Wall clock time and date at job start Wed Apr 1 2020 05:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36593 * 126.57991 * 2 1 4 4 C 1.47514 * 125.77348 * 0.02562 * 3 2 1 5 5 O 1.21595 * 119.99964 * 6.44579 * 4 3 2 6 6 N 1.34777 * 120.00252 * 186.45381 * 4 3 2 7 7 C 1.46925 * 120.62956 * 6.24660 * 6 4 3 8 8 C 1.53622 * 108.54687 * 126.37110 * 7 6 4 9 9 C 1.53035 * 109.24410 * 54.85324 * 8 7 6 10 10 N 1.46496 * 109.45089 * 178.50234 * 9 8 7 11 11 C 1.36939 * 120.00256 * 60.05802 * 10 9 8 12 12 H 1.08000 * 119.99700 * 19.28410 * 11 10 9 13 13 C 1.38811 * 119.99961 * 199.28863 * 11 10 9 14 14 N 1.31615 * 120.00055 * 7.77394 * 13 11 10 15 15 Si 1.86798 * 119.99778 * 187.77826 * 13 11 10 16 16 H 1.48503 * 109.47263 * 90.00039 * 15 13 11 17 17 H 1.48501 * 109.47329 * 209.99840 * 15 13 11 18 18 H 1.48500 * 109.47345 * 329.99731 * 15 13 11 19 19 C 1.46503 * 120.00127 * 240.06466 * 10 9 8 20 20 C 1.52997 * 109.47372 * 83.20353 * 19 10 9 21 21 C 1.52993 * 117.50206 * 243.62318 * 20 19 10 22 22 C 1.52998 * 60.00357 * 252.51317 * 21 20 19 23 23 C 1.53049 * 109.53775 * 298.51508 * 9 8 7 24 24 C 1.46929 * 120.63405 * 186.52171 * 6 4 3 25 25 N 1.34406 * 108.45727 * 179.97438 * 3 2 1 26 26 N 1.28762 * 109.51962 * 0.02562 * 25 3 2 27 27 N 1.34811 * 126.57626 * 179.69620 * 2 1 3 28 28 C 1.46497 * 126.59939 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47301 * 89.99532 * 1 2 3 30 30 H 1.09001 * 109.46869 * 329.99670 * 1 2 3 31 31 H 1.09000 * 109.46906 * 209.99679 * 1 2 3 32 32 H 1.09003 * 109.58546 * 246.20331 * 7 6 4 33 33 H 1.09002 * 109.58880 * 6.62114 * 7 6 4 34 34 H 1.09005 * 109.62917 * 294.85927 * 8 7 6 35 35 H 1.08996 * 109.43392 * 174.72584 * 8 7 6 36 36 H 1.09000 * 109.46322 * 58.53133 * 9 8 7 37 37 H 0.97006 * 119.99912 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.47276 * 203.21330 * 19 10 9 39 39 H 1.09004 * 109.46655 * 323.20816 * 19 10 9 40 40 H 1.09003 * 115.54680 * 29.33993 * 20 19 10 41 41 H 1.09002 * 117.50242 * 0.02562 * 21 20 19 42 42 H 1.09004 * 117.49599 * 145.01971 * 21 20 19 43 43 H 1.09002 * 117.49776 * 252.51626 * 22 21 20 44 44 H 1.08992 * 117.49676 * 107.49024 * 22 21 20 45 45 H 1.09004 * 109.49112 * 301.41224 * 23 9 8 46 46 H 1.08995 * 109.49768 * 181.31766 * 23 9 8 47 47 H 1.08998 * 109.58373 * 353.37499 * 24 6 4 48 48 H 1.08998 * 109.58295 * 113.65472 * 24 6 4 49 49 H 1.09004 * 109.46922 * 90.00426 * 28 27 2 50 50 H 1.09004 * 109.47950 * 210.00561 * 28 27 2 51 51 H 1.09003 * 109.47291 * 330.01052 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5026 0.0005 5 8 0.6925 2.7647 0.1192 6 7 2.7748 3.4964 -0.1307 7 6 4.1853 3.1960 -0.4115 8 6 4.6151 3.9874 -1.6560 9 6 4.3213 5.4730 -1.4354 10 7 4.7623 6.2365 -2.6052 11 6 4.2253 5.9732 -3.8371 12 1 3.2846 5.4483 -3.9150 13 6 4.8899 6.3808 -4.9855 14 7 6.1040 6.8818 -4.9005 15 14 4.0611 6.2183 -6.6517 16 1 3.3017 7.4591 -6.9499 17 1 5.0923 6.0053 -7.6989 18 1 3.1305 5.0613 -6.6309 19 6 5.7782 7.2818 -2.4573 20 6 7.1701 6.6472 -2.4809 21 6 8.0225 6.7667 -1.2161 22 6 8.3761 7.5886 -2.4572 23 6 2.8174 5.6728 -1.2335 24 6 2.3662 4.9007 0.0102 25 7 3.5985 0.6788 0.0006 26 7 3.6299 -0.6084 0.0004 27 7 2.3104 -1.0826 0.0057 28 6 1.8864 -2.4849 0.0126 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5138 32 1 4.7980 3.4891 0.4410 33 1 4.3014 2.1282 -0.5975 34 1 4.0615 3.6321 -2.5252 35 1 5.6833 3.8487 -1.8229 36 1 4.8556 5.8216 -0.5516 37 1 6.5683 7.1670 -5.7030 38 1 5.6893 7.9935 -3.2780 39 1 5.6310 7.7998 -1.5096 40 1 7.2589 5.7302 -3.0634 41 1 7.5916 7.2970 -0.3669 42 1 8.6722 5.9279 -0.9660 43 1 9.2584 7.2905 -3.0237 44 1 8.1778 8.6598 -2.4247 45 1 2.2807 5.3017 -2.1067 46 1 2.6060 6.7336 -1.0998 47 1 1.2816 4.9582 0.1024 48 1 2.8316 5.3293 0.8978 49 1 1.7817 -2.8378 -1.0133 50 1 2.6328 -3.0878 0.5299 51 1 0.9290 -2.5725 0.5264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269616997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:03 Heat of formation + Delta-G solvation = 113.462533 kcal Electronic energy + Delta-G solvation = -31900.437294 eV Core-core repulsion = 27838.803370 eV Total energy + Delta-G solvation = -4061.633924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.36820 -40.89592 -39.13364 -37.86990 -36.26959 -35.78603 -33.80681 -33.35218 -31.96383 -31.42142 -29.10365 -28.36218 -27.92462 -26.48907 -24.64429 -24.11607 -23.23007 -22.96105 -22.15665 -21.43733 -21.02014 -20.33185 -18.70023 -18.05374 -17.49246 -17.30763 -16.96836 -16.70976 -16.11284 -16.02667 -15.48345 -15.43666 -15.19572 -15.01958 -14.91365 -14.51079 -14.39296 -14.31087 -14.06818 -13.96835 -13.60548 -13.38042 -13.22161 -13.18858 -12.97304 -12.76202 -12.67026 -12.51810 -12.33601 -12.20760 -12.17227 -12.04861 -11.82998 -11.71823 -11.37925 -11.24544 -11.19319 -10.99451 -10.70078 -10.48326 -10.24274 -10.04762 -9.57098 -8.58875 -7.65262 -5.10821 0.10734 0.56260 1.13918 1.46065 1.48564 1.54286 1.98277 2.20597 2.56390 3.11584 3.36283 3.37946 3.44459 3.62465 3.63973 3.70435 3.98948 4.21979 4.23658 4.31396 4.32019 4.35145 4.44359 4.47600 4.50575 4.53581 4.62369 4.65686 4.66892 4.72306 4.82949 4.85798 4.89437 4.91970 4.96557 5.04878 5.11662 5.15625 5.18134 5.30774 5.45433 5.46637 5.51708 5.58601 5.61910 5.69677 5.76683 5.92590 6.00793 6.36429 6.50923 6.83224 7.11387 7.32840 8.05080 8.45192 9.32516 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.003075 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.972921 B = 9104.100434 C = 9685.957459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.132 3.868 3 C -0.131 4.131 4 C 0.600 3.400 5 O -0.564 6.564 6 N -0.593 5.593 7 C 0.095 3.905 8 C -0.121 4.121 9 C 0.178 3.822 10 N -0.601 5.601 11 C -0.238 4.238 12 H 0.058 0.942 13 C -0.047 4.047 14 N -0.913 5.913 15 Si 0.949 3.051 16 H -0.290 1.290 17 H -0.299 1.299 18 H -0.284 1.284 19 C 0.210 3.790 20 C -0.095 4.095 21 C -0.194 4.194 22 C -0.179 4.179 23 C -0.128 4.128 24 C 0.121 3.879 25 N -0.220 5.220 26 N -0.096 5.096 27 N -0.351 5.351 28 C 0.072 3.928 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.033 0.967 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.241 0.759 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.112 0.888 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 -16.045 13.985 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 C -0.271 4.271 4 C 0.387 3.613 5 O -0.443 6.443 6 N -0.323 5.323 7 C -0.028 4.028 8 C -0.161 4.161 9 C 0.071 3.929 10 N -0.321 5.321 11 C -0.368 4.368 12 H 0.076 0.924 13 C -0.242 4.242 14 N -0.560 5.560 15 Si 0.780 3.220 16 H -0.218 1.218 17 H -0.226 1.226 18 H -0.210 1.210 19 C 0.084 3.916 20 C -0.116 4.116 21 C -0.231 4.231 22 C -0.217 4.217 23 C -0.168 4.168 24 C -0.001 4.001 25 N -0.093 5.093 26 N -0.075 5.075 27 N -0.137 5.137 28 C -0.067 4.067 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.124 0.876 50 H 0.130 0.870 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.987 -16.314 13.911 22.880 hybrid contribution -0.700 0.262 -1.718 1.874 sum -8.688 -16.052 12.193 21.950 Atomic orbital electron populations 1.20852 0.82146 1.06574 1.05544 1.22333 0.97486 0.85651 0.95303 1.21269 0.89601 0.95612 1.20582 1.16994 0.84956 0.83185 0.76166 1.90689 1.16449 1.83778 1.53427 1.47992 1.09622 1.06382 1.68352 1.22625 0.79640 1.03445 0.97138 1.22216 1.00084 0.97197 0.96585 1.20412 0.92898 0.90058 0.89526 1.44252 1.45414 1.38798 1.03648 1.19205 1.01292 1.32198 0.84121 0.92393 1.25418 0.96433 1.02694 0.99688 1.70281 1.11433 1.47917 1.26391 0.85537 0.77231 0.77317 0.81865 1.21777 1.22563 1.20952 1.20245 0.85222 0.89880 0.96221 1.22509 0.93103 0.99539 0.96451 1.23128 1.05128 1.02652 0.92240 1.22620 1.00141 0.97334 1.01598 1.22211 0.97930 0.99919 0.96767 1.21685 1.01378 0.78988 0.98038 1.74321 1.19403 1.04310 1.11216 1.81910 0.98102 1.03495 1.23988 1.50596 1.05169 1.09375 1.48592 1.22731 1.04269 0.73118 1.06537 0.88118 0.88531 0.86589 0.90389 0.86030 0.94819 0.92613 0.91517 0.94891 0.92020 0.96342 0.91926 0.88781 0.89627 0.90622 0.89859 0.94283 0.90898 0.89393 0.89354 0.87593 0.86976 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 9.65 71.24 0.69 -0.55 16 2 C 0.13 2.76 7.02 41.72 0.29 3.06 16 3 C -0.13 -3.79 6.71 40.81 0.27 -3.52 16 4 C 0.60 19.41 7.68 86.69 0.67 20.08 16 5 O -0.56 -19.18 14.12 -4.01 -0.06 -19.24 16 6 N -0.59 -19.12 2.97 -821.85 -2.44 -21.56 16 7 C 0.10 3.09 6.14 86.51 0.53 3.62 16 8 C -0.12 -4.71 5.32 30.82 0.16 -4.54 16 9 C 0.18 7.02 2.59 45.02 0.12 7.14 16 10 N -0.60 -28.69 2.47 -677.89 -1.68 -30.37 16 11 C -0.24 -12.72 8.49 84.03 0.71 -12.00 16 12 H 0.06 3.17 6.82 -2.91 -0.02 3.15 16 13 C -0.05 -2.59 5.19 84.86 0.44 -2.15 16 14 N -0.91 -51.11 8.65 21.65 0.19 -50.92 16 15 Si 0.95 45.87 29.56 68.60 2.03 47.90 16 16 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 17 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 19 C 0.21 9.83 5.07 86.38 0.44 10.26 16 20 C -0.10 -4.23 4.44 -10.80 -0.05 -4.27 16 21 C -0.19 -6.89 10.18 30.59 0.31 -6.57 16 22 C -0.18 -6.93 10.25 30.59 0.31 -6.62 16 23 C -0.13 -4.62 5.31 30.67 0.16 -4.46 16 24 C 0.12 3.67 6.44 86.36 0.56 4.23 16 25 N -0.22 -6.70 8.76 -50.00 -0.44 -7.13 16 26 N -0.10 -2.56 13.78 37.02 0.51 -2.05 16 27 N -0.35 -6.40 4.03 -355.09 -1.43 -7.83 16 28 C 0.07 0.39 11.33 127.77 1.45 1.83 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.74 6.32 -2.39 -0.02 1.72 16 31 H 0.12 0.53 7.17 -2.39 -0.02 0.51 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.12 4.08 4.04 -48.37 -0.20 3.88 16 34 H 0.03 1.50 7.71 -2.38 -0.02 1.48 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.45 7.88 -2.39 -0.02 2.43 16 37 H 0.24 13.50 8.31 -92.70 -0.77 12.73 16 38 H 0.06 3.32 6.04 -2.39 -0.01 3.30 16 39 H 0.02 0.79 7.80 -2.39 -0.02 0.77 16 40 H 0.06 3.30 7.71 -2.39 -0.02 3.28 16 41 H 0.09 3.02 8.03 -2.39 -0.02 3.00 16 42 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 44 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.04 1.62 7.05 -2.39 -0.02 1.60 16 46 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.09 2.66 7.00 -2.39 -0.02 2.65 16 48 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 50 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.13 -0.16 7.15 -2.39 -0.02 -0.18 16 Total: -1.00 -69.90 397.91 4.50 -65.40 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.75 Total: 20.27 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 7.07 Total: 5.53 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -5.29 Total: -119.87 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.06 Total: -19.24 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -69.90 4.50 -65.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269616997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.860 kcal (2) G-P(sol) polarization free energy of solvation -69.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds