59 -9.56 2.97 -173.74 -0.52 -10.07 16 7 C 0.08 1.33 6.14 -3.49 -0.02 1.31 16 8 C -0.13 -2.54 5.32 -26.39 -0.14 -2.69 16 9 C 0.18 3.53 2.59 -67.89 -0.18 3.35 16 10 N -0.59 -13.77 2.47 -165.62 -0.41 -14.18 16 11 C -0.24 -6.20 8.49 -15.06 -0.13 -6.33 16 12 H 0.07 1.79 6.82 -52.49 -0.36 1.43 16 13 C 0.00 -0.05 5.19 -17.43 -0.09 -0.14 16 14 N -0.90 -24.40 8.65 55.49 0.48 -23.92 16 15 Si 0.90 21.65 29.56 -169.99 -5.02 16.63 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 C 0.20 4.70 5.07 -4.04 -0.02 4.68 16 20 C -0.07 -1.65 4.44 -90.62 -0.40 -2.05 16 21 C -0.23 -4.24 10.18 -26.74 -0.27 -4.51 16 22 C -0.18 -3.61 10.25 -26.73 -0.27 -3.89 16 23 C -0.14 -2.52 5.31 -26.61 -0.14 -2.66 16 24 C 0.11 1.78 6.44 -3.71 -0.02 1.76 16 25 N -0.20 -3.00 8.76 32.84 0.29 -2.71 16 26 N -0.07 -1.00 13.78 60.35 0.83 -0.17 16 27 N -0.37 -3.74 4.03 -63.59 -0.26 -4.00 16 28 C 0.09 0.39 11.33 59.85 0.68 1.07 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 1.13 6.32 -51.93 -0.33 0.80 16 31 H 0.07 0.34 7.17 -51.93 -0.37 -0.03 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.12 2.00 4.04 -87.47 -0.35 1.64 16 34 H 0.06 1.39 7.71 -51.93 -0.40 0.99 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.05 1.00 7.88 -51.93 -0.41 0.59 16 37 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.10 2.52 6.04 -51.93 -0.31 2.20 16 39 H 0.00 0.03 7.80 -51.93 -0.40 -0.37 16 40 H 0.10 2.61 7.71 -51.93 -0.40 2.21 16 41 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.07 1.37 7.05 -51.93 -0.37 1.00 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 51 H 0.10 0.18 7.15 -51.93 -0.37 -0.19 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -30.65 397.91 -8.65 -39.31 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.22 Total: 4.47 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.90 Total: -1.96 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.42 Total: -55.05 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.65 -8.65 -39.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269616997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.111 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds